Wall clock time and date at job start Sun Mar 7 2021 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38236 * 120.00128 * 119.72458 * 4 2 1 6 6 C 1.38238 * 119.99670 * 179.79167 * 5 4 2 7 7 C 1.38233 * 120.00040 * 0.44092 * 6 5 4 8 8 C 1.50700 * 119.99639 * 179.83306 * 7 6 5 9 9 C 1.50693 * 109.47290 * 269.97626 * 8 7 6 10 10 O 1.21279 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00001 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.85228 * 334.66897 * 12 11 9 14 14 C 1.53788 * 113.61433 * 105.85841 * 12 11 9 15 15 C 1.53954 * 87.01788 * 139.95487 * 14 12 11 16 16 H 1.09002 * 113.54220 * 89.18774 * 15 14 12 17 17 C 1.53001 * 113.74230 * 220.05912 * 15 14 12 18 18 O 1.42900 * 109.46804 * 272.59700 * 17 15 14 19 19 C 1.35902 * 116.99890 * 179.97438 * 18 17 15 20 20 C 1.38735 * 120.05229 * 359.72697 * 19 18 17 21 21 C 1.38148 * 119.94114 * 179.70182 * 20 19 18 22 22 C 1.38271 * 120.05575 * 0.59372 * 21 20 19 23 23 C 1.38264 * 120.11142 * 359.68082 * 22 21 20 24 24 C 1.38152 * 120.05387 * 0.02562 * 23 22 21 25 25 C 1.53773 * 113.61656 * 203.46923 * 12 11 9 26 26 C 1.38234 * 120.00074 * 359.81276 * 7 6 5 27 27 C 1.38234 * 119.99669 * 300.00231 * 4 2 1 28 28 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 29 29 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 30 30 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 31 31 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 32 32 H 1.07995 * 119.99649 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.99581 * 180.27186 * 6 5 4 34 34 H 1.08998 * 109.47249 * 29.98436 * 8 7 6 35 35 H 1.09006 * 109.46680 * 149.98091 * 8 7 6 36 36 H 0.96996 * 119.99761 * 359.97438 * 11 9 8 37 37 H 1.09002 * 113.61404 * 254.53202 * 14 12 11 38 38 H 1.08996 * 113.61390 * 25.43654 * 14 12 11 39 39 H 1.08998 * 109.47134 * 32.59510 * 17 15 14 40 40 H 1.08997 * 109.47417 * 152.59276 * 17 15 14 41 41 H 1.07997 * 120.03346 * 359.97438 * 20 19 18 42 42 H 1.08000 * 119.97178 * 180.27504 * 21 20 19 43 43 H 1.07998 * 119.94281 * 179.69993 * 22 21 20 44 44 H 1.07995 * 119.97786 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.02538 * 180.02562 * 24 23 22 46 46 H 1.09002 * 113.61363 * 334.56166 * 25 12 11 47 47 H 1.08994 * 113.62043 * 105.47032 * 25 12 11 48 48 H 1.07999 * 119.99614 * 180.02562 * 26 7 6 49 49 H 1.08003 * 120.00106 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0369 -2.1433 6 6 3.1858 -0.6899 -3.2698 7 6 2.8525 -2.0135 -3.4880 8 6 3.3557 -2.7242 -4.7180 9 6 2.3632 -2.5523 -5.8388 10 8 1.3470 -1.9159 -5.6567 11 7 2.6043 -3.1068 -7.0434 12 6 1.6397 -2.9392 -8.1332 13 1 0.6257 -2.7576 -7.7768 14 6 2.0989 -1.9477 -9.2154 15 6 1.5064 -2.9242 -10.2477 16 1 0.4558 -2.7378 -10.4704 17 6 2.3613 -3.0835 -11.5065 18 8 2.0035 -2.0771 -12.4557 19 6 2.6742 -2.0775 -13.6377 20 6 3.6605 -3.0234 -13.8766 21 6 4.3366 -3.0255 -15.0813 22 6 4.0396 -2.0783 -16.0438 23 6 3.0610 -1.1309 -15.8059 24 6 2.3778 -1.1284 -14.6051 25 6 1.7278 -4.0355 -9.2079 26 6 2.0582 -2.6855 -2.5779 27 6 1.5974 -2.0338 -1.4492 28 1 -0.3933 0.4417 -0.7649 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.9789 0.9982 -1.9743 33 1 3.8066 -0.1650 -3.9806 34 1 4.3156 -2.3016 -5.0147 35 1 3.4776 -3.7853 -4.5002 36 1 3.4168 -3.6161 -7.1890 37 1 1.5838 -0.9879 -9.1751 38 1 3.1820 -1.8455 -9.2826 39 1 3.4146 -2.9792 -11.2459 40 1 2.1902 -4.0690 -11.9397 41 1 3.8966 -3.7603 -13.1232 42 1 5.1015 -3.7645 -15.2695 43 1 4.5727 -2.0786 -16.9830 44 1 2.8305 -0.3923 -16.5593 45 1 1.6132 -0.3884 -14.4199 46 1 2.7093 -4.5051 -9.2731 47 1 0.9137 -4.7587 -9.1618 48 1 1.7982 -3.7198 -2.7483 49 1 0.9767 -2.5588 -0.7381 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16536076_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:31 Heat of formation + Delta-G solvation = -29.100375 kcal Electronic energy + Delta-G solvation = -29137.013501 eV Core-core repulsion = 24996.434811 eV Total energy + Delta-G solvation = -4140.578691 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.53959 -41.03306 -40.43142 -39.38783 -38.10427 -37.64190 -34.68103 -33.97822 -32.02024 -31.90447 -31.10185 -29.99659 -28.87235 -26.89880 -25.92525 -24.34480 -23.78109 -23.38337 -22.73025 -21.95001 -21.46045 -20.68690 -19.19311 -18.48586 -18.07245 -17.81261 -17.13644 -17.00771 -16.91058 -16.67153 -16.38483 -16.27684 -16.08105 -16.00893 -15.48714 -15.34065 -15.00064 -14.72029 -14.46522 -14.39655 -14.26864 -14.13325 -13.87726 -13.68227 -13.42621 -13.30001 -13.13441 -13.00360 -12.81650 -12.59400 -12.42244 -12.20930 -12.09397 -11.97159 -11.89774 -11.73259 -11.54905 -11.38460 -10.88105 -10.53731 -10.08817 -9.95215 -9.82458 -9.58654 -9.15221 -4.92268 0.27353 0.39118 0.50560 0.51057 1.33720 1.61539 1.65619 2.00217 2.01275 2.22875 2.80760 2.85538 3.27150 3.36141 3.42212 3.56438 3.63995 3.64524 3.78792 3.84280 3.86930 3.90691 3.94016 4.05360 4.11523 4.17641 4.20771 4.24039 4.26579 4.36936 4.45760 4.48450 4.49584 4.51121 4.58316 4.59835 4.66119 4.71867 4.73608 4.85390 4.93600 5.01774 5.05677 5.10573 5.15232 5.34945 5.41144 5.46481 5.47057 5.58083 5.61169 5.61393 5.82532 6.03573 6.42476 6.45695 6.46074 7.20476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.074 4.074 3 Si 0.683 3.317 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.063 4.063 8 C -0.104 4.104 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.724 5.724 12 C 0.124 3.876 13 H 0.117 0.883 14 C -0.145 4.145 15 C -0.108 4.108 16 H 0.107 0.893 17 C 0.072 3.928 18 O -0.313 6.313 19 C 0.129 3.871 20 C -0.211 4.211 21 C -0.081 4.081 22 C -0.159 4.159 23 C -0.080 4.080 24 C -0.153 4.153 25 C -0.136 4.136 26 C -0.104 4.104 27 C -0.091 4.091 28 H 0.377 0.623 29 H 0.118 0.882 30 H -0.261 1.261 31 H -0.258 1.258 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 -3.600 -2.262 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.184 4.184 3 Si 0.584 3.416 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.064 4.064 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.402 6.402 11 N -0.375 5.375 12 C 0.019 3.981 13 H 0.135 0.865 14 C -0.184 4.184 15 C -0.127 4.127 16 H 0.125 0.875 17 C -0.003 4.003 18 O -0.227 6.227 19 C 0.084 3.916 20 C -0.230 4.230 21 C -0.099 4.099 22 C -0.178 4.178 23 C -0.098 4.098 24 C -0.172 4.172 25 C -0.174 4.174 26 C -0.122 4.122 27 C -0.109 4.109 28 H 0.225 0.775 29 H 0.136 0.864 30 H -0.186 1.186 31 H -0.183 1.183 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.236 0.764 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.140 0.860 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.163 -2.480 -1.473 5.914 hybrid contribution -0.483 -0.700 -0.770 1.147 sum 4.680 -3.179 -2.243 6.086 Atomic orbital electron populations 1.86582 1.17715 1.79981 1.49385 1.25024 0.83982 1.10914 0.98507 0.95103 0.91670 0.74614 0.80164 1.20272 0.99303 0.95208 0.96979 1.20941 0.98319 0.99381 0.94543 1.20903 0.99981 0.93754 0.97135 1.19267 0.98190 0.94249 0.94687 1.20704 0.98903 1.02979 0.91809 1.20628 0.87373 0.78720 0.83162 1.90759 1.27706 1.39451 1.82252 1.46000 1.24438 1.55766 1.11345 1.22455 0.94789 0.96138 0.84704 0.86504 1.23585 1.01547 0.98808 0.94432 1.22396 1.01157 0.97665 0.91445 0.87459 1.22798 0.98766 0.90716 0.88024 1.86084 1.59629 1.53100 1.23841 1.19032 0.91773 0.94921 0.85869 1.21263 1.00187 1.01627 0.99896 1.20994 0.98271 0.97884 0.92720 1.21123 0.99816 0.96725 1.00093 1.21031 0.94785 0.98012 0.95976 1.20500 1.03415 1.00094 0.93194 1.23348 1.03402 0.96696 0.93942 1.21010 0.97042 1.00015 0.94125 1.20957 0.98695 0.93866 0.97367 0.77548 0.86433 1.18553 1.18279 0.85595 0.85810 0.87635 0.87668 0.76410 0.90409 0.89528 0.91815 0.91684 0.85605 0.85732 0.85777 0.85231 0.85161 0.89159 0.89869 0.86017 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.35 12.77 -35.23 -0.45 -1.80 16 2 C -0.07 -0.06 2.82 36.01 0.10 0.04 16 3 Si 0.68 0.02 29.79 -169.99 -5.06 -5.05 16 4 C -0.12 -0.17 5.39 -104.62 -0.56 -0.73 16 5 C -0.11 -0.10 8.67 -39.58 -0.34 -0.45 16 6 C -0.10 -0.08 9.70 -39.58 -0.38 -0.47 16 7 C -0.06 -0.05 4.37 -104.63 -0.46 -0.51 16 8 C -0.10 0.21 5.83 -29.04 -0.17 0.04 16 9 C 0.51 0.32 7.82 -10.99 -0.09 0.24 16 10 O -0.53 -2.85 15.65 5.56 0.09 -2.77 16 11 N -0.72 1.47 5.36 -53.02 -0.28 1.19 16 12 C 0.12 -0.16 4.21 -67.12 -0.28 -0.44 16 13 H 0.12 0.10 7.50 -51.93 -0.39 -0.29 16 14 C -0.14 0.16 7.45 -25.82 -0.19 -0.03 16 15 C -0.11 0.19 4.01 -89.71 -0.36 -0.17 16 16 H 0.11 -0.12 8.14 -51.93 -0.42 -0.54 16 17 C 0.07 -0.08 4.58 37.16 0.17 0.09 16 18 O -0.31 -0.62 10.14 -19.43 -0.20 -0.81 16 19 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 20 C -0.21 -0.20 9.04 -39.43 -0.36 -0.55 16 21 C -0.08 -0.04 10.04 -39.60 -0.40 -0.44 16 22 C -0.16 -0.10 10.04 -39.56 -0.40 -0.49 16 23 C -0.08 -0.07 10.04 -39.60 -0.40 -0.46 16 24 C -0.15 -0.28 9.99 -39.43 -0.39 -0.68 16 25 C -0.14 0.44 7.39 -25.92 -0.19 0.25 16 26 C -0.10 -0.13 9.70 -39.58 -0.38 -0.51 16 27 C -0.09 -0.16 9.61 -39.58 -0.38 -0.54 16 28 H 0.38 0.06 8.70 45.56 0.40 0.46 16 29 H 0.12 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 31 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 32 H 0.13 -0.10 4.88 -52.49 -0.26 -0.36 16 33 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 34 H 0.11 -0.44 8.09 -51.93 -0.42 -0.86 16 35 H 0.11 -0.43 8.09 -51.93 -0.42 -0.85 16 36 H 0.40 -2.02 8.71 -40.82 -0.36 -2.37 16 37 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.09 -0.14 7.91 -51.93 -0.41 -0.55 16 39 H 0.06 -0.13 7.36 -51.93 -0.38 -0.51 16 40 H 0.06 -0.13 7.68 -51.93 -0.40 -0.52 16 41 H 0.13 -0.13 6.30 -52.49 -0.33 -0.46 16 42 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 43 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 44 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 45 H 0.13 0.12 8.06 -52.48 -0.42 -0.30 16 46 H 0.09 -0.42 8.07 -51.93 -0.42 -0.84 16 47 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 48 H 0.12 -0.03 8.06 -52.49 -0.42 -0.45 16 49 H 0.13 0.15 8.06 -52.48 -0.42 -0.27 16 LS Contribution 407.40 15.07 6.14 6.14 Total: 0.00 -9.35 407.40 -12.72 -22.07 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: -7.23 Total: -13.16 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -5.73 Total: -5.81 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -0.28 Total: 1.19 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.56 Total: -5.38 kcal Atomic # 14 Polarization: 0.02 SS G_CDS: -5.06 Total: -5.05 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -9.35 -12.72 -22.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.028 kcal (2) G-P(sol) polarization free energy of solvation -9.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds