Wall clock time and date at job start Sun Mar 7 2021 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86306 * 109.46809 * 2 1 4 4 C 1.50696 * 109.47724 * 239.99703 * 2 1 3 5 5 C 1.38265 * 119.94370 * 300.00279 * 4 2 1 6 6 C 1.38145 * 120.05726 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94209 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05580 * 180.02562 * 7 6 5 9 9 C 1.42902 * 117.00092 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46833 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00755 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99526 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99843 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.90816 * 23.74366 * 13 12 10 15 15 C 1.53784 * 113.61491 * 154.99806 * 13 12 10 16 16 C 1.53787 * 87.07923 * 139.97939 * 15 13 12 17 17 H 1.08998 * 113.61103 * 89.12089 * 16 15 13 18 18 C 1.53003 * 113.61385 * 220.01697 * 16 15 13 19 19 O 1.42898 * 109.46777 * 185.00217 * 18 16 15 20 20 C 1.35905 * 116.99222 * 180.02562 * 19 18 16 21 21 C 1.38726 * 120.05905 * 359.72691 * 20 19 18 22 22 C 1.38146 * 119.94125 * 179.70341 * 21 20 19 23 23 C 1.38269 * 120.05576 * 0.59221 * 22 21 20 24 24 C 1.38267 * 120.11198 * 359.68252 * 23 22 21 25 25 C 1.38140 * 120.05428 * 0.02562 * 24 23 22 26 26 C 1.53778 * 87.08035 * 334.56830 * 16 15 13 27 27 C 1.38733 * 119.89052 * 0.28199 * 7 6 5 28 28 C 1.38151 * 119.94152 * 359.46258 * 27 7 6 29 29 H 0.96695 * 113.99906 * 60.00765 * 1 2 3 30 30 H 1.09007 * 109.46660 * 119.99215 * 2 1 3 31 31 H 1.48500 * 109.99747 * 59.99586 * 3 2 1 32 32 H 1.48500 * 109.99838 * 181.31495 * 3 2 1 33 33 H 1.08006 * 119.97143 * 0.02562 * 5 4 2 34 34 H 1.08003 * 120.02694 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46903 * 60.00104 * 9 8 7 36 36 H 1.09001 * 109.46461 * 300.00078 * 9 8 7 37 37 H 0.97002 * 120.00010 * 359.97438 * 12 10 9 38 38 H 1.09004 * 113.61451 * 25.43425 * 15 13 12 39 39 H 1.08994 * 113.61477 * 254.52726 * 15 13 12 40 40 H 1.08996 * 109.47095 * 305.00324 * 18 16 15 41 41 H 1.09005 * 109.46621 * 65.00138 * 18 16 15 42 42 H 1.07998 * 120.03140 * 359.97438 * 21 20 19 43 43 H 1.08000 * 119.97349 * 180.31948 * 22 21 20 44 44 H 1.08002 * 119.94314 * 179.70481 * 23 22 21 45 45 H 1.08001 * 119.96825 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.03010 * 180.02562 * 25 24 23 47 47 H 1.08999 * 113.61111 * 139.98327 * 26 16 15 48 48 H 1.08999 * 113.61280 * 270.79710 * 26 16 15 49 49 H 1.07998 * 120.03386 * 179.72155 * 27 7 6 50 50 H 1.07997 * 119.97537 * 180.27848 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 1.5968 -2.0342 -1.4480 6 6 2.0557 -2.6876 -2.5753 7 6 2.8525 -2.0142 -3.4898 8 8 3.3048 -2.6545 -4.5998 9 6 4.1210 -1.8992 -5.4973 10 6 4.5245 -2.7676 -6.6609 11 8 4.1505 -3.9200 -6.7161 12 7 5.3011 -2.2636 -7.6404 13 6 5.6939 -3.1079 -8.7713 14 1 5.0082 -3.9384 -8.9391 15 6 6.0246 -2.3147 -10.0467 16 6 7.1858 -3.2994 -10.2636 17 1 6.9078 -4.1821 -10.8394 18 6 8.4660 -2.6345 -10.7735 19 8 9.4443 -3.6376 -11.0541 20 6 10.6485 -3.2119 -11.5187 21 6 10.8815 -1.8573 -11.7062 22 6 12.1085 -1.4269 -12.1728 23 6 13.0996 -2.3458 -12.4645 24 6 12.8679 -3.6968 -12.2838 25 6 11.6447 -4.1319 -11.8118 26 6 7.1733 -3.5267 -8.7428 27 6 3.1914 -0.6875 -3.2664 28 6 2.7256 -0.0371 -2.1402 29 1 -0.3933 0.4416 -0.7651 30 1 1.7923 -0.5138 0.8901 31 1 1.5612 2.4679 1.2085 32 1 3.5345 1.7704 -0.0320 33 1 0.9753 -2.5576 -0.7364 34 1 1.7943 -3.7217 -2.7446 35 1 5.0129 -1.5543 -4.9743 36 1 3.5592 -1.0398 -5.8633 37 1 5.6000 -1.3418 -7.5965 38 1 6.3494 -1.2923 -9.8531 39 1 5.2510 -2.3764 -10.8121 40 1 8.2475 -2.0755 -11.6833 41 1 8.8501 -1.9548 -10.0128 42 1 10.1059 -1.1395 -11.4834 43 1 12.2922 -0.3720 -12.3140 44 1 14.0566 -2.0075 -12.8337 45 1 13.6439 -4.4125 -12.5120 46 1 11.4643 -5.1873 -11.6705 47 1 7.3272 -4.5669 -8.4556 48 1 7.8133 -2.8367 -8.1929 49 1 3.8153 -0.1624 -3.9745 50 1 2.9853 0.9970 -1.9681 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_2989410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:01:30 Heat of formation + Delta-G solvation = -54.083600 kcal Electronic energy + Delta-G solvation = -30877.516911 eV Core-core repulsion = 26417.172674 eV Total energy + Delta-G solvation = -4460.344237 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.67983 -41.26184 -40.77099 -39.66339 -38.86501 -38.07200 -37.10745 -34.82293 -32.41634 -32.02064 -31.73104 -31.10986 -29.98539 -28.64256 -26.74734 -26.23678 -24.61890 -23.89377 -23.36166 -22.69352 -22.21575 -21.69816 -20.66477 -19.50813 -19.19365 -18.41821 -18.07162 -17.66475 -17.43666 -16.99284 -16.91786 -16.83562 -16.59335 -16.24542 -16.09585 -15.93128 -15.57860 -15.47965 -15.31030 -15.03323 -14.64599 -14.38510 -14.32498 -14.28115 -14.09719 -13.76248 -13.57053 -13.47908 -13.45564 -13.25607 -12.99350 -12.57502 -12.40103 -12.24027 -12.08487 -12.05879 -12.03043 -11.84210 -11.72757 -11.65198 -11.30123 -10.98255 -10.40426 -10.15178 -10.04745 -9.97029 -9.22795 -9.18057 -4.98506 0.27129 0.30404 0.37549 0.47791 1.34711 1.41036 1.48074 1.65028 1.99489 2.18654 2.61610 2.65577 2.83319 3.38553 3.48299 3.53251 3.57208 3.73404 3.74035 3.77365 3.83130 3.89669 3.95485 3.96693 4.03271 4.10266 4.23182 4.26745 4.29559 4.30628 4.37146 4.42472 4.49252 4.50662 4.54378 4.66138 4.68077 4.70765 4.74237 4.80618 4.96612 4.96797 5.02795 5.06968 5.15414 5.18338 5.24960 5.33831 5.46964 5.49578 5.50359 5.60126 5.69581 5.85311 6.26217 6.46117 6.47264 6.80110 7.12148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.075 4.075 3 Si 0.784 3.216 4 C -0.161 4.161 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.120 3.880 8 O -0.321 6.321 9 C 0.036 3.964 10 C 0.512 3.488 11 O -0.576 6.576 12 N -0.697 5.697 13 C 0.118 3.882 14 H 0.093 0.907 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.095 0.905 18 C 0.068 3.932 19 O -0.334 6.334 20 C 0.112 3.888 21 C -0.216 4.216 22 C -0.088 4.088 23 C -0.169 4.169 24 C -0.088 4.088 25 C -0.177 4.177 26 C -0.146 4.146 27 C -0.199 4.199 28 C -0.076 4.076 29 H 0.395 0.605 30 H 0.102 0.898 31 H -0.304 1.304 32 H -0.281 1.281 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.423 0.577 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.128 0.872 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.167 0.833 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 10.105 -4.456 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.184 4.184 3 Si 0.690 3.310 4 C -0.162 4.162 5 C -0.079 4.079 6 C -0.186 4.186 7 C 0.075 3.925 8 O -0.235 6.235 9 C -0.042 4.042 10 C 0.298 3.702 11 O -0.455 6.455 12 N -0.351 5.351 13 C 0.013 3.987 14 H 0.111 0.889 15 C -0.152 4.152 16 C -0.126 4.126 17 H 0.114 0.886 18 C -0.006 4.006 19 O -0.248 6.248 20 C 0.067 3.933 21 C -0.235 4.235 22 C -0.106 4.106 23 C -0.187 4.187 24 C -0.106 4.106 25 C -0.195 4.195 26 C -0.185 4.185 27 C -0.217 4.217 28 C -0.093 4.093 29 H 0.245 0.755 30 H 0.119 0.881 31 H -0.232 1.232 32 H -0.208 1.208 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.262 0.738 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.146 0.854 47 H 0.073 0.927 48 H 0.118 0.882 49 H 0.184 0.816 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.792 9.170 -3.558 10.225 hybrid contribution 0.196 -0.716 0.355 0.822 sum 2.988 8.454 -3.203 9.522 Atomic orbital electron populations 1.86463 1.17512 1.82236 1.50489 1.25205 0.85147 1.11124 0.96928 0.93750 0.77708 0.74815 0.84744 1.20363 1.02079 0.95269 0.98458 1.20892 0.97207 0.94096 0.95728 1.20617 1.01625 1.01227 0.95118 1.19213 0.94659 0.92070 0.86539 1.86133 1.65170 1.40442 1.31724 1.22776 0.97734 0.94317 0.89323 1.20648 0.77971 0.87544 0.84019 1.90768 1.55850 1.20415 1.78418 1.45644 1.51210 1.16622 1.21596 1.22443 0.95327 0.94920 0.85978 0.88879 1.23302 0.96671 0.99401 0.95824 1.22313 0.93686 1.00439 0.96114 0.88640 1.22988 0.86521 0.89999 1.01101 1.86062 1.21433 1.37536 1.79787 1.19247 0.85677 0.93346 0.95031 1.21514 1.00304 0.94235 1.07414 1.21335 0.92321 1.00969 0.95944 1.21431 1.00781 0.93221 1.03310 1.21282 0.96024 0.96799 0.96471 1.20709 0.93387 0.99716 1.05711 1.23579 0.96598 1.02216 0.96079 1.21512 1.05659 0.93222 1.01313 1.21077 0.95400 1.00074 0.92764 0.75519 0.88066 1.23236 1.20750 0.85037 0.85728 0.85717 0.85143 0.73797 0.86313 0.89191 0.90490 0.90399 0.83640 0.83663 0.84145 0.83769 0.85378 0.92681 0.88233 0.81593 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.25 12.77 -148.98 -1.90 -2.15 16 2 C -0.07 0.05 2.82 71.23 0.20 0.25 16 3 Si 0.78 -2.90 29.78 68.60 2.04 -0.85 16 4 C -0.16 0.01 5.39 -19.85 -0.11 -0.09 16 5 C -0.06 -0.18 9.60 22.25 0.21 0.04 16 6 C -0.17 -0.81 9.99 22.37 0.22 -0.59 16 7 C 0.12 0.35 6.69 22.51 0.15 0.50 16 8 O -0.32 -1.75 9.67 -73.38 -0.71 -2.46 16 9 C 0.04 -0.16 5.22 71.23 0.37 0.21 16 10 C 0.51 0.91 7.91 87.66 0.69 1.60 16 11 O -0.58 -8.29 16.10 16.00 0.26 -8.03 16 12 N -0.70 4.20 5.35 -440.03 -2.36 1.84 16 13 C 0.12 -0.39 4.24 45.52 0.19 -0.20 16 14 H 0.09 0.26 7.47 -2.39 -0.02 0.24 16 15 C -0.11 1.04 7.39 31.12 0.23 1.27 16 16 C -0.11 0.48 4.01 -10.27 -0.04 0.44 16 17 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 18 C 0.07 -0.26 4.58 71.98 0.33 0.07 16 19 O -0.33 -1.34 10.14 -92.49 -0.94 -2.28 16 20 C 0.11 0.48 6.69 22.51 0.15 0.64 16 21 C -0.22 -0.14 9.04 22.36 0.20 0.07 16 22 C -0.09 0.03 10.04 22.26 0.22 0.25 16 23 C -0.17 -0.06 10.04 22.28 0.22 0.16 16 24 C -0.09 -0.15 10.04 22.25 0.22 0.07 16 25 C -0.18 -0.80 9.99 22.37 0.22 -0.57 16 26 C -0.15 0.39 7.43 31.12 0.23 0.62 16 27 C -0.20 0.69 9.04 22.37 0.20 0.89 16 28 C -0.08 0.27 8.66 22.26 0.19 0.46 16 29 H 0.39 -3.07 8.70 -74.06 -0.64 -3.72 16 30 H 0.10 0.11 7.96 -2.38 -0.02 0.09 16 31 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 32 H -0.28 0.00 7.11 99.48 0.71 0.70 16 33 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 34 H 0.12 0.71 8.06 -2.91 -0.02 0.68 16 35 H 0.13 -1.34 7.65 -2.39 -0.02 -1.36 16 36 H 0.13 -1.52 7.67 -2.39 -0.02 -1.54 16 37 H 0.42 -6.16 8.73 -92.71 -0.81 -6.97 16 38 H 0.12 -1.70 8.08 -2.39 -0.02 -1.72 16 39 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 40 H 0.08 -0.48 7.65 -2.39 -0.02 -0.49 16 41 H 0.08 -0.53 7.37 -2.38 -0.02 -0.55 16 42 H 0.15 -0.64 6.30 -2.91 -0.02 -0.66 16 43 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 44 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 45 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 47 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.10 -0.52 7.89 -2.39 -0.02 -0.53 16 49 H 0.17 -1.86 6.30 -2.91 -0.02 -1.88 16 50 H 0.15 -1.35 4.87 -2.91 -0.01 -1.37 16 Total: 0.00 -29.79 416.25 0.29 -29.50 By element: Atomic # 1 Polarization: -21.21 SS G_CDS: -0.44 Total: -21.65 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.33 Total: 6.08 kcal Atomic # 7 Polarization: 4.20 SS G_CDS: -2.36 Total: 1.84 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -3.29 Total: -14.92 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.04 Total: -0.85 kcal Total: -29.79 0.29 -29.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_2989410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.588 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds