Wall clock time and date at job start Sun Mar 7 2021 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99698 * 2 1 4 4 C 1.53006 * 109.46622 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84782 * 43.80827 * 4 3 2 6 6 C 1.53781 * 113.60857 * 175.00084 * 4 3 2 7 7 C 1.53781 * 87.07880 * 139.98077 * 6 4 3 8 8 H 1.08996 * 113.61441 * 219.93085 * 7 6 4 9 9 N 1.46507 * 113.61287 * 89.11226 * 7 6 4 10 10 C 1.34776 * 119.99829 * 154.99636 * 9 7 6 11 11 O 1.21285 * 119.99790 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99966 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47128 * 180.02562 * 12 10 9 14 14 C 1.36835 * 125.05917 * 265.02183 * 13 12 10 15 15 C 1.34241 * 109.93699 * 179.97438 * 14 13 12 16 16 C 1.50694 * 126.49987 * 180.02562 * 15 14 13 17 17 O 1.42908 * 109.47142 * 104.99889 * 16 15 14 18 18 Si 1.86302 * 109.47244 * 344.99949 * 16 15 14 19 19 C 1.46494 * 106.99891 * 359.97438 * 15 14 13 20 20 C 1.39592 * 134.03564 * 180.02562 * 19 15 14 21 21 C 1.36662 * 119.76435 * 180.25940 * 20 19 15 22 22 C 1.38795 * 120.52604 * 359.48962 * 21 20 19 23 23 C 1.37785 * 120.66603 * 0.51541 * 22 21 20 24 24 C 1.37695 * 125.06639 * 84.99656 * 13 12 10 25 25 C 1.53774 * 87.08223 * 334.56735 * 7 6 4 26 26 H 1.09005 * 109.47422 * 300.00240 * 1 2 3 27 27 H 1.08997 * 109.47310 * 59.99764 * 1 2 3 28 28 H 1.08996 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46925 * 60.00319 * 3 2 1 30 30 H 1.09000 * 109.46904 * 299.99829 * 3 2 1 31 31 H 1.09003 * 113.62000 * 25.43311 * 6 4 3 32 32 H 1.08999 * 113.68985 * 254.54086 * 6 4 3 33 33 H 0.97002 * 120.00005 * 335.00587 * 9 7 6 34 34 H 1.08992 * 109.47374 * 60.00095 * 12 10 9 35 35 H 1.09004 * 109.46978 * 299.99766 * 12 10 9 36 36 H 1.07999 * 125.03566 * 359.95963 * 14 13 12 37 37 H 1.08994 * 109.47339 * 224.99559 * 16 15 14 38 38 H 0.96696 * 113.99942 * 299.99905 * 17 16 15 39 39 H 1.48497 * 110.00007 * 58.68125 * 18 16 15 40 40 H 1.48502 * 109.99839 * 179.97438 * 18 16 15 41 41 H 1.08002 * 120.11469 * 359.97438 * 20 19 15 42 42 H 1.07993 * 119.73501 * 179.72644 * 21 20 19 43 43 H 1.08001 * 119.66334 * 180.24030 * 22 21 20 44 44 H 1.08001 * 120.11295 * 179.72731 * 23 22 21 45 45 H 1.08997 * 113.61618 * 139.98042 * 25 7 6 46 46 H 1.09003 * 113.61571 * 270.88313 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9004 0.4285 -0.6944 6 6 4.2604 2.5354 -0.1221 7 6 5.2671 1.9996 0.9096 8 1 5.5796 2.7439 1.6419 9 7 6.3953 1.2820 0.3107 10 6 7.5675 1.1985 0.9706 11 8 7.6882 1.7170 2.0603 12 6 8.7281 0.4608 0.3544 13 7 9.8770 0.5128 1.2619 14 6 10.8876 1.4332 1.1988 15 6 11.7803 1.2004 2.1739 16 6 13.0356 1.9882 2.4467 17 8 12.8403 2.8119 3.5981 18 14 13.4277 3.0611 0.9750 19 6 11.3022 0.0360 2.9233 20 6 11.7832 -0.6731 4.0253 21 6 11.0859 -1.7500 4.4962 22 6 9.8971 -2.1382 3.8940 23 6 9.4042 -1.4525 2.8052 24 6 10.1005 -0.3570 2.3058 25 6 4.1442 1.0751 1.4086 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.6736 3.3803 0.2384 32 1 4.6952 2.7112 -1.1060 33 1 6.2986 0.8671 -0.5608 34 1 8.9928 0.9275 -0.5944 35 1 8.4481 -0.5785 0.1825 36 1 10.9569 2.2290 0.4719 37 1 13.8632 1.3022 2.6270 38 1 12.1179 3.4483 3.5085 39 1 12.2936 3.9793 0.6994 40 1 14.6633 3.8437 1.2318 41 1 12.7057 -0.3746 4.5011 42 1 11.4608 -2.3009 5.3460 43 1 9.3554 -2.9890 4.2800 44 1 8.4806 -1.7650 2.3409 45 1 4.4848 0.0708 1.6600 46 1 3.5255 1.5207 2.1876 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:03 Heat of formation + Delta-G solvation = -13.092843 kcal Electronic energy + Delta-G solvation = -28016.351270 eV Core-core repulsion = 24067.493088 eV Total energy + Delta-G solvation = -3948.858182 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.55220 -41.29605 -39.74467 -38.29131 -38.14090 -37.66304 -34.65361 -33.97394 -31.48853 -30.25260 -29.91523 -28.74275 -26.99403 -26.64943 -25.78796 -23.93636 -23.50198 -22.75306 -21.87742 -20.69083 -20.32035 -18.71849 -18.52070 -17.75212 -17.41515 -17.37552 -16.97397 -16.72396 -16.44599 -16.40447 -16.17270 -16.09377 -15.67434 -15.35858 -15.01781 -14.79241 -14.71299 -14.47991 -14.25204 -14.09207 -13.82318 -13.60638 -13.49485 -13.20269 -12.83965 -12.73480 -12.57991 -12.41315 -12.38327 -12.01285 -11.84953 -11.74087 -11.60925 -11.32467 -11.19490 -10.61896 -10.56188 -10.45581 -10.16541 -9.16722 -8.64133 -4.88815 0.13573 0.63029 1.34538 1.39977 1.42489 1.61931 1.69663 2.00240 2.16769 2.77337 2.94112 3.43905 3.49984 3.56893 3.58896 3.67211 3.70816 3.80745 3.85620 3.93888 4.03935 4.15077 4.21515 4.29574 4.32928 4.37088 4.45438 4.49542 4.57853 4.58546 4.60298 4.67800 4.71475 4.72074 4.78330 4.80018 4.83438 4.89449 4.97823 5.06487 5.13242 5.14967 5.50300 5.52911 5.65853 5.73090 5.74814 6.18169 6.21026 6.22318 6.44607 6.54219 7.10703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.064 3.936 4 C -0.101 4.101 5 H 0.104 0.896 6 C -0.121 4.121 7 C 0.115 3.885 8 H 0.080 0.920 9 N -0.694 5.694 10 C 0.492 3.508 11 O -0.573 6.573 12 C 0.088 3.912 13 N -0.466 5.466 14 C 0.075 3.925 15 C -0.215 4.215 16 C -0.057 4.057 17 O -0.556 6.556 18 Si 0.788 3.212 19 C -0.115 4.115 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.135 4.135 24 C 0.091 3.909 25 C -0.146 4.146 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.421 0.579 34 H 0.168 0.832 35 H 0.144 0.856 36 H 0.198 0.802 37 H 0.110 0.890 38 H 0.381 0.619 39 H -0.273 1.273 40 H -0.304 1.304 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.059 0.941 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -1.026 -9.576 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.120 4.120 5 H 0.122 0.878 6 C -0.158 4.158 7 C 0.009 3.991 8 H 0.098 0.902 9 N -0.347 5.347 10 C 0.278 3.722 11 O -0.452 6.452 12 C -0.036 4.036 13 N -0.148 5.148 14 C -0.051 4.051 15 C -0.223 4.223 16 C -0.165 4.165 17 O -0.364 6.364 18 Si 0.691 3.309 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.155 4.155 24 C -0.014 4.014 25 C -0.185 4.185 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.259 0.741 34 H 0.185 0.815 35 H 0.162 0.838 36 H 0.215 0.785 37 H 0.128 0.872 38 H 0.230 0.770 39 H -0.199 1.199 40 H -0.232 1.232 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.078 0.922 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.131 -0.372 -9.106 10.006 hybrid contribution -1.114 0.531 1.180 1.707 sum -5.245 0.158 -7.926 9.506 Atomic orbital electron populations 1.22878 0.79936 1.03557 1.00704 1.87849 1.21001 1.29164 1.95580 1.22695 0.93360 0.84313 1.00895 1.22567 0.92822 0.98993 0.97592 0.87766 1.23262 0.95745 0.96738 1.00103 1.21787 0.85553 0.94753 0.97000 0.90211 1.45491 1.10442 1.55795 1.22967 1.21540 0.84946 0.80267 0.85420 1.90801 1.83646 1.48136 1.22573 1.21995 0.82535 1.05228 0.93839 1.43429 1.19719 1.25291 1.26385 1.22032 0.87861 0.94671 1.00504 1.20711 1.00946 1.00463 1.00150 1.24737 0.96188 0.97471 0.98084 1.86554 1.57509 1.52614 1.39683 0.94171 0.76660 0.79178 0.80854 1.19348 0.96294 0.98117 0.98198 1.20459 1.00012 0.95152 0.95006 1.20918 0.96406 0.98146 1.01784 1.21128 0.96245 1.00084 0.95232 1.20238 1.00654 0.95470 0.99137 1.18397 0.96770 0.94786 0.91489 1.23475 0.97421 1.00124 0.97502 0.93589 0.93093 0.89083 0.92912 0.91990 0.87783 0.88529 0.74115 0.81484 0.83790 0.78520 0.87233 0.77042 1.19913 1.23221 0.86243 0.84561 0.83781 0.85134 0.92201 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -0.95 10.70 -148.98 -1.59 -2.55 16 3 C 0.06 -0.18 5.78 71.98 0.42 0.24 16 4 C -0.10 0.51 3.89 -10.27 -0.04 0.47 16 5 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 6 C -0.12 0.92 7.39 31.12 0.23 1.15 16 7 C 0.12 -0.30 4.32 45.51 0.20 -0.10 16 8 H 0.08 0.24 7.46 -2.39 -0.02 0.23 16 9 N -0.69 4.05 5.26 -440.04 -2.32 1.73 16 10 C 0.49 -0.04 7.90 87.66 0.69 0.65 16 11 O -0.57 -6.92 16.02 -3.04 -0.05 -6.97 16 12 C 0.09 -0.60 6.48 85.63 0.55 -0.05 16 13 N -0.47 -0.97 2.27 -519.99 -1.18 -2.15 16 14 C 0.07 0.12 9.89 83.00 0.82 0.94 16 15 C -0.22 -1.29 5.58 -18.63 -0.10 -1.39 16 16 C -0.06 -0.25 3.06 71.23 0.22 -0.03 16 17 O -0.56 -4.92 12.88 -148.98 -1.92 -6.84 16 18 Si 0.79 -0.82 30.82 68.60 2.11 1.29 16 19 C -0.12 -1.19 6.35 -20.20 -0.13 -1.32 16 20 C -0.09 -0.88 10.05 22.23 0.22 -0.66 16 21 C -0.15 -1.11 9.97 22.03 0.22 -0.89 16 22 C -0.11 -0.62 10.01 22.30 0.22 -0.40 16 23 C -0.13 -0.83 10.00 22.37 0.22 -0.61 16 24 C 0.09 0.71 6.80 39.03 0.27 0.98 16 25 C -0.15 0.21 7.43 31.12 0.23 0.45 16 26 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 27 H 0.05 -0.22 8.14 -2.39 -0.02 -0.23 16 28 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.05 -0.17 7.84 -2.39 -0.02 -0.19 16 30 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.10 -0.86 8.10 -2.39 -0.02 -0.88 16 32 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H 0.42 -5.49 8.70 -92.71 -0.81 -6.30 16 34 H 0.17 -2.60 8.12 -2.39 -0.02 -2.62 16 35 H 0.14 -1.67 8.14 -2.39 -0.02 -1.69 16 36 H 0.20 -1.07 6.27 -2.91 -0.02 -1.09 16 37 H 0.11 0.44 7.96 -2.39 -0.02 0.42 16 38 H 0.38 1.49 8.70 -74.06 -0.64 0.84 16 39 H -0.27 -0.24 7.00 99.48 0.70 0.45 16 40 H -0.30 -2.08 7.11 99.48 0.71 -1.37 16 41 H 0.12 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.14 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 44 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 45 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.09 -0.05 7.90 -2.39 -0.02 -0.07 16 Total: 0.00 -28.21 386.38 0.12 -28.09 By element: Atomic # 1 Polarization: -12.80 SS G_CDS: -0.43 Total: -13.23 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.49 Total: 0.61 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -3.50 Total: -0.41 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -3.56 Total: -16.35 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.11 Total: 1.29 kcal Total: -28.21 0.12 -28.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.001 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds