Wall clock time and date at job start Sun Mar 7 2021 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84906 * 316.19718 * 4 3 2 6 6 C 1.53780 * 113.61616 * 87.50209 * 4 3 2 7 7 C 1.53778 * 87.07918 * 139.98126 * 6 4 3 8 8 H 1.09006 * 113.69210 * 220.00744 * 7 6 4 9 9 N 1.46499 * 113.61455 * 89.12209 * 7 6 4 10 10 C 1.34777 * 120.00430 * 107.49922 * 9 7 6 11 11 O 1.21286 * 119.99590 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00329 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.47049 * 179.97438 * 12 10 9 14 14 C 1.35903 * 116.99710 * 180.02562 * 13 12 10 15 15 C 1.38712 * 120.05475 * 179.72875 * 14 13 12 16 16 C 1.38167 * 119.94371 * 179.71743 * 15 14 13 17 17 C 1.50697 * 119.97249 * 180.27259 * 16 15 14 18 18 O 1.42900 * 109.47324 * 300.30387 * 17 16 15 19 19 Si 1.86295 * 109.47069 * 180.30292 * 17 16 15 20 20 C 1.38246 * 120.05204 * 0.57724 * 16 15 14 21 21 C 1.38286 * 120.11610 * 359.67478 * 20 16 15 22 22 C 1.38124 * 120.05150 * 0.04930 * 21 20 16 23 23 C 1.53773 * 87.08484 * 334.56871 * 7 6 4 24 24 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 28 28 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 29 29 H 1.09000 * 113.61765 * 254.53212 * 6 4 3 30 30 H 1.09002 * 113.61239 * 25.43466 * 6 4 3 31 31 H 0.97004 * 119.99686 * 287.50336 * 9 7 6 32 32 H 1.08997 * 109.46855 * 300.00148 * 12 10 9 33 33 H 1.08997 * 109.46847 * 60.00059 * 12 10 9 34 34 H 1.08000 * 120.02670 * 359.97438 * 15 14 13 35 35 H 1.09004 * 109.46852 * 60.29996 * 17 16 15 36 36 H 0.96701 * 114.00214 * 180.02562 * 18 17 16 37 37 H 1.48495 * 110.00350 * 59.99920 * 19 17 16 38 38 H 1.48502 * 110.00108 * 181.32066 * 19 17 16 39 39 H 1.07998 * 119.93886 * 179.69602 * 20 16 15 40 40 H 1.08000 * 119.97297 * 180.02562 * 21 20 16 41 41 H 1.08005 * 120.02903 * 179.97438 * 22 21 20 42 42 H 1.08999 * 113.61917 * 270.88547 * 23 7 6 43 43 H 1.09001 * 113.61605 * 139.97961 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8999 0.4286 0.6962 6 6 4.1453 1.0745 -1.4068 7 6 5.2679 1.9990 -0.9071 8 1 5.5811 2.7431 -1.6395 9 7 6.3956 1.2817 -0.3072 10 6 7.5684 1.1978 -0.9661 11 8 7.6899 1.7159 -2.0559 12 6 8.7282 0.4594 -0.3492 13 8 9.8496 0.5098 -1.2335 14 6 10.9861 -0.1133 -0.8249 15 6 12.1111 -0.1086 -1.6362 16 6 13.2672 -0.7379 -1.2159 17 6 14.4917 -0.7279 -2.0942 18 8 14.1871 -1.3514 -3.3434 19 14 15.8668 -1.6617 -1.2530 20 6 13.2994 -1.3820 0.0069 21 6 12.1776 -1.3926 0.8153 22 6 11.0212 -0.7601 0.4022 23 6 4.2605 2.5352 0.1235 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 4.4862 0.0700 -1.6576 30 1 3.5274 1.5199 -2.1864 31 1 6.2982 0.8670 0.5643 32 1 8.9922 0.9256 0.6000 33 1 8.4475 -0.5798 -0.1779 34 1 12.0847 0.3900 -2.5939 35 1 14.8052 0.3014 -2.2688 36 1 14.9313 -1.3809 -3.9601 37 1 15.4519 -3.0665 -1.0094 38 1 17.0899 -1.6321 -2.0947 39 1 14.2025 -1.8774 0.3314 40 1 12.2055 -1.8961 1.7703 41 1 10.1451 -0.7690 1.0337 42 1 3.6740 3.3800 -0.2377 43 1 4.6942 2.7100 1.1082 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:24 Heat of formation + Delta-G solvation = -89.540548 kcal Electronic energy + Delta-G solvation = -24340.547159 eV Core-core repulsion = 20547.107575 eV Total energy + Delta-G solvation = -3793.439584 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69969 -41.06760 -39.83036 -38.87597 -38.18723 -37.41308 -34.62526 -32.60080 -31.72687 -30.13245 -28.86003 -26.98968 -26.78985 -26.56409 -23.74128 -23.64633 -22.68225 -21.61788 -20.33192 -19.21465 -18.59665 -18.32639 -17.53101 -17.44069 -17.37793 -17.11665 -16.86251 -16.59412 -16.31342 -15.82203 -15.72813 -15.60204 -15.17660 -14.73101 -14.54258 -14.28639 -14.12732 -13.80651 -13.77897 -13.57934 -13.46536 -13.28060 -12.84968 -12.51743 -12.39589 -12.16042 -12.02825 -11.83320 -11.72103 -11.60025 -11.31093 -11.07575 -10.60055 -10.58789 -10.19198 -9.89558 -9.29142 -4.92128 0.19990 0.38707 1.26243 1.36977 1.45019 1.62074 1.95206 2.54771 2.63266 2.78906 3.35656 3.44551 3.48768 3.59135 3.78087 3.79172 3.83496 3.95390 3.99479 4.06856 4.13210 4.26343 4.26974 4.34429 4.38845 4.46908 4.48422 4.59378 4.61737 4.63964 4.69229 4.74464 4.81520 4.84522 4.97465 4.99677 5.07786 5.14512 5.23121 5.36168 5.45915 5.52168 5.68204 6.22745 6.25273 6.42790 6.55168 7.07310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.103 4.103 5 H 0.103 0.897 6 C -0.147 4.147 7 C 0.112 3.888 8 H 0.084 0.916 9 N -0.692 5.692 10 C 0.515 3.485 11 O -0.573 6.573 12 C 0.038 3.962 13 O -0.323 6.323 14 C 0.113 3.887 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.099 4.099 18 O -0.561 6.561 19 Si 0.783 3.217 20 C -0.159 4.159 21 C -0.070 4.070 22 C -0.203 4.203 23 C -0.119 4.119 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.421 0.579 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.395 0.605 37 H -0.294 1.294 38 H -0.287 1.287 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.108 0.892 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 0.836 9.203 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.121 4.121 5 H 0.121 0.879 6 C -0.186 4.186 7 C 0.007 3.993 8 H 0.102 0.898 9 N -0.345 5.345 10 C 0.301 3.699 11 O -0.451 6.451 12 C -0.039 4.039 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.170 4.170 16 C -0.048 4.048 17 C -0.206 4.206 18 O -0.371 6.371 19 Si 0.687 3.313 20 C -0.177 4.177 21 C -0.087 4.087 22 C -0.221 4.221 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.245 0.755 37 H -0.222 1.222 38 H -0.214 1.214 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.126 0.874 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.335 0.442 8.477 8.593 hybrid contribution -0.505 -0.071 -1.447 1.534 sum -1.840 0.371 7.030 7.276 Atomic orbital electron populations 1.22881 0.79912 1.03534 1.00743 1.87849 1.21033 1.29245 1.95590 1.22689 0.93214 0.84284 1.01011 1.22583 0.92956 0.99016 0.97591 0.87867 1.23504 0.97317 1.00121 0.97649 1.21864 0.85296 0.94890 0.97263 0.89770 1.45341 1.10152 1.56060 1.22994 1.20583 0.84362 0.79870 0.85072 1.90763 1.83664 1.48024 1.22680 1.22724 0.83805 1.03382 0.94019 1.86118 1.19622 1.71956 1.45976 1.19179 0.85806 0.93941 0.94283 1.20290 0.91839 1.04603 1.00233 1.19290 0.93757 0.96821 0.94964 1.25271 1.03095 1.03813 0.88421 1.86557 1.41927 1.81892 1.26732 0.93972 0.72670 0.78365 0.86265 1.21180 1.00340 1.01618 0.94522 1.21329 0.90981 0.96163 1.00249 1.21643 1.01847 1.02713 0.95894 1.23271 0.95565 0.96827 1.00034 0.93056 0.93532 0.89138 0.92716 0.91925 0.92236 0.89021 0.74055 0.85180 0.85913 0.87010 0.89142 0.75482 1.22176 1.21412 0.83483 0.81672 0.81936 0.87362 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.25 10.70 -148.98 -1.59 -2.85 16 3 C 0.06 -0.14 5.78 71.98 0.42 0.28 16 4 C -0.10 0.41 3.89 -10.27 -0.04 0.37 16 5 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 6 C -0.15 0.04 7.43 31.12 0.23 0.27 16 7 C 0.11 -0.10 4.32 45.51 0.20 0.10 16 8 H 0.08 0.36 7.46 -2.38 -0.02 0.34 16 9 N -0.69 1.89 5.26 -440.05 -2.32 -0.43 16 10 C 0.51 2.37 7.91 87.66 0.69 3.06 16 11 O -0.57 -9.57 16.10 15.99 0.26 -9.31 16 12 C 0.04 -0.05 5.22 71.24 0.37 0.32 16 13 O -0.32 -2.89 9.67 -73.42 -0.71 -3.60 16 14 C 0.11 0.74 6.69 22.51 0.15 0.89 16 15 C -0.15 -1.40 9.55 22.37 0.21 -1.19 16 16 C -0.05 -0.26 5.42 -19.88 -0.11 -0.37 16 17 C -0.10 -0.24 2.81 71.24 0.20 -0.04 16 18 O -0.56 -3.38 12.74 -148.98 -1.90 -5.27 16 19 Si 0.78 -1.05 29.79 68.60 2.04 1.00 16 20 C -0.16 -0.13 8.67 22.28 0.19 0.07 16 21 C -0.07 0.15 10.04 22.25 0.22 0.37 16 22 C -0.20 0.15 9.04 22.37 0.20 0.35 16 23 C -0.12 0.78 7.39 31.12 0.23 1.01 16 24 H 0.05 -0.20 8.14 -2.39 -0.02 -0.21 16 25 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 26 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.05 -0.16 7.84 -2.39 -0.02 -0.18 16 28 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 -0.02 7.90 -2.39 -0.02 -0.04 16 31 H 0.42 -4.34 8.70 -92.71 -0.81 -5.15 16 32 H 0.13 -1.12 7.66 -2.39 -0.02 -1.14 16 33 H 0.12 -0.89 7.66 -2.39 -0.02 -0.91 16 34 H 0.11 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.09 -0.06 7.96 -2.38 -0.02 -0.08 16 36 H 0.39 -1.01 8.74 -74.06 -0.65 -1.65 16 37 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 38 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 39 H 0.15 -0.55 4.87 -2.91 -0.01 -0.57 16 40 H 0.17 -1.49 8.06 -2.91 -0.02 -1.51 16 41 H 0.16 -1.34 6.30 -2.91 -0.02 -1.36 16 42 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 43 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: 0.00 -28.46 359.95 -0.18 -28.64 By element: Atomic # 1 Polarization: -14.50 SS G_CDS: -0.39 Total: -14.88 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.42 Total: 6.70 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -2.32 Total: -0.43 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -3.94 Total: -21.03 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.04 Total: 1.00 kcal Total: -28.46 -0.18 -28.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.899 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds