Wall clock time and date at job start Sun Mar 7 2021 05:01:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42902 * 1
3 3 Si 1.86304 * 109.46875 * 2 1
4 4 C 1.50697 * 109.46958 * 240.00383 * 2 1 3
5 5 C 1.38708 * 120.02761 * 284.99588 * 4 2 1
6 6 O 1.35900 * 120.05751 * 0.02562 * 5 4 2
7 7 C 1.42894 * 117.00370 * 180.02562 * 6 5 4
8 8 C 1.50699 * 109.47583 * 179.97438 * 7 6 5
9 9 O 1.21283 * 119.99341 * 359.97438 * 8 7 6
10 10 N 1.34776 * 120.00405 * 180.02562 * 8 7 6
11 11 C 1.46499 * 119.99941 * 180.02562 * 10 8 7
12 12 H 1.09000 * 112.85388 * 23.79874 * 11 10 8
13 13 C 1.53786 * 113.61357 * 154.99692 * 11 10 8
14 14 C 1.53780 * 87.08000 * 139.97941 * 13 11 10
15 15 H 1.09001 * 113.61568 * 89.19819 * 14 13 11
16 16 C 1.53002 * 113.61215 * 220.02061 * 14 13 11
17 17 O 1.42904 * 109.46919 * 185.00001 * 16 14 13
18 18 C 1.35897 * 116.99895 * 180.02562 * 17 16 14
19 19 C 1.38733 * 120.05580 * 359.71921 * 18 17 16
20 20 C 1.38152 * 119.94065 * 179.70342 * 19 18 17
21 21 C 1.38262 * 120.05492 * 0.59907 * 20 19 18
22 22 C 1.38262 * 120.11330 * 359.67812 * 21 20 19
23 23 C 1.38146 * 120.05603 * 0.02562 * 22 21 20
24 24 C 1.53784 * 113.60979 * 252.49337 * 11 10 8
25 25 C 1.38759 * 119.89010 * 180.02562 * 5 4 2
26 26 C 1.38119 * 119.94381 * 0.02562 * 25 5 4
27 27 C 1.38295 * 120.05704 * 359.97438 * 26 25 5
28 28 C 1.38171 * 120.03194 * 104.99815 * 4 2 1
29 29 H 0.96696 * 114.00159 * 299.99987 * 1 2 3
30 30 H 1.08995 * 109.47335 * 119.99982 * 2 1 3
31 31 H 1.48500 * 109.99981 * 178.68127 * 3 2 1
32 32 H 1.48499 * 110.00192 * 300.00223 * 3 2 1
33 33 H 1.09001 * 109.47181 * 300.00095 * 7 6 5
34 34 H 1.08998 * 109.47333 * 59.99666 * 7 6 5
35 35 H 0.97002 * 119.99581 * 359.97438 * 10 8 7
36 36 H 1.09000 * 113.61172 * 254.52470 * 13 11 10
37 37 H 1.09000 * 113.61382 * 25.34489 * 13 11 10
38 38 H 1.08995 * 109.47015 * 304.99688 * 16 14 13
39 39 H 1.08994 * 109.47015 * 65.00168 * 16 14 13
40 40 H 1.07997 * 120.02697 * 0.02562 * 19 18 17
41 41 H 1.07995 * 119.96564 * 180.32099 * 20 19 18
42 42 H 1.08000 * 119.93864 * 179.70101 * 21 20 19
43 43 H 1.08005 * 119.97262 * 179.97438 * 22 21 20
44 44 H 1.08002 * 120.02581 * 179.97438 * 23 22 21
45 45 H 1.08996 * 113.61765 * 334.56414 * 24 11 10
46 46 H 1.08996 * 113.61343 * 105.47750 * 24 11 10
47 47 H 1.08001 * 120.03003 * 179.97438 * 25 5 4
48 48 H 1.07997 * 119.97310 * 179.97438 * 26 25 5
49 49 H 1.07995 * 119.94657 * 179.74935 * 27 26 25
50 50 H 1.08005 * 119.97011 * 359.97438 * 28 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9313 -0.7103 -1.2305
5 6 1.8697 -2.0939 -1.3070
6 8 1.3560 -2.8106 -0.2730
7 6 1.3244 -4.2316 -0.4208
8 6 0.7270 -4.8522 0.8157
9 8 0.3645 -4.1471 1.7335
10 7 0.5966 -6.1909 0.9022
11 6 0.0154 -6.7941 2.1040
12 1 -0.6294 -6.1076 2.6528
13 6 -0.6214 -8.1717 1.8555
14 6 -0.0214 -8.6047 3.2036
15 1 -0.6763 -8.4150 4.0541
16 6 0.5438 -10.0265 3.1945
17 8 0.9699 -10.3782 4.5124
18 6 1.5012 -11.6179 4.6788
19 6 1.6048 -12.4803 3.5971
20 6 2.1510 -13.7378 3.7676
21 6 2.5826 -14.1415 5.0176
22 6 2.4751 -13.2860 6.0984
23 6 1.9353 -12.0253 5.9318
24 6 1.0442 -7.5168 2.9896
25 6 2.3335 -2.7451 -2.4412
26 6 2.8557 -2.0145 -3.4906
27 6 2.9160 -0.6351 -3.4119
28 6 2.4537 0.0160 -2.2834
29 1 -0.3933 0.4417 0.7650
30 1 1.7924 -0.5138 0.8899
31 1 3.5346 1.7704 0.0321
32 1 1.5614 2.4680 -1.2084
33 1 0.7183 -4.4932 -1.2882
34 1 2.3388 -4.6050 -0.5605
35 1 0.8869 -6.7548 0.1682
36 1 -1.7112 -8.1540 1.8482
37 1 -0.2008 -8.6991 0.9993
38 1 -0.2277 -10.7220 2.8643
39 1 1.3930 -10.0754 2.5129
40 1 1.2637 -12.1670 2.6215
41 1 2.2366 -14.4075 2.9248
42 1 3.0048 -15.1267 5.1498
43 1 2.8126 -13.6039 7.0738
44 1 1.8512 -11.3575 6.7765
45 1 1.9211 -7.8658 2.4443
46 1 1.2989 -6.9705 3.8977
47 1 2.2870 -3.8223 -2.5030
48 1 3.2172 -2.5208 -4.3733
49 1 3.3284 -0.0658 -4.2318
50 1 2.5015 1.0934 -2.2245
There are 68 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 68
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16536076_2989392.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:01:25
Heat of formation + Delta-G solvation = -50.376667 kcal
Electronic energy + Delta-G solvation = -31578.749682 eV
Core-core repulsion = 27118.566191 eV
Total energy + Delta-G solvation = -4460.183492 eV
No. of doubly occupied orbitals = 68
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 370.166 amu
Computer time = 1.46 seconds
Orbital eigenvalues (eV)
-41.76113 -41.32067 -40.80696 -39.61230 -38.49355 -38.04651 -37.50772 -34.83914
-32.97773 -32.03520 -31.47998 -31.05552 -29.88025 -28.59982 -26.76208 -26.70130
-24.66664 -23.70065 -23.28733 -22.62152 -22.44984 -21.70509 -20.66850 -19.43029
-19.19935 -18.44752 -18.29207 -17.75035 -17.44413 -17.21513 -16.95415 -16.90024
-16.84031 -16.43645 -16.12134 -15.75860 -15.55610 -15.48981 -15.26257 -15.06784
-14.82604 -14.39000 -14.29067 -14.12916 -14.09285 -13.80961 -13.63705 -13.49272
-13.30028 -13.06041 -13.00636 -12.75413 -12.57995 -12.40003 -12.22415 -12.05448
-12.03175 -11.85220 -11.82710 -11.66288 -11.31262 -11.00112 -10.27990 -10.17036
-10.11954 -9.97402 -9.34328 -9.18533 -4.98222 0.07511 0.27080 0.37107
0.47399 1.26302 1.38064 1.42946 1.59739 1.88506 2.17389 2.52842
2.56861 2.82906 3.36715 3.42315 3.47438 3.52778 3.67165 3.72422
3.75664 3.84397 3.89027 3.92988 3.95953 4.02394 4.05548 4.14785
4.21402 4.22555 4.25887 4.28710 4.36148 4.39261 4.48759 4.52693
4.53900 4.66498 4.69417 4.73015 4.79267 4.84089 4.95175 5.01268
5.06537 5.14670 5.16668 5.22293 5.33411 5.36088 5.46485 5.48150
5.59700 5.60562 5.84822 6.18375 6.42343 6.45975 6.84859 7.08740
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.563 6.563
2 C -0.079 4.079
3 Si 0.780 3.220
4 C -0.137 4.137
5 C 0.133 3.867
6 O -0.308 6.308
7 C 0.034 3.966
8 C 0.514 3.486
9 O -0.569 6.569
10 N -0.698 5.698
11 C 0.118 3.882
12 H 0.094 0.906
13 C -0.116 4.116
14 C -0.105 4.105
15 H 0.097 0.903
16 C 0.069 3.931
17 O -0.333 6.333
18 C 0.112 3.888
19 C -0.217 4.217
20 C -0.088 4.088
21 C -0.169 4.169
22 C -0.088 4.088
23 C -0.176 4.176
24 C -0.145 4.145
25 C -0.207 4.207
26 C -0.072 4.072
27 C -0.158 4.158
28 C -0.105 4.105
29 H 0.396 0.604
30 H 0.064 0.936
31 H -0.286 1.286
32 H -0.281 1.281
33 H 0.122 0.878
34 H 0.124 0.876
35 H 0.422 0.578
36 H 0.089 0.911
37 H 0.117 0.883
38 H 0.077 0.923
39 H 0.077 0.923
40 H 0.145 0.855
41 H 0.145 0.855
42 H 0.141 0.859
43 H 0.145 0.855
44 H 0.129 0.871
45 H 0.098 0.902
46 H 0.056 0.944
47 H 0.165 0.835
48 H 0.162 0.838
49 H 0.148 0.852
50 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.492 -5.590 -4.280 7.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.372 6.372
2 C -0.187 4.187
3 Si 0.684 3.316
4 C -0.138 4.138
5 C 0.087 3.913
6 O -0.221 6.221
7 C -0.044 4.044
8 C 0.300 3.700
9 O -0.447 6.447
10 N -0.352 5.352
11 C 0.014 3.986
12 H 0.112 0.888
13 C -0.154 4.154
14 C -0.124 4.124
15 H 0.115 0.885
16 C -0.006 4.006
17 O -0.247 6.247
18 C 0.067 3.933
19 C -0.235 4.235
20 C -0.106 4.106
21 C -0.187 4.187
22 C -0.106 4.106
23 C -0.194 4.194
24 C -0.183 4.183
25 C -0.226 4.226
26 C -0.090 4.090
27 C -0.176 4.176
28 C -0.122 4.122
29 H 0.246 0.754
30 H 0.082 0.918
31 H -0.213 1.213
32 H -0.208 1.208
33 H 0.140 0.860
34 H 0.142 0.858
35 H 0.260 0.740
36 H 0.108 0.892
37 H 0.135 0.865
38 H 0.095 0.905
39 H 0.095 0.905
40 H 0.163 0.837
41 H 0.163 0.837
42 H 0.159 0.841
43 H 0.163 0.837
44 H 0.147 0.853
45 H 0.117 0.883
46 H 0.075 0.925
47 H 0.182 0.818
48 H 0.180 0.820
49 H 0.166 0.834
50 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 1.671 -4.589 -4.268 6.486
hybrid contribution 0.164 -0.758 -0.379 0.863
sum 1.835 -5.347 -4.648 7.318
Atomic orbital electron populations
1.86439 1.17656 1.82568 1.50552 1.24852 0.85687 1.11566 0.96640
0.94153 0.77453 0.75161 0.84792 1.19054 1.05721 0.91495 0.97532
1.18990 0.93853 0.90759 0.87685 1.86164 1.77788 1.18886 1.39239
1.22771 1.04612 0.79644 0.97399 1.20505 0.78206 0.83226 0.88060
1.90760 1.50080 1.62576 1.41323 1.45648 1.63236 1.05379 1.20901
1.22466 0.95988 0.93839 0.86355 0.88764 1.23306 1.02002 0.93142
0.96901 1.22304 0.98451 0.91923 0.99731 0.88486 1.22979 0.99501
0.96179 0.81936 1.86059 1.75684 1.29649 1.33349 1.19248 0.94578
0.84653 0.94839 1.21514 1.07079 0.95993 0.98941 1.21328 0.95602
0.95437 0.98229 1.21427 1.03096 1.01182 0.93021 1.21288 0.96620
0.92408 1.00241 1.20708 1.04645 0.98307 0.95759 1.23572 0.97992
0.96802 0.99980 1.21685 1.04986 1.02183 0.93711 1.21428 0.95405
0.93581 0.98593 1.21376 1.02292 0.95699 0.98230 1.21017 0.98421
0.99318 0.93474 0.75351 0.91796 1.21291 1.20784 0.86002 0.85809
0.73956 0.89219 0.86482 0.90529 0.90478 0.83739 0.83720 0.84135
0.83713 0.85310 0.88317 0.92468 0.81786 0.82039 0.83396 0.85791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 -4.99 12.86 -148.98 -1.92 -6.91 16
2 C -0.08 -0.62 2.37 71.23 0.17 -0.45 16
3 Si 0.78 2.03 30.20 68.60 2.07 4.10 16
4 C -0.14 -1.37 5.30 -19.77 -0.10 -1.48 16
5 C 0.13 1.04 6.66 22.51 0.15 1.19 16
6 O -0.31 -2.81 9.00 -73.39 -0.66 -3.47 16
7 C 0.03 -0.04 5.22 71.24 0.37 0.33 16
8 C 0.51 1.90 7.91 87.66 0.69 2.60 16
9 O -0.57 -8.81 16.10 16.00 0.26 -8.55 16
10 N -0.70 3.05 5.35 -440.03 -2.36 0.70 16
11 C 0.12 -0.28 4.24 45.52 0.19 -0.08 16
12 H 0.09 0.33 7.47 -2.39 -0.02 0.31 16
13 C -0.12 0.94 7.39 31.12 0.23 1.17 16
14 C -0.11 0.42 4.01 -10.26 -0.04 0.38 16
15 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16
16 C 0.07 -0.23 4.58 71.98 0.33 0.10 16
17 O -0.33 -1.43 10.14 -92.39 -0.94 -2.36 16
18 C 0.11 0.51 6.69 22.51 0.15 0.66 16
19 C -0.22 -0.23 9.04 22.37 0.20 -0.02 16
20 C -0.09 0.00 10.04 22.25 0.22 0.22 16
21 C -0.17 -0.10 10.04 22.28 0.22 0.12 16
22 C -0.09 -0.16 10.04 22.25 0.22 0.06 16
23 C -0.18 -0.81 9.99 22.37 0.22 -0.58 16
24 C -0.14 0.31 7.43 31.12 0.23 0.54 16
25 C -0.21 -0.18 9.04 22.37 0.20 0.02 16
26 C -0.07 0.02 10.04 22.25 0.22 0.24 16
27 C -0.16 -0.46 10.04 22.28 0.22 -0.24 16
28 C -0.10 -0.80 8.66 22.25 0.19 -0.60 16
29 H 0.40 -0.42 8.74 -74.06 -0.65 -1.06 16
30 H 0.06 0.55 7.83 -2.39 -0.02 0.54 16
31 H -0.29 -2.10 7.11 99.48 0.71 -1.40 16
32 H -0.28 -2.04 6.75 99.48 0.67 -1.37 16
33 H 0.12 -0.87 7.66 -2.39 -0.02 -0.89 16
34 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16
35 H 0.42 -5.30 8.73 -92.71 -0.81 -6.11 16
36 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16
37 H 0.12 -1.52 8.08 -2.39 -0.02 -1.54 16
38 H 0.08 -0.43 7.65 -2.39 -0.02 -0.45 16
39 H 0.08 -0.47 7.37 -2.39 -0.02 -0.49 16
40 H 0.14 -0.55 6.30 -2.91 -0.02 -0.57 16
41 H 0.15 -0.68 8.06 -2.91 -0.02 -0.71 16
42 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16
43 H 0.15 -0.35 8.06 -2.91 -0.02 -0.38 16
44 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16
45 H 0.10 -0.44 7.90 -2.39 -0.02 -0.46 16
46 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16
47 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16
48 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16
49 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16
50 H 0.12 0.85 4.90 -2.91 -0.01 0.83 16
Total: 0.00 -30.81 415.58 0.30 -30.52
By element:
Atomic # 1 Polarization: -17.72 SS G_CDS: -0.48 Total: -18.19 kcal
Atomic # 6 Polarization: -0.14 SS G_CDS: 4.31 Total: 4.17 kcal
Atomic # 7 Polarization: 3.05 SS G_CDS: -2.36 Total: 0.70 kcal
Atomic # 8 Polarization: -18.04 SS G_CDS: -3.25 Total: -21.29 kcal
Atomic # 14 Polarization: 2.03 SS G_CDS: 2.07 Total: 4.10 kcal
Total: -30.81 0.30 -30.52 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16536076_2989392.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.859 kcal
(2) G-P(sol) polarization free energy of solvation -30.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.377 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.47 seconds