Wall clock time and date at job start Sun Mar 7 2021 04:33:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42900 * 114.00038 * 2 1
4 4 C 1.52996 * 109.47509 * 180.02562 * 3 2 1
5 5 H 1.09001 * 112.85070 * 316.19818 * 4 3 2
6 6 C 1.53785 * 113.61684 * 87.50228 * 4 3 2
7 7 C 1.53775 * 87.08307 * 139.98123 * 6 4 3
8 8 H 1.08998 * 113.69133 * 220.00808 * 7 6 4
9 9 N 1.46506 * 113.61552 * 89.11660 * 7 6 4
10 10 C 1.34771 * 119.99869 * 107.49788 * 9 7 6
11 11 O 1.21706 * 120.00256 * 0.02562 * 10 9 7
12 12 C 1.46582 * 119.99811 * 180.02562 * 10 9 7
13 13 C 1.36651 * 125.45604 * 180.02562 * 12 10 9
14 14 C 1.37471 * 113.29660 * 180.02562 * 13 12 10
15 15 C 1.50702 * 122.45292 * 180.02562 * 14 13 12
16 16 C 1.33826 * 115.09991 * 0.02562 * 14 13 12
17 17 C 1.50694 * 124.52270 * 179.97438 * 16 14 13
18 18 O 1.42900 * 109.47161 * 45.09019 * 17 16 14
19 19 Si 1.86297 * 109.47469 * 165.08787 * 17 16 14
20 20 S 1.70610 * 110.95268 * 0.26034 * 16 14 13
21 21 C 1.53780 * 113.61524 * 184.99869 * 4 3 2
22 22 H 1.08995 * 109.47679 * 60.00210 * 1 2 3
23 23 H 1.09010 * 109.46775 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47139 * 299.99340 * 1 2 3
25 25 H 1.09003 * 109.47297 * 59.99928 * 3 2 1
26 26 H 1.09006 * 109.47228 * 300.00554 * 3 2 1
27 27 H 1.09000 * 113.60925 * 25.43288 * 6 4 3
28 28 H 1.08998 * 113.61329 * 254.53553 * 6 4 3
29 29 H 0.96995 * 119.99872 * 287.50613 * 9 7 6
30 30 H 1.07996 * 123.35597 * 359.97438 * 13 12 10
31 31 H 1.09002 * 109.46771 * 264.22610 * 15 14 13
32 32 H 1.08996 * 109.46755 * 24.22740 * 15 14 13
33 33 H 1.08995 * 109.46936 * 144.22450 * 15 14 13
34 34 H 1.09003 * 109.47384 * 285.09232 * 17 16 14
35 35 H 0.96708 * 114.00537 * 180.02562 * 18 17 16
36 36 H 1.48492 * 110.00389 * 178.67762 * 19 17 16
37 37 H 1.48500 * 109.99870 * 300.00536 * 19 17 16
38 38 H 1.08998 * 113.61477 * 105.47088 * 21 4 3
39 39 H 1.08996 * 113.61560 * 334.56717 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 1 3.9004 0.4285 0.6943
6 6 4.1441 1.0752 -1.4086
7 6 5.2671 1.9997 -0.9096
8 1 5.5795 2.7439 -1.6420
9 7 6.3953 1.2822 -0.3107
10 6 7.5674 1.1986 -0.9707
11 8 7.6888 1.7195 -2.0639
12 6 8.6961 0.4802 -0.3718
13 6 9.9296 0.3274 -0.9396
14 6 10.8021 -0.3930 -0.1588
15 6 12.2178 -0.6842 -0.5856
16 6 10.3024 -0.8168 1.0081
17 6 11.0706 -1.6219 2.0241
18 8 12.3704 -1.0541 2.1978
19 14 10.1613 -1.6004 3.6500
20 16 8.6770 -0.3305 1.1883
21 6 4.2603 2.5354 0.1221
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3633 -1.0278 0.0005
24 1 -0.3633 0.5137 0.8900
25 1 1.6886 1.8464 0.8900
26 1 1.6885 1.8464 -0.8900
27 1 3.5255 1.5208 -2.1876
28 1 4.4847 0.0708 -1.6601
29 1 6.2987 0.8672 0.5606
30 1 10.1926 0.7314 -1.9060
31 1 12.2622 -1.6702 -1.0481
32 1 12.5430 0.0689 -1.3033
33 1 12.8719 -0.6619 0.2860
34 1 11.1671 -2.6502 1.6754
35 1 12.9220 -1.5228 2.8392
36 1 10.8923 -2.4172 4.6517
37 1 10.0233 -0.2040 4.1362
38 1 4.6948 2.7099 1.1063
39 1 3.6735 3.3802 -0.2384
There are 52 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 52
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16535612_6739946.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:33:52
Heat of formation + Delta-G solvation = -53.172836 kcal
Electronic energy + Delta-G solvation = -21553.430080 eV
Core-core repulsion = 18169.401956 eV
Total energy + Delta-G solvation = -3384.028124 eV
No. of doubly occupied orbitals = 52
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 298.107 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.34582 -40.09444 -39.32945 -38.19116 -37.52130 -34.44932 -32.23578 -30.18133
-29.76077 -27.19942 -26.75880 -26.27521 -24.45814 -23.36632 -21.90654 -20.40242
-19.87640 -19.19438 -18.66212 -17.45429 -17.32455 -17.08301 -16.81970 -16.38613
-16.04584 -15.92986 -15.87742 -15.06828 -14.78629 -14.65350 -14.47231 -14.28768
-14.17719 -13.78977 -13.51557 -13.21191 -13.04000 -12.98958 -12.84928 -12.53233
-12.40319 -12.21194 -11.89469 -11.87490 -11.60228 -11.32038 -11.06187 -10.72512
-10.60102 -10.11760 -9.66707 -9.34565 -5.23655 -0.56188 0.30509 0.70257
1.04509 1.37082 1.46212 1.79200 2.02363 2.22812 2.73833 3.08426
3.40578 3.54750 3.60776 3.73177 3.83468 3.91227 4.15876 4.27310
4.27916 4.33009 4.39370 4.44285 4.52129 4.54654 4.62153 4.64609
4.68649 4.75404 4.77662 4.85490 4.92815 5.03136 5.05109 5.10682
5.12879 5.44553 5.52345 5.54722 6.19550 6.25723 6.40367 7.15194
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.390 6.390
3 C 0.069 3.931
4 C -0.111 4.111
5 H 0.099 0.901
6 C -0.143 4.143
7 C 0.120 3.880
8 H 0.109 0.891
9 N -0.710 5.710
10 C 0.597 3.403
11 O -0.523 6.523
12 C -0.262 4.262
13 C -0.047 4.047
14 C -0.087 4.087
15 C -0.104 4.104
16 C -0.194 4.194
17 C -0.032 4.032
18 O -0.525 6.525
19 Si 0.650 3.350
20 S 0.201 5.799
21 C -0.138 4.138
22 H 0.041 0.959
23 H 0.087 0.913
24 H 0.041 0.959
25 H 0.051 0.949
26 H 0.052 0.948
27 H 0.093 0.907
28 H 0.075 0.925
29 H 0.399 0.601
30 H 0.155 0.845
31 H 0.067 0.933
32 H 0.065 0.935
33 H 0.092 0.908
34 H 0.088 0.912
35 H 0.383 0.617
36 H -0.238 1.238
37 H -0.237 1.237
38 H 0.079 0.921
39 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.380 -2.393 3.739 5.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.309 6.309
3 C -0.007 4.007
4 C -0.129 4.129
5 H 0.117 0.883
6 C -0.182 4.182
7 C 0.015 3.985
8 H 0.127 0.873
9 N -0.361 5.361
10 C 0.383 3.617
11 O -0.401 6.401
12 C -0.382 4.382
13 C -0.080 4.080
14 C -0.100 4.100
15 C -0.163 4.163
16 C -0.313 4.313
17 C -0.144 4.144
18 O -0.334 6.334
19 Si 0.548 3.452
20 S 0.469 5.531
21 C -0.176 4.176
22 H 0.060 0.940
23 H 0.105 0.895
24 H 0.060 0.940
25 H 0.069 0.931
26 H 0.070 0.930
27 H 0.112 0.888
28 H 0.094 0.906
29 H 0.234 0.766
30 H 0.173 0.827
31 H 0.086 0.914
32 H 0.084 0.916
33 H 0.110 0.890
34 H 0.106 0.894
35 H 0.232 0.768
36 H -0.161 1.161
37 H -0.161 1.161
38 H 0.097 0.903
39 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -3.503 -1.742 4.521 5.979
hybrid contribution 1.965 0.054 -0.507 2.030
sum -1.538 -1.688 4.015 4.619
Atomic orbital electron populations
1.22759 0.80850 1.02972 1.00021 1.87891 1.19796 1.27842 1.95411
1.22559 0.92950 0.84909 1.00300 1.22621 0.93233 0.98285 0.98760
0.88259 1.23490 0.96954 1.01123 0.96586 1.21848 0.85059 0.95086
0.96519 0.87334 1.45508 1.11478 1.56761 1.22343 1.16913 0.81161
0.79086 0.84523 1.90858 1.82724 1.46672 1.19815 1.24573 0.99681
1.12124 1.01808 1.20721 0.90430 0.96315 1.00542 1.18694 0.98599
0.99614 0.93113 1.20723 0.91218 1.01589 1.02760 1.23201 0.99692
1.08323 1.00101 1.24024 0.87756 0.97229 1.05370 1.86572 1.24274
1.58022 1.64519 0.95464 0.88926 0.83758 0.77038 1.82622 1.06859
1.47471 1.16127 1.23351 0.96961 0.97246 1.00075 0.94014 0.89496
0.94038 0.93104 0.92986 0.88829 0.90578 0.76600 0.82702 0.91412
0.91649 0.88991 0.89395 0.76836 1.16100 1.16065 0.90269 0.88196
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.02 11.01 101.05 1.11 1.09 16
2 O -0.39 -0.64 10.70 -35.23 -0.38 -1.02 16
3 C 0.07 -0.04 5.78 37.16 0.21 0.18 16
4 C -0.11 0.13 3.89 -89.81 -0.35 -0.22 16
5 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16
6 C -0.14 0.03 7.43 -25.92 -0.19 -0.17 16
7 C 0.12 0.01 4.32 -67.12 -0.29 -0.28 16
8 H 0.11 0.16 7.46 -51.93 -0.39 -0.23 16
9 N -0.71 -0.40 5.26 -54.35 -0.29 -0.69 16
10 C 0.60 2.07 7.78 -12.90 -0.10 1.97 16
11 O -0.52 -3.66 16.44 5.18 0.09 -3.58 16
12 C -0.26 -0.61 6.45 -36.79 -0.24 -0.85 16
13 C -0.05 -0.12 9.78 -40.43 -0.40 -0.52 16
14 C -0.09 -0.17 5.75 -106.45 -0.61 -0.78 16
15 C -0.10 -0.08 9.74 36.01 0.35 0.27 16
16 C -0.19 -0.18 5.64 -35.86 -0.20 -0.39 16
17 C -0.03 0.03 2.69 36.00 0.10 0.13 16
18 O -0.53 0.24 10.16 -35.23 -0.36 -0.12 16
19 Si 0.65 -1.04 30.99 -169.99 -5.27 -6.31 16
20 S 0.20 -0.05 19.36 -107.50 -2.08 -2.13 16
21 C -0.14 0.28 7.39 -25.92 -0.19 0.09 16
22 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16
23 H 0.09 -0.12 8.14 -51.92 -0.42 -0.55 16
24 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16
25 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16
26 H 0.05 -0.06 7.84 -51.93 -0.41 -0.47 16
27 H 0.09 -0.06 7.89 -51.93 -0.41 -0.47 16
28 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16
29 H 0.40 -0.63 7.81 -40.82 -0.32 -0.95 16
30 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16
31 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16
32 H 0.06 0.03 8.10 -51.93 -0.42 -0.39 16
33 H 0.09 0.10 5.48 -51.93 -0.28 -0.18 16
34 H 0.09 -0.24 7.96 -51.93 -0.41 -0.65 16
35 H 0.38 -1.72 8.74 45.56 0.40 -1.32 16
36 H -0.24 0.05 7.11 56.52 0.40 0.45 16
37 H -0.24 -0.36 7.11 56.52 0.40 0.04 16
38 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16
39 H 0.10 -0.29 8.10 -51.93 -0.42 -0.71 16
LS Contribution 337.37 15.07 5.08 5.08
Total: 0.00 -7.43 337.37 -9.66 -17.10
By element:
Atomic # 1 Polarization: -3.19 SS G_CDS: -5.67 Total: -8.85 kcal
Atomic # 6 Polarization: 1.31 SS G_CDS: -0.80 Total: 0.51 kcal
Atomic # 7 Polarization: -0.40 SS G_CDS: -0.29 Total: -0.69 kcal
Atomic # 8 Polarization: -4.06 SS G_CDS: -0.65 Total: -4.71 kcal
Atomic # 14 Polarization: -1.04 SS G_CDS: -5.27 Total: -6.31 kcal
Atomic # 16 Polarization: -0.05 SS G_CDS: -2.08 Total: -2.13 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -7.43 -9.66 -17.10 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16535612_6739946.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.076 kcal
(2) G-P(sol) polarization free energy of solvation -7.433 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.097 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds