Wall clock time and date at job start Sun Mar 7 2021 04:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 C 1.52997 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85118 * 43.80275 * 4 3 2 6 6 C 1.53774 * 113.61607 * 175.00539 * 4 3 2 7 7 C 1.53777 * 87.08414 * 140.06412 * 6 4 3 8 8 H 1.09008 * 113.61609 * 219.93363 * 7 6 4 9 9 N 1.46497 * 113.61556 * 89.11803 * 7 6 4 10 10 C 1.34775 * 120.00350 * 155.00180 * 9 7 6 11 11 O 1.21282 * 120.00144 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99953 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.46663 * 180.02562 * 12 10 9 14 14 C 1.35995 * 116.99488 * 179.97438 * 13 12 10 15 15 C 1.39155 * 120.07324 * 180.02562 * 14 13 12 16 16 O 1.35997 * 120.07035 * 359.97438 * 15 14 13 17 17 C 1.42900 * 117.00002 * 179.97438 * 16 15 14 18 18 C 1.38562 * 119.85546 * 179.70187 * 15 14 13 19 19 C 1.38240 * 119.99781 * 0.53093 * 18 15 14 20 20 C 1.50705 * 119.92432 * 179.76388 * 19 18 15 21 21 O 1.42894 * 109.47171 * 299.72668 * 20 19 18 22 22 Si 1.86298 * 109.46780 * 179.72109 * 20 19 18 23 23 C 1.38246 * 120.14724 * 359.49353 * 19 18 15 24 24 C 1.38241 * 120.14673 * 0.22727 * 23 19 18 25 25 C 1.53773 * 87.08034 * 334.56723 * 7 6 4 26 26 H 1.09002 * 109.46845 * 299.99592 * 1 2 3 27 27 H 1.09004 * 109.47229 * 59.99482 * 1 2 3 28 28 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46687 * 60.00570 * 3 2 1 30 30 H 1.08999 * 109.47324 * 300.00518 * 3 2 1 31 31 H 1.09002 * 113.61920 * 25.51347 * 6 4 3 32 32 H 1.09001 * 113.61680 * 254.61170 * 6 4 3 33 33 H 0.97000 * 119.99716 * 334.99665 * 9 7 6 34 34 H 1.09001 * 109.47063 * 59.99887 * 12 10 9 35 35 H 1.09002 * 109.47068 * 299.99493 * 12 10 9 36 36 H 1.08995 * 109.47068 * 60.00458 * 17 16 15 37 37 H 1.09006 * 109.46875 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47067 * 299.99987 * 17 16 15 39 39 H 1.07999 * 120.00074 * 180.27389 * 18 15 14 40 40 H 1.09004 * 109.46779 * 59.72992 * 20 19 18 41 41 H 0.96709 * 113.99337 * 180.02562 * 21 20 19 42 42 H 1.48506 * 109.99834 * 60.00830 * 22 20 19 43 43 H 1.48502 * 110.00011 * 181.32094 * 22 20 19 44 44 H 1.08003 * 119.92885 * 180.25568 * 23 19 18 45 45 H 1.08003 * 119.99935 * 180.02562 * 24 23 19 46 46 H 1.09005 * 113.61723 * 139.98263 * 25 7 6 47 47 H 1.09002 * 113.61468 * 270.88140 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8999 0.4286 -0.6962 6 6 4.2604 2.5352 -0.1234 7 6 5.2692 1.9982 0.9056 8 1 5.5834 2.7417 1.6382 9 7 6.3960 1.2812 0.3036 10 6 7.5695 1.1967 0.9610 11 8 7.6929 1.7146 2.0507 12 6 8.7285 0.4586 0.3420 13 8 9.8510 0.5082 1.2249 14 6 10.9877 -0.1152 0.8140 15 6 12.1192 -0.1071 1.6240 16 8 12.0909 0.5246 2.8280 17 6 13.2889 0.4916 3.6063 18 6 13.2730 -0.7489 1.2036 19 6 13.3017 -1.3860 -0.0230 20 6 14.5592 -2.0790 -0.4809 21 8 15.6232 -1.1289 -0.5648 22 14 14.2732 -2.8409 -2.1567 23 6 12.1778 -1.3936 -0.8279 24 6 11.0216 -0.7601 -0.4119 25 6 4.1471 1.0734 1.4059 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.6745 3.3798 0.2393 32 1 4.6929 2.7107 -1.1084 33 1 6.2975 0.8672 -0.5680 34 1 8.9914 0.9255 -0.6072 35 1 8.4475 -0.5805 0.1702 36 1 14.0981 0.9620 3.0478 37 1 13.1303 1.0307 4.5403 38 1 13.5518 -0.5434 3.8247 39 1 14.1511 -0.7479 1.8322 40 1 14.8243 -2.8594 0.2325 41 1 16.4652 -1.5060 -0.8546 42 1 13.9110 -1.7872 -3.1385 43 1 15.4957 -3.5545 -2.6056 44 1 12.2029 -1.8959 -1.7837 45 1 10.1448 -0.7678 -1.0425 46 1 4.4881 0.0686 1.6556 47 1 3.5302 1.5182 2.1867 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:35 Heat of formation + Delta-G solvation = -122.271288 kcal Electronic energy + Delta-G solvation = -28713.710869 eV Core-core repulsion = 24444.632162 eV Total energy + Delta-G solvation = -4269.078707 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.84769 -41.30251 -40.02424 -39.17186 -38.79675 -38.16228 -37.12653 -34.58391 -32.16010 -31.47658 -30.26262 -29.02211 -28.43358 -26.93250 -26.59173 -26.13446 -23.94278 -23.31188 -22.50029 -21.83183 -20.32525 -19.72112 -18.66788 -18.36835 -18.21227 -17.60559 -17.51605 -17.32806 -16.98900 -16.74670 -16.63331 -16.30938 -16.06745 -15.90138 -15.73067 -15.50838 -15.45923 -14.83646 -14.46354 -14.23993 -14.05132 -14.00473 -13.77707 -13.52359 -13.49506 -13.42595 -12.83719 -12.79084 -12.56020 -12.37207 -12.24632 -12.17525 -11.94813 -11.80729 -11.70932 -11.57360 -11.28720 -11.03015 -10.57982 -10.50545 -10.15367 -9.77415 -8.91247 -4.89358 0.16706 0.27256 1.32234 1.42194 1.46038 1.64279 1.98225 2.30539 2.52274 2.56096 2.80846 3.36423 3.47215 3.51792 3.61452 3.69909 3.82184 3.89222 3.89925 3.98167 4.04973 4.12038 4.17216 4.27167 4.30308 4.34631 4.36643 4.40830 4.47883 4.48762 4.61249 4.62979 4.64018 4.65288 4.71836 4.76578 4.83818 4.86410 4.99329 5.02498 5.10148 5.10808 5.17617 5.38664 5.54443 5.58994 5.96268 6.24643 6.39874 6.53188 6.59256 7.12496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.102 4.102 5 H 0.104 0.896 6 C -0.120 4.120 7 C 0.112 3.888 8 H 0.082 0.918 9 N -0.692 5.692 10 C 0.515 3.485 11 O -0.572 6.572 12 C 0.035 3.965 13 O -0.313 6.313 14 C 0.084 3.916 15 C 0.077 3.923 16 O -0.334 6.334 17 C 0.020 3.980 18 C -0.152 4.152 19 C -0.082 4.082 20 C -0.088 4.088 21 O -0.560 6.560 22 Si 0.773 3.227 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.146 4.146 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.421 0.579 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.395 0.605 42 H -0.293 1.293 43 H -0.289 1.289 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.061 0.939 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -4.020 -6.183 7.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.012 4.012 4 C -0.121 4.121 5 H 0.122 0.878 6 C -0.158 4.158 7 C 0.007 3.993 8 H 0.101 0.899 9 N -0.346 5.346 10 C 0.301 3.699 11 O -0.450 6.450 12 C -0.043 4.043 13 O -0.227 6.227 14 C 0.038 3.962 15 C 0.031 3.969 16 O -0.248 6.248 17 C -0.074 4.074 18 C -0.171 4.171 19 C -0.082 4.082 20 C -0.196 4.196 21 O -0.370 6.370 22 Si 0.678 3.322 23 C -0.130 4.130 24 C -0.177 4.177 25 C -0.185 4.185 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.112 0.888 41 H 0.245 0.755 42 H -0.220 1.220 43 H -0.216 1.216 44 H 0.175 0.825 45 H 0.195 0.805 46 H 0.079 0.921 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.028 -3.231 -5.744 7.252 hybrid contribution 1.213 0.520 0.223 1.339 sum -1.814 -2.711 -5.521 6.413 Atomic orbital electron populations 1.22881 0.79936 1.03546 1.00707 1.87848 1.21003 1.29195 1.95583 1.22684 0.93243 0.84297 1.00960 1.22574 0.92894 0.98933 0.97663 0.87769 1.23274 0.95622 0.96885 1.00033 1.21851 0.85353 0.94918 0.97193 0.89931 1.45330 1.10113 1.56156 1.22984 1.20584 0.84336 0.79886 0.85086 1.90769 1.83602 1.47915 1.22743 1.22777 0.83868 1.03710 0.93954 1.86219 1.19147 1.71966 1.45379 1.18567 0.85236 0.98089 0.94265 1.18647 0.93334 0.97883 0.87008 1.86188 1.38938 1.71592 1.28113 1.23286 0.85465 1.03140 0.95513 1.21008 0.96497 1.00902 0.98714 1.19275 0.94915 0.99953 0.94060 1.25091 0.86895 0.94662 1.12964 1.86548 1.22219 1.37998 1.90246 0.94087 0.84850 0.80967 0.72315 1.20960 0.92013 0.99997 0.99986 1.21362 1.01407 1.00417 0.94510 1.23494 0.97219 1.00178 0.97592 0.93548 0.93119 0.89090 0.92757 0.91995 0.87473 0.88647 0.74036 0.85493 0.85248 0.92143 0.86992 0.91438 0.84008 0.88836 0.75479 1.22025 1.21618 0.82549 0.80495 0.92052 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.18 10.70 -148.98 -1.59 -2.77 16 3 C 0.06 -0.14 5.78 71.98 0.42 0.28 16 4 C -0.10 0.40 3.88 -10.27 -0.04 0.36 16 5 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 6 C -0.12 0.74 7.39 31.12 0.23 0.97 16 7 C 0.11 -0.06 4.32 45.51 0.20 0.14 16 8 H 0.08 0.40 7.46 -2.38 -0.02 0.39 16 9 N -0.69 1.71 5.26 -440.05 -2.32 -0.61 16 10 C 0.51 2.63 7.91 87.66 0.69 3.33 16 11 O -0.57 -10.06 16.10 16.00 0.26 -9.80 16 12 C 0.03 -0.03 5.22 71.24 0.37 0.34 16 13 O -0.31 -3.19 9.45 -67.08 -0.63 -3.83 16 14 C 0.08 0.63 6.70 22.57 0.15 0.78 16 15 C 0.08 0.78 6.70 22.57 0.15 0.93 16 16 O -0.33 -4.24 10.28 -79.65 -0.82 -5.06 16 17 C 0.02 0.07 9.81 113.37 1.11 1.19 16 18 C -0.15 -0.94 8.60 22.35 0.19 -0.75 16 19 C -0.08 -0.24 5.42 -19.86 -0.11 -0.35 16 20 C -0.09 0.07 2.81 71.24 0.20 0.27 16 21 O -0.56 -1.23 12.75 -148.98 -1.90 -3.13 16 22 Si 0.77 -2.73 29.78 68.60 2.04 -0.69 16 23 C -0.11 0.04 8.66 22.27 0.19 0.23 16 24 C -0.16 0.05 9.04 22.35 0.20 0.25 16 25 C -0.15 0.05 7.43 31.12 0.23 0.28 16 26 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 28 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.05 -0.15 7.85 -2.38 -0.02 -0.17 16 30 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.11 -0.79 8.10 -2.39 -0.02 -0.81 16 32 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.42 -4.31 8.70 -92.71 -0.81 -5.12 16 34 H 0.13 -1.01 7.66 -2.39 -0.02 -1.03 16 35 H 0.13 -1.06 7.66 -2.39 -0.02 -1.08 16 36 H 0.06 0.13 7.67 -2.39 -0.02 0.11 16 37 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.07 0.04 7.65 -2.39 -0.02 0.02 16 39 H 0.14 0.57 6.30 -2.91 -0.02 0.56 16 40 H 0.09 -0.42 7.96 -2.38 -0.02 -0.44 16 41 H 0.39 -2.36 8.74 -74.05 -0.65 -3.00 16 42 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 43 H -0.29 -0.27 7.11 99.48 0.71 0.43 16 44 H 0.16 -0.94 4.87 -2.91 -0.01 -0.95 16 45 H 0.18 -1.60 6.30 -2.91 -0.02 -1.61 16 46 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 47 H 0.09 -0.01 7.90 -2.39 -0.02 -0.03 16 Total: 0.00 -31.56 389.20 0.07 -31.50 By element: Atomic # 1 Polarization: -14.65 SS G_CDS: -0.41 Total: -15.06 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 5.44 Total: 9.45 kcal Atomic # 7 Polarization: 1.71 SS G_CDS: -2.32 Total: -0.61 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -4.69 Total: -24.59 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.04 Total: -0.69 kcal Total: -31.56 0.07 -31.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.774 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds