Wall clock time and date at job start Sun Mar 7 2021 04:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.46660 * 2 1 4 4 C 1.50703 * 109.47038 * 119.99800 * 2 1 3 5 5 C 1.34832 * 125.65064 * 65.26126 * 4 2 1 6 6 C 1.40795 * 107.04954 * 180.13041 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.62775 * 6 5 4 8 8 C 1.47568 * 125.94735 * 180.22729 * 7 6 5 9 9 C 1.39560 * 119.95817 * 179.97438 * 8 7 6 10 10 C 1.38319 * 119.81602 * 179.97438 * 9 8 7 11 11 O 1.35679 * 120.13645 * 180.02562 * 10 9 8 12 12 C 1.40365 * 119.72132 * 0.02562 * 10 9 8 13 13 C 1.47292 * 120.04214 * 180.02562 * 12 10 9 14 14 O 1.21627 * 120.00425 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99860 * 180.02562 * 13 12 10 16 16 C 1.46507 * 119.99889 * 180.02562 * 15 13 12 17 17 H 1.08995 * 112.85145 * 336.19408 * 16 15 13 18 18 C 1.53777 * 113.61551 * 107.50376 * 16 15 13 19 19 C 1.53780 * 87.08284 * 139.97833 * 18 16 15 20 20 H 1.09002 * 113.61513 * 89.11699 * 19 18 16 21 21 C 1.53000 * 113.69127 * 220.00857 * 19 18 16 22 22 O 1.42896 * 109.46944 * 272.53314 * 21 19 18 23 23 C 1.35905 * 117.00169 * 180.02562 * 22 21 19 24 24 C 1.38732 * 120.05102 * 359.72746 * 23 22 21 25 25 C 1.38150 * 119.93731 * 179.74430 * 24 23 22 26 26 C 1.38263 * 120.05919 * 0.50862 * 25 24 23 27 27 C 1.38267 * 120.10757 * 359.76518 * 26 25 24 28 28 C 1.38139 * 120.05785 * 359.97438 * 27 26 25 29 29 C 1.53777 * 87.07894 * 334.56774 * 19 18 16 30 30 C 1.39916 * 119.91049 * 0.02562 * 12 10 9 31 31 C 1.36390 * 120.18362 * 359.73283 * 30 12 10 32 32 O 1.34226 * 125.65132 * 244.97052 * 4 2 1 33 33 H 0.96706 * 114.00024 * 299.99965 * 1 2 3 34 34 H 1.08997 * 109.47168 * 240.00260 * 2 1 3 35 35 H 1.48504 * 109.99670 * 178.68114 * 3 2 1 36 36 H 1.48491 * 110.00131 * 299.99913 * 3 2 1 37 37 H 1.08005 * 126.47500 * 0.02562 * 5 4 2 38 38 H 1.08002 * 126.63743 * 179.89704 * 6 5 4 39 39 H 1.08003 * 120.08978 * 0.02562 * 9 8 7 40 40 H 0.96701 * 113.99590 * 90.00142 * 11 10 9 41 41 H 0.96996 * 120.00050 * 0.02562 * 15 13 12 42 42 H 1.09001 * 113.61574 * 254.52641 * 18 16 15 43 43 H 1.09004 * 113.61471 * 25.42546 * 18 16 15 44 44 H 1.08997 * 109.47273 * 32.53307 * 21 19 18 45 45 H 1.08996 * 109.46955 * 152.53794 * 21 19 18 46 46 H 1.07998 * 120.03019 * 359.97438 * 24 23 22 47 47 H 1.07998 * 119.96751 * 180.22840 * 25 24 23 48 48 H 1.07993 * 119.94564 * 179.74574 * 26 25 24 49 49 H 1.08000 * 119.96782 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.02519 * 179.97438 * 28 27 26 51 51 H 1.09005 * 113.61315 * 270.87838 * 29 19 18 52 52 H 1.08999 * 113.69340 * 139.99543 * 29 19 18 53 53 H 1.08004 * 119.90852 * 180.02562 * 30 12 10 54 54 H 1.08004 * 119.85796 * 180.26048 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7610 -2.0190 1.5070 6 6 2.3803 -2.2628 2.7477 7 6 2.9081 -1.0784 3.1617 8 6 3.6575 -0.8542 4.4130 9 6 4.1457 0.4180 4.7145 10 6 4.8473 0.6250 5.8884 11 8 5.3244 1.8592 6.1883 12 6 5.0636 -0.4472 6.7681 13 6 5.8093 -0.2346 8.0204 14 8 6.2378 0.8706 8.2931 15 7 6.0170 -1.2649 8.8643 16 6 6.7583 -1.0533 10.1101 17 1 7.4240 -0.1915 10.0655 18 6 5.8727 -1.0855 11.3669 19 6 7.0097 -1.8614 12.0525 20 1 7.7438 -1.2200 12.5402 21 6 6.5225 -2.9982 12.9531 22 8 6.2640 -2.4903 14.2635 23 6 5.8213 -3.3775 15.1929 24 6 5.6341 -4.7085 14.8491 25 6 5.1890 -5.6094 15.7971 26 6 4.9202 -5.1836 17.0848 27 6 5.1007 -3.8565 17.4284 28 6 5.5506 -2.9527 16.4855 29 6 7.4332 -2.3257 10.6490 30 6 4.5700 -1.7181 6.4538 31 6 3.8744 -1.9169 5.2976 32 8 2.6272 -0.1464 2.2302 33 1 -0.3933 0.4417 0.7651 34 1 1.7923 -0.5138 -0.8900 35 1 3.5345 1.7704 0.0321 36 1 1.5614 2.4679 -1.2084 37 1 1.2453 -2.7430 0.8936 38 1 2.4311 -3.2078 3.2681 39 1 3.9754 1.2387 4.0335 40 1 4.7078 2.4073 6.6928 41 1 5.6757 -2.1464 8.6467 42 1 5.6927 -0.1014 11.7996 43 1 4.9596 -1.6678 11.2428 44 1 5.6068 -3.4217 12.5404 45 1 7.2882 -3.7719 13.0079 46 1 5.8396 -5.0406 13.8422 47 1 5.0466 -6.6463 15.5309 48 1 4.5685 -5.8887 17.8233 49 1 4.8896 -3.5263 18.4348 50 1 5.6910 -1.9162 16.7543 51 1 6.9468 -3.2471 10.3287 52 1 8.5129 -2.3435 10.5007 53 1 4.7361 -2.5430 7.1310 54 1 3.4920 -2.8992 5.0622 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12807986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:35 Heat of formation + Delta-G solvation = -38.845835 kcal Electronic energy + Delta-G solvation = -37906.268002 eV Core-core repulsion = 32743.223911 eV Total energy + Delta-G solvation = -5163.044091 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.74725 -41.73250 -41.14892 -40.33303 -39.11512 -38.13157 -38.01346 -37.81347 -34.90643 -34.20176 -33.24964 -31.99930 -31.33204 -31.03838 -30.47490 -29.03123 -27.08476 -26.72555 -25.00142 -24.10593 -23.96280 -23.34861 -22.70386 -22.28221 -21.83532 -21.34602 -20.75285 -19.70617 -19.18825 -18.67276 -18.52184 -17.80220 -17.67396 -17.39421 -17.04228 -16.91181 -16.69583 -16.62239 -16.40883 -16.17057 -15.96138 -15.80977 -15.74027 -15.40377 -15.25046 -14.82526 -14.43625 -14.38018 -14.32716 -14.19925 -14.05880 -13.99096 -13.87738 -13.59351 -13.54124 -13.46031 -13.24521 -12.96774 -12.82921 -12.72152 -12.54784 -12.35640 -12.27301 -12.03210 -11.89960 -11.81101 -11.62842 -11.28199 -11.13397 -10.89347 -10.73699 -10.58775 -10.08295 -9.95872 -9.94754 -9.16855 -9.01779 -5.06635 -0.79439 0.14936 0.38693 0.48995 0.64047 1.12485 1.39233 1.45330 1.74042 1.86254 1.91218 2.01074 2.26901 2.64186 2.84488 3.01788 3.28755 3.40214 3.42119 3.51724 3.61355 3.66976 3.76699 3.80500 3.87130 3.90982 3.97806 3.98549 4.00871 4.21496 4.24779 4.28000 4.30838 4.30926 4.38306 4.40532 4.50350 4.55493 4.63036 4.69067 4.70017 4.72131 4.75388 4.79642 4.82210 4.89260 4.99105 5.04148 5.06706 5.08140 5.10100 5.20433 5.23847 5.35105 5.42326 5.48143 5.52198 5.56032 5.61228 5.86459 5.96381 6.47344 6.48983 6.59424 6.70471 7.17417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.768 3.232 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.025 3.975 9 C -0.153 4.153 10 C 0.160 3.840 11 O -0.496 6.496 12 C -0.180 4.180 13 C 0.555 3.445 14 O -0.565 6.565 15 N -0.701 5.701 16 C 0.118 3.882 17 H 0.094 0.906 18 C -0.143 4.143 19 C -0.105 4.105 20 H 0.096 0.904 21 C 0.069 3.931 22 O -0.333 6.333 23 C 0.112 3.888 24 C -0.217 4.217 25 C -0.088 4.088 26 C -0.169 4.169 27 C -0.088 4.088 28 C -0.176 4.176 29 C -0.118 4.118 30 C -0.051 4.051 31 C -0.110 4.110 32 O -0.175 6.175 33 H 0.399 0.601 34 H 0.138 0.862 35 H -0.298 1.298 36 H -0.277 1.277 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.139 0.861 40 H 0.409 0.591 41 H 0.416 0.584 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.129 0.871 51 H 0.116 0.884 52 H 0.088 0.912 53 H 0.174 0.826 54 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 -7.888 1.569 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.673 3.327 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.172 4.172 10 C 0.114 3.886 11 O -0.309 6.309 12 C -0.184 4.184 13 C 0.344 3.656 14 O -0.445 6.445 15 N -0.353 5.353 16 C 0.013 3.987 17 H 0.112 0.888 18 C -0.181 4.181 19 C -0.124 4.124 20 H 0.114 0.886 21 C -0.006 4.006 22 O -0.247 6.247 23 C 0.067 3.933 24 C -0.235 4.235 25 C -0.106 4.106 26 C -0.187 4.187 27 C -0.106 4.106 28 C -0.195 4.195 29 C -0.156 4.156 30 C -0.069 4.069 31 C -0.128 4.128 32 O -0.072 6.072 33 H 0.250 0.750 34 H 0.155 0.845 35 H -0.225 1.225 36 H -0.203 1.203 37 H 0.183 0.817 38 H 0.200 0.800 39 H 0.157 0.843 40 H 0.269 0.731 41 H 0.255 0.745 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.158 0.842 49 H 0.163 0.837 50 H 0.147 0.853 51 H 0.134 0.866 52 H 0.106 0.894 53 H 0.191 0.809 54 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.512 -6.477 0.532 6.967 hybrid contribution -0.268 -0.422 -0.149 0.521 sum -2.780 -6.899 0.383 7.448 Atomic orbital electron populations 1.86534 1.15836 1.82077 1.50348 1.24394 0.85442 1.10805 0.92759 0.93384 0.78064 0.75900 0.85364 1.23225 1.00535 0.94325 0.92263 1.21836 1.04227 0.95728 0.98476 1.22240 1.00865 0.98955 0.97011 1.20591 1.04564 0.87974 0.91311 1.17952 0.95446 0.93936 0.90212 1.21585 0.99460 0.98185 0.97947 1.18506 0.92190 0.85773 0.92160 1.84730 1.45730 1.23637 1.76832 1.20545 1.05604 0.96174 0.96065 1.18300 0.79270 0.84542 0.83510 1.90824 1.51730 1.25543 1.76405 1.45750 1.56587 1.12268 1.20739 1.22444 0.94418 0.99889 0.81925 0.88764 1.23554 0.98187 1.01038 0.95369 1.22297 0.98924 0.97101 0.94076 0.88565 1.22977 1.01145 0.96901 0.79555 1.86059 1.80704 1.36944 1.21016 1.19249 0.95195 0.89199 0.89658 1.21517 1.07527 0.92408 1.02067 1.21329 0.96026 1.00307 0.92918 1.21425 1.03362 0.96445 0.97505 1.21282 0.96471 0.93195 0.99608 1.20706 1.05864 1.01389 0.91503 1.23313 1.02396 0.97640 0.92221 1.21171 0.93715 0.95125 0.96869 1.21060 0.99353 0.99327 0.93043 1.83923 1.57886 1.38549 1.26886 0.74983 0.84467 1.22516 1.20279 0.81681 0.80032 0.84279 0.73107 0.74519 0.92368 0.88350 0.90404 0.90595 0.83708 0.83710 0.84156 0.83742 0.85318 0.86554 0.89377 0.80921 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.08 12.88 -148.98 -1.92 -0.83 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.61 32.11 68.60 2.20 1.60 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 5 C -0.18 0.08 10.78 22.11 0.24 0.32 16 6 C -0.17 0.35 10.26 22.40 0.23 0.58 16 7 C 0.00 0.00 7.02 24.24 0.17 0.18 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.15 -0.41 9.65 22.61 0.22 -0.20 16 10 C 0.16 0.76 6.71 22.81 0.15 0.91 16 11 O -0.50 -3.73 11.56 -68.97 -0.80 -4.53 16 12 C -0.18 -0.28 5.89 -19.97 -0.12 -0.40 16 13 C 0.56 2.63 7.75 86.62 0.67 3.30 16 14 O -0.57 -7.85 14.74 16.88 0.25 -7.60 16 15 N -0.70 2.16 5.30 -443.42 -2.35 -0.19 16 16 C 0.12 -0.23 4.24 45.51 0.19 -0.04 16 17 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 18 C -0.14 0.32 7.43 31.12 0.23 0.55 16 19 C -0.10 0.41 4.01 -10.27 -0.04 0.37 16 20 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 21 C 0.07 -0.24 4.58 71.98 0.33 0.09 16 22 O -0.33 -1.37 10.14 -92.48 -0.94 -2.30 16 23 C 0.11 0.49 6.69 22.50 0.15 0.64 16 24 C -0.22 -0.18 9.04 22.37 0.20 0.02 16 25 C -0.09 0.01 10.04 22.25 0.22 0.24 16 26 C -0.17 -0.07 10.04 22.28 0.22 0.15 16 27 C -0.09 -0.14 10.04 22.25 0.22 0.08 16 28 C -0.18 -0.78 9.99 22.36 0.22 -0.56 16 29 C -0.12 0.91 7.39 31.12 0.23 1.14 16 30 C -0.05 0.31 9.47 22.24 0.21 0.52 16 31 C -0.11 0.64 9.48 22.26 0.21 0.85 16 32 O -0.17 -0.48 8.79 -6.02 -0.05 -0.53 16 33 H 0.40 -3.82 8.70 -74.05 -0.64 -4.47 16 34 H 0.14 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H -0.30 -2.02 7.11 99.48 0.71 -1.32 16 36 H -0.28 -1.18 7.11 99.48 0.71 -0.48 16 37 H 0.17 -0.50 8.06 -2.91 -0.02 -0.53 16 38 H 0.18 -1.51 7.24 -2.91 -0.02 -1.53 16 39 H 0.14 0.34 7.90 -2.91 -0.02 0.32 16 40 H 0.41 0.12 9.06 -74.06 -0.67 -0.56 16 41 H 0.42 -4.42 6.73 -92.71 -0.62 -5.05 16 42 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.10 -0.45 7.90 -2.38 -0.02 -0.47 16 44 H 0.08 -0.49 7.36 -2.39 -0.02 -0.51 16 45 H 0.08 -0.42 7.67 -2.39 -0.02 -0.44 16 46 H 0.15 -0.59 6.30 -2.91 -0.02 -0.61 16 47 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 48 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 49 H 0.14 -0.37 8.06 -2.91 -0.02 -0.40 16 50 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 51 H 0.12 -1.47 8.08 -2.38 -0.02 -1.49 16 52 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 53 H 0.17 -2.50 6.38 -2.91 -0.02 -2.51 16 54 H 0.17 -2.06 6.95 -2.91 -0.02 -2.08 16 Total: 0.00 -29.04 455.70 -0.10 -29.13 By element: Atomic # 1 Polarization: -22.84 SS G_CDS: -0.91 Total: -23.75 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.42 Total: 9.00 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.35 Total: -0.19 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -3.46 Total: -15.79 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.20 Total: 1.60 kcal Total: -29.04 -0.10 -29.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12807986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.712 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds