Wall clock time and date at job start Sun Mar 7 2021 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37880 * 126.45675 * 2 1 4 4 C 1.46677 * 126.23127 * 359.97438 * 3 2 1 5 5 O 1.21701 * 119.99978 * 0.02562 * 4 3 2 6 6 N 1.34769 * 119.99958 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00298 * 180.02562 * 6 4 3 8 8 H 1.09004 * 112.90729 * 23.74977 * 7 6 4 9 9 C 1.53774 * 113.62009 * 155.00208 * 7 6 4 10 10 C 1.53772 * 87.08661 * 139.97933 * 9 7 6 11 11 H 1.09007 * 113.61079 * 89.19941 * 10 9 7 12 12 C 1.53001 * 113.61979 * 220.01998 * 10 9 7 13 13 O 1.42897 * 109.47411 * 184.99970 * 12 10 9 14 14 C 1.35900 * 117.00265 * 179.97438 * 13 12 10 15 15 C 1.38726 * 120.05752 * 179.97438 * 14 13 12 16 16 C 1.38149 * 119.94477 * 180.02562 * 15 14 13 17 17 C 1.38266 * 120.05411 * 0.28574 * 16 15 14 18 18 C 1.38264 * 120.10762 * 359.44038 * 17 16 15 19 19 C 1.38144 * 120.05928 * 0.55731 * 18 17 16 20 20 C 1.53785 * 87.08276 * 334.56987 * 10 9 7 21 21 N 1.37646 * 107.53198 * 180.25665 * 3 2 1 22 22 C 1.35532 * 108.64764 * 359.62538 * 21 3 2 23 23 C 1.50699 * 125.56841 * 180.18368 * 22 21 3 24 24 O 1.42901 * 109.46986 * 65.24706 * 23 22 21 25 25 Si 1.86292 * 109.47417 * 185.25094 * 23 22 21 26 26 C 1.35450 * 108.87113 * 0.37531 * 22 21 3 27 27 H 1.09005 * 109.46851 * 90.00767 * 1 2 3 28 28 H 1.09000 * 109.47412 * 210.00206 * 1 2 3 29 29 H 1.08992 * 109.47446 * 330.00910 * 1 2 3 30 30 H 0.97004 * 120.00199 * 0.02562 * 6 4 3 31 31 H 1.09003 * 113.61558 * 25.42585 * 9 7 6 32 32 H 1.09004 * 113.69527 * 254.54438 * 9 7 6 33 33 H 1.08997 * 109.46746 * 64.99655 * 12 10 9 34 34 H 1.08995 * 109.46765 * 304.99935 * 12 10 9 35 35 H 1.08000 * 120.02799 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.97030 * 179.97438 * 16 15 14 37 37 H 1.07993 * 119.94215 * 179.70418 * 17 16 15 38 38 H 1.08007 * 119.96975 * 180.26053 * 18 17 16 39 39 H 1.08006 * 120.02939 * 179.70744 * 19 18 17 40 40 H 1.08991 * 113.61560 * 139.97461 * 20 10 9 41 41 H 1.08998 * 113.61222 * 270.88341 * 20 10 9 42 42 H 0.96996 * 125.67889 * 179.73344 * 21 3 2 43 43 H 1.09001 * 109.46884 * 305.24961 * 23 22 21 44 44 H 0.96697 * 114.00224 * 60.00443 * 24 23 22 45 45 H 1.48498 * 110.00257 * 58.67706 * 25 23 22 46 46 H 1.48506 * 110.00227 * 180.02562 * 25 23 22 47 47 H 1.07997 * 126.07312 * 179.78765 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1090 0.0000 4 6 1.8898 2.5093 -0.0005 5 8 0.7025 2.7766 -0.0006 6 7 2.8035 3.4999 -0.0010 7 6 2.3677 4.8986 -0.0009 8 1 1.3642 5.0303 0.4038 9 6 3.4037 5.8668 0.5939 10 6 3.0207 6.8433 -0.5305 11 1 2.1967 7.5076 -0.2699 12 6 4.2160 7.5864 -1.1306 13 8 3.7512 8.5487 -2.0792 14 6 4.6931 9.3000 -2.7079 15 6 4.3123 10.2530 -3.6414 16 6 5.2718 11.0151 -4.2795 17 6 6.6109 10.8246 -3.9928 18 6 6.9925 9.8793 -3.0587 19 6 6.0370 9.1147 -2.4179 20 6 2.5883 5.6126 -1.3450 21 7 3.6283 0.6626 -0.0059 22 6 3.6218 -0.6927 -0.0011 23 6 4.8434 -1.5752 -0.0010 24 8 5.5629 -1.3925 1.2200 25 14 4.3222 -3.3572 -0.1541 26 6 2.3380 -1.1247 -0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5136 30 1 3.7499 3.2869 -0.0013 31 1 4.4294 5.5040 0.5267 32 1 3.1463 6.2256 1.5905 33 1 4.8740 6.8741 -1.6281 34 1 4.7639 8.0941 -0.3368 35 1 3.2667 10.3991 -3.8690 36 1 4.9758 11.7569 -5.0066 37 1 7.3596 11.4180 -4.4962 38 1 8.0390 9.7352 -2.8335 39 1 6.3359 8.3731 -1.6918 40 1 1.6713 5.7657 -1.9138 41 1 3.3911 5.1804 -1.9424 42 1 4.4190 1.2244 -0.0109 43 1 5.4831 -1.3101 -0.8428 44 1 5.0538 -1.6100 2.0129 45 1 3.5456 -3.5536 -1.4045 46 1 5.5180 -4.2379 -0.1547 47 1 2.0136 -2.1548 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_13940406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:01:06 Heat of formation + Delta-G solvation = -10.272915 kcal Electronic energy + Delta-G solvation = -28503.387347 eV Core-core repulsion = 24426.425306 eV Total energy + Delta-G solvation = -4076.962041 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.62554 -41.37837 -40.71985 -39.37953 -38.12269 -37.68194 -35.00410 -33.46649 -32.07416 -31.70233 -31.01568 -29.19676 -28.20063 -26.95343 -26.78791 -24.51184 -23.48743 -22.92560 -22.08916 -21.50887 -21.16821 -20.24085 -19.50256 -19.15686 -18.04173 -17.73898 -17.00239 -16.95268 -16.80122 -16.56937 -16.23746 -16.21485 -15.81013 -15.38595 -15.34804 -15.12226 -14.76957 -14.44536 -14.36466 -14.27856 -14.04950 -13.95130 -13.63379 -13.55195 -13.54521 -13.31191 -13.05062 -12.96251 -12.60155 -12.41617 -12.19924 -12.09060 -12.00493 -11.87787 -11.69565 -11.34923 -11.10531 -10.65957 -10.24229 -9.99963 -9.83439 -9.21672 -9.21009 -4.92059 0.27666 0.34571 0.44829 1.22470 1.51281 1.71848 1.89194 1.96359 2.17407 2.21725 2.24791 2.80375 3.33887 3.44907 3.46828 3.56731 3.69674 3.70506 3.79405 3.86300 3.93106 4.12615 4.19108 4.19952 4.24204 4.25632 4.32796 4.41269 4.46274 4.51027 4.60967 4.66292 4.69229 4.71351 4.75426 4.80482 4.88869 4.91296 4.97319 5.04009 5.11832 5.16429 5.30780 5.34201 5.43979 5.44810 5.57196 5.62533 5.82214 5.84210 6.28839 6.42637 6.45662 6.67627 7.04086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.072 4.072 4 C 0.587 3.413 5 O -0.563 6.563 6 N -0.708 5.708 7 C 0.120 3.880 8 H 0.102 0.898 9 C -0.118 4.118 10 C -0.103 4.103 11 H 0.101 0.899 12 C 0.069 3.931 13 O -0.332 6.332 14 C 0.111 3.889 15 C -0.175 4.175 16 C -0.087 4.087 17 C -0.169 4.169 18 C -0.088 4.088 19 C -0.218 4.218 20 C -0.145 4.145 21 N -0.514 5.514 22 C 0.034 3.966 23 C -0.053 4.053 24 O -0.553 6.553 25 Si 0.802 3.198 26 C -0.207 4.207 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.409 0.591 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.427 0.573 43 H 0.116 0.884 44 H 0.399 0.601 45 H -0.287 1.287 46 H -0.294 1.294 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -1.492 2.844 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.185 4.185 4 C 0.376 3.624 5 O -0.442 6.442 6 N -0.359 5.359 7 C 0.015 3.985 8 H 0.120 0.880 9 C -0.156 4.156 10 C -0.122 4.122 11 H 0.119 0.881 12 C -0.006 4.006 13 O -0.246 6.246 14 C 0.066 3.934 15 C -0.193 4.193 16 C -0.105 4.105 17 C -0.187 4.187 18 C -0.106 4.106 19 C -0.236 4.236 20 C -0.184 4.184 21 N -0.111 5.111 22 C -0.085 4.085 23 C -0.163 4.163 24 O -0.361 6.361 25 Si 0.706 3.294 26 C -0.231 4.231 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.245 0.755 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.267 0.733 43 H 0.134 0.866 44 H 0.250 0.750 45 H -0.214 1.214 46 H -0.222 1.222 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.744 -1.682 1.975 5.407 hybrid contribution 0.877 0.863 -0.472 1.318 sum 5.621 -0.819 1.502 5.876 Atomic orbital electron populations 1.20342 0.89212 1.03104 1.02151 1.20188 0.96315 0.91361 1.01605 1.20151 0.84536 0.93115 1.20688 1.17267 0.85697 0.83814 0.75604 1.90820 1.17648 1.83790 1.51925 1.45744 1.09520 1.05672 1.74919 1.22490 0.99970 0.78583 0.97414 0.87999 1.23302 1.00014 0.93641 0.98617 1.22299 0.98069 0.94857 0.96945 0.88092 1.22963 0.97060 0.89899 0.90664 1.86057 1.34418 1.49418 1.54711 1.19257 0.88413 0.92245 0.93476 1.20710 1.01190 0.98176 0.99245 1.21299 0.92741 0.98092 0.98373 1.21432 0.96575 1.00473 1.00201 1.21324 1.00227 0.94281 0.94783 1.21505 0.91806 1.04891 1.05435 1.23560 1.02181 0.95744 0.96935 1.41807 1.06756 1.06769 1.55762 1.21310 0.97093 0.83363 1.06784 1.25014 0.91590 1.09111 0.90572 1.86474 1.42612 1.91201 1.15849 0.92980 0.79596 0.71105 0.85728 1.20847 0.90778 0.99556 1.11894 0.91818 0.89800 0.92026 0.75486 0.87134 0.88949 0.90844 0.90508 0.85216 0.83613 0.84079 0.83757 0.83910 0.92142 0.88997 0.73326 0.86639 0.75024 1.21409 1.22157 0.81377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 9.83 71.23 0.70 0.27 16 2 C -0.09 -0.39 6.21 -19.56 -0.12 -0.51 16 3 C -0.07 -0.26 7.06 40.35 0.28 0.03 16 4 C 0.59 3.49 7.79 86.45 0.67 4.16 16 5 O -0.56 -7.76 14.40 -4.35 -0.06 -7.82 16 6 N -0.71 1.05 5.35 -444.00 -2.38 -1.33 16 7 C 0.12 -0.15 4.24 45.52 0.19 0.05 16 8 H 0.10 0.34 7.47 -2.38 -0.02 0.32 16 9 C -0.12 0.81 7.39 31.12 0.23 1.04 16 10 C -0.10 0.33 4.01 -10.27 -0.04 0.29 16 11 H 0.10 -0.14 8.14 -2.38 -0.02 -0.16 16 12 C 0.07 -0.16 4.58 71.98 0.33 0.17 16 13 O -0.33 -1.64 10.14 -92.42 -0.94 -2.57 16 14 C 0.11 0.58 6.69 22.50 0.15 0.73 16 15 C -0.17 -0.88 9.99 22.37 0.22 -0.65 16 16 C -0.09 -0.19 10.04 22.26 0.22 0.03 16 17 C -0.17 -0.18 10.04 22.28 0.22 0.04 16 18 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 19 C -0.22 -0.41 9.04 22.36 0.20 -0.21 16 20 C -0.15 0.13 7.43 31.12 0.23 0.36 16 21 N -0.51 1.21 5.99 -171.93 -1.03 0.18 16 22 C 0.03 -0.07 6.46 41.34 0.27 0.19 16 23 C -0.05 0.25 3.08 71.24 0.22 0.47 16 24 O -0.55 2.63 12.88 -148.98 -1.92 0.71 16 25 Si 0.80 -4.12 30.56 68.60 2.10 -2.02 16 26 C -0.21 0.05 9.27 22.01 0.20 0.25 16 27 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.55 6.48 -2.39 -0.02 0.54 16 30 H 0.41 -3.20 7.86 -92.71 -0.73 -3.93 16 31 H 0.11 -1.21 8.08 -2.39 -0.02 -1.23 16 32 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.07 -0.33 7.36 -2.39 -0.02 -0.35 16 34 H 0.08 -0.35 7.66 -2.39 -0.02 -0.37 16 35 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 37 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 38 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 39 H 0.14 -0.39 6.30 -2.91 -0.02 -0.41 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.09 -0.21 7.90 -2.39 -0.02 -0.23 16 42 H 0.43 -3.30 8.19 -92.71 -0.76 -4.06 16 43 H 0.12 -0.56 7.96 -2.39 -0.02 -0.58 16 44 H 0.40 -4.72 8.70 -74.06 -0.64 -5.36 16 45 H -0.29 -0.24 7.11 99.48 0.71 0.47 16 46 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 47 H 0.17 -0.81 6.19 -2.91 -0.02 -0.83 16 Total: 0.00 -22.25 389.80 -0.88 -23.14 By element: Atomic # 1 Polarization: -16.08 SS G_CDS: -1.07 Total: -17.15 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 4.42 Total: 6.87 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -3.41 Total: -1.15 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -2.92 Total: -9.68 kcal Atomic # 14 Polarization: -4.12 SS G_CDS: 2.10 Total: -2.02 kcal Total: -22.25 -0.88 -23.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_13940406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -22.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds