Wall clock time and date at job start Sun Mar 7 2021 04:33:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42893 * 113.99991 * 2 1
4 4 C 1.53000 * 109.47310 * 179.97438 * 3 2 1
5 5 H 1.09008 * 112.84760 * 43.79973 * 4 3 2
6 6 C 1.53781 * 113.61653 * 174.99752 * 4 3 2
7 7 C 1.53781 * 87.07867 * 139.98158 * 6 4 3
8 8 H 1.08998 * 113.61755 * 219.93524 * 7 6 4
9 9 N 1.46499 * 113.61598 * 89.11692 * 7 6 4
10 10 C 1.34777 * 120.00195 * 154.99527 * 9 7 6
11 11 O 1.21653 * 119.99992 * 0.02562 * 10 9 7
12 12 C 1.46999 * 120.00036 * 180.27703 * 10 9 7
13 13 C 1.35801 * 125.14053 * 179.72648 * 12 10 9
14 14 C 1.46260 * 106.09130 * 179.97438 * 13 12 10
15 15 C 1.39777 * 134.15370 * 180.02562 * 14 13 12
16 16 C 1.50697 * 120.09384 * 359.97438 * 15 14 13
17 17 O 1.42902 * 109.47050 * 284.99978 * 16 15 14
18 18 Si 1.86294 * 109.47048 * 165.00205 * 16 15 14
19 19 C 1.36632 * 119.80732 * 180.02562 * 15 14 13
20 20 C 1.38761 * 120.49645 * 359.96509 * 19 15 14
21 21 C 1.38255 * 120.68142 * 0.02562 * 20 19 15
22 22 O 1.35965 * 120.12394 * 180.02562 * 21 20 19
23 23 C 1.42905 * 116.99581 * 359.97438 * 22 21 20
24 24 C 1.39443 * 119.75960 * 0.02562 * 21 20 19
25 25 O 1.34779 * 133.24808 * 180.31088 * 24 21 20
26 26 C 1.53779 * 113.61355 * 272.49927 * 4 3 2
27 27 H 1.08997 * 109.47284 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47340 * 300.00418 * 1 2 3
29 29 H 1.09002 * 109.46693 * 60.00661 * 1 2 3
30 30 H 1.09005 * 109.47616 * 59.99904 * 3 2 1
31 31 H 1.09001 * 109.47269 * 299.99947 * 3 2 1
32 32 H 1.08999 * 113.61487 * 25.43863 * 6 4 3
33 33 H 1.08996 * 113.61202 * 254.52836 * 6 4 3
34 34 H 0.97000 * 120.00069 * 335.00255 * 9 7 6
35 35 H 1.08002 * 126.95779 * 359.97438 * 13 12 10
36 36 H 1.08992 * 109.47200 * 44.99524 * 16 15 14
37 37 H 0.96703 * 113.99627 * 300.00140 * 17 16 15
38 38 H 1.48503 * 110.00302 * 179.97438 * 18 16 15
39 39 H 1.48502 * 109.99866 * 301.31646 * 18 16 15
40 40 H 1.08003 * 119.74536 * 179.97438 * 19 15 14
41 41 H 1.08001 * 119.65789 * 179.97438 * 20 19 15
42 42 H 1.09000 * 109.47354 * 60.00501 * 23 22 21
43 43 H 1.09000 * 109.46843 * 180.02562 * 23 22 21
44 44 H 1.08999 * 109.47340 * 300.00262 * 23 22 21
45 45 H 1.09000 * 113.61513 * 105.46757 * 26 4 3
46 46 H 1.08999 * 113.61644 * 334.56156 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 1 3.9005 0.4283 -0.6944
6 6 4.2604 2.5353 -0.1222
7 6 5.2671 1.9995 0.9095
8 1 5.5797 2.7437 1.6419
9 7 6.3953 1.2819 0.3108
10 6 7.5675 1.1983 0.9707
11 8 7.6886 1.7184 2.0637
12 6 8.7014 0.4835 0.3672
13 6 9.9266 0.3401 0.9351
14 6 10.7253 -0.4345 -0.0143
15 6 12.0406 -0.9075 -0.0218
16 6 12.9506 -0.6286 1.1465
17 8 13.3741 0.7356 1.1054
18 14 14.4397 -1.7441 1.0539
19 6 12.4991 -1.6225 -1.0921
20 6 11.6684 -1.8838 -2.1724
21 6 10.3639 -1.4259 -2.1862
22 8 9.5597 -1.6889 -3.2505
23 6 10.1281 -2.4444 -4.3220
24 6 9.8760 -0.6933 -1.1047
25 8 8.6807 -0.1330 -0.8328
26 6 4.1441 1.0750 1.4086
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 1.6886 1.8464 0.8900
31 1 1.6886 1.8463 -0.8900
32 1 3.6737 3.3801 0.2384
33 1 4.6950 2.7096 -1.1065
34 1 6.2987 0.8669 -0.5607
35 1 10.2466 0.7210 1.8937
36 1 12.4145 -0.8146 2.0771
37 1 13.8590 0.9729 0.3030
38 1 15.3455 -1.4786 2.2003
39 1 14.0107 -3.1658 1.0637
40 1 13.5157 -1.9871 -1.0970
41 1 12.0450 -2.4500 -3.0114
42 1 10.4494 -3.4174 -3.9503
43 1 9.3822 -2.5824 -5.1048
44 1 10.9863 -1.9094 -4.7286
45 1 4.4847 0.0706 1.6601
46 1 3.5256 1.5207 2.1876
There are 64 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 64
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16535612_6672420.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:33:48
Heat of formation + Delta-G solvation = -82.633885 kcal
Electronic energy + Delta-G solvation = -30296.209795 eV
Core-core repulsion = 25927.935233 eV
Total energy + Delta-G solvation = -4368.274562 eV
No. of doubly occupied orbitals = 64
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 348.150 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-43.80602 -41.49174 -40.64799 -39.76072 -39.08413 -38.27614 -37.01250 -34.73500
-33.69903 -31.94830 -31.11106 -29.74233 -28.52295 -27.06728 -26.71177 -26.31070
-25.33118 -24.02260 -23.42919 -22.18567 -21.82023 -20.39260 -19.91222 -19.06826
-18.56025 -17.86581 -17.74616 -17.48523 -17.25568 -16.95855 -16.84627 -16.62047
-16.39675 -16.19824 -15.91236 -15.84800 -15.74402 -15.02431 -14.72364 -14.57534
-14.52494 -14.31177 -14.17553 -13.81022 -13.58377 -13.49630 -13.41160 -13.28868
-12.90212 -12.43707 -12.41530 -12.30033 -12.09886 -11.94105 -11.91922 -11.68779
-11.62790 -11.35255 -11.05944 -10.62134 -10.45255 -10.35984 -9.86357 -9.02946
-5.00540 -0.72403 0.07837 0.56042 1.12098 1.29772 1.68096 1.80068
1.81237 2.00147 2.12266 2.37835 2.76787 3.12042 3.38277 3.39892
3.55111 3.61337 3.67084 3.73939 3.78191 3.84831 3.91080 3.94802
4.14914 4.30406 4.32513 4.36395 4.39538 4.42905 4.43578 4.45044
4.56549 4.58583 4.61306 4.71466 4.75709 4.77015 4.79377 4.82830
4.84541 4.94913 5.00974 5.02473 5.04748 5.19503 5.30498 5.43506
5.55704 6.12894 6.21860 6.26020 6.73536 6.78504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.419 6.419
3 C 0.067 3.933
4 C -0.108 4.108
5 H 0.092 0.908
6 C -0.119 4.119
7 C 0.109 3.891
8 H 0.100 0.900
9 N -0.687 5.687
10 C 0.605 3.395
11 O -0.544 6.544
12 C -0.034 4.034
13 C -0.114 4.114
14 C -0.099 4.099
15 C -0.108 4.108
16 C -0.081 4.081
17 O -0.555 6.555
18 Si 0.798 3.202
19 C -0.078 4.078
20 C -0.164 4.164
21 C 0.136 3.864
22 O -0.335 6.335
23 C 0.013 3.987
24 C 0.019 3.981
25 O -0.182 6.182
26 C -0.143 4.143
27 H 0.089 0.911
28 H 0.049 0.951
29 H 0.050 0.950
30 H 0.061 0.939
31 H 0.062 0.938
32 H 0.119 0.881
33 H 0.088 0.912
34 H 0.416 0.584
35 H 0.170 0.830
36 H 0.096 0.904
37 H 0.396 0.604
38 H -0.301 1.301
39 H -0.280 1.280
40 H 0.177 0.823
41 H 0.185 0.815
42 H 0.075 0.925
43 H 0.114 0.886
44 H 0.078 0.922
45 H 0.057 0.943
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.557 -1.585 -8.232 8.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.339 6.339
3 C -0.010 4.010
4 C -0.127 4.127
5 H 0.110 0.890
6 C -0.157 4.157
7 C 0.004 3.996
8 H 0.118 0.882
9 N -0.337 5.337
10 C 0.391 3.609
11 O -0.423 6.423
12 C -0.084 4.084
13 C -0.134 4.134
14 C -0.100 4.100
15 C -0.109 4.109
16 C -0.190 4.190
17 O -0.363 6.363
18 Si 0.702 3.298
19 C -0.095 4.095
20 C -0.182 4.182
21 C 0.090 3.910
22 O -0.249 6.249
23 C -0.080 4.080
24 C -0.029 4.029
25 O -0.084 6.084
26 C -0.181 4.181
27 H 0.108 0.892
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.137 0.863
33 H 0.107 0.893
34 H 0.253 0.747
35 H 0.187 0.813
36 H 0.114 0.886
37 H 0.246 0.754
38 H -0.229 1.229
39 H -0.207 1.207
40 H 0.194 0.806
41 H 0.202 0.798
42 H 0.093 0.907
43 H 0.132 0.868
44 H 0.097 0.903
45 H 0.076 0.924
46 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 1.416 -1.931 -6.739 7.152
hybrid contribution -0.998 0.050 0.190 1.017
sum 0.419 -1.881 -6.550 6.827
Atomic orbital electron populations
1.22883 0.79815 1.03527 1.00829 1.87855 1.21141 1.29292 1.95607
1.22668 0.92748 0.84299 1.01245 1.22584 0.93432 0.98868 0.97768
0.88977 1.23296 0.95573 0.97067 0.99791 1.22050 0.84897 0.95112
0.97535 0.88167 1.45540 1.10576 1.54961 1.22611 1.16662 0.81318
0.78867 0.84077 1.90887 1.82916 1.47890 1.20617 1.21889 0.97172
1.02866 0.86515 1.22852 0.91087 0.98849 1.00643 1.19597 0.95308
1.01602 0.93488 1.19694 0.92277 1.00452 0.98443 1.25375 1.04738
0.91619 0.97223 1.86506 1.77282 1.25679 1.46815 0.93836 0.75580
0.74551 0.85846 1.20803 1.00945 0.96461 0.91323 1.21440 0.90345
1.04094 1.02346 1.18007 0.90813 0.96267 0.85929 1.86150 1.40100
1.71070 1.27539 1.23499 1.01744 0.95466 0.87315 1.19260 0.84455
1.02297 0.96859 1.84010 1.32706 1.58410 1.33248 1.23506 0.97009
1.00020 0.97604 0.89204 0.93254 0.93122 0.92066 0.91999 0.86322
0.89311 0.74669 0.81268 0.88592 0.75413 1.22901 1.20669 0.80630
0.79810 0.90679 0.86764 0.90303 0.92409 0.87845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.01 11.01 113.37 1.25 1.24 16
2 O -0.42 -2.04 10.70 -148.98 -1.59 -3.64 16
3 C 0.07 -0.03 5.78 71.98 0.42 0.39 16
4 C -0.11 0.08 3.89 -10.27 -0.04 0.04 16
5 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16
6 C -0.12 0.45 7.39 31.12 0.23 0.68 16
7 C 0.11 0.18 4.32 45.52 0.20 0.38 16
8 H 0.10 0.41 7.46 -2.39 -0.02 0.39 16
9 N -0.69 -2.82 5.26 -443.70 -2.33 -5.15 16
10 C 0.60 6.16 7.80 86.54 0.67 6.84 16
11 O -0.54 -8.77 16.43 -4.20 -0.07 -8.84 16
12 C -0.03 -0.34 7.07 24.00 0.17 -0.18 16
13 C -0.11 -1.12 10.68 23.79 0.25 -0.87 16
14 C -0.10 -0.74 6.16 -20.24 -0.12 -0.86 16
15 C -0.11 -0.18 5.26 -19.87 -0.10 -0.29 16
16 C -0.08 -0.07 2.70 71.23 0.19 0.13 16
17 O -0.55 -0.99 12.88 -148.98 -1.92 -2.91 16
18 Si 0.80 -2.87 29.93 68.60 2.05 -0.82 16
19 C -0.08 0.32 8.62 22.02 0.19 0.51 16
20 C -0.16 0.61 9.03 22.40 0.20 0.81 16
21 C 0.14 0.45 6.70 22.56 0.15 0.60 16
22 O -0.33 -0.94 10.50 -93.16 -0.98 -1.92 16
23 C 0.01 -0.09 9.81 113.37 1.11 1.02 16
24 C 0.02 0.16 7.35 23.14 0.17 0.33 16
25 O -0.18 -1.77 10.28 -13.41 -0.14 -1.91 16
26 C -0.14 -0.21 7.43 31.12 0.23 0.02 16
27 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16
28 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16
29 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16
30 H 0.06 -0.14 7.84 -2.38 -0.02 -0.16 16
31 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16
32 H 0.12 -0.81 8.10 -2.39 -0.02 -0.83 16
33 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16
34 H 0.42 0.43 8.42 -92.71 -0.78 -0.35 16
35 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16
36 H 0.10 0.36 7.96 -2.39 -0.02 0.34 16
37 H 0.40 -2.89 8.70 -74.06 -0.64 -3.53 16
38 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16
39 H -0.28 -0.20 7.11 99.48 0.71 0.51 16
40 H 0.18 -2.08 5.08 -2.91 -0.01 -2.10 16
41 H 0.18 -2.09 6.26 -2.91 -0.02 -2.11 16
42 H 0.07 -0.75 7.66 -2.39 -0.02 -0.77 16
43 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16
44 H 0.08 -0.84 7.66 -2.39 -0.02 -0.85 16
45 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16
46 H 0.10 -0.04 7.89 -2.39 -0.02 -0.05 16
Total: 0.00 -24.62 387.41 -0.16 -24.79
By element:
Atomic # 1 Polarization: -10.05 SS G_CDS: -0.35 Total: -10.40 kcal
Atomic # 6 Polarization: 5.62 SS G_CDS: 5.17 Total: 10.79 kcal
Atomic # 7 Polarization: -2.82 SS G_CDS: -2.33 Total: -5.15 kcal
Atomic # 8 Polarization: -14.51 SS G_CDS: -4.70 Total: -19.21 kcal
Atomic # 14 Polarization: -2.87 SS G_CDS: 2.05 Total: -0.82 kcal
Total: -24.62 -0.16 -24.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16535612_6672420.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.848 kcal
(2) G-P(sol) polarization free energy of solvation -24.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds