Wall clock time and date at job start Sun Mar 7 2021 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47066 * 240.00081 * 2 1 3 5 5 C 1.38272 * 119.94257 * 299.99425 * 4 2 1 6 6 C 1.38144 * 120.05427 * 179.97438 * 5 4 2 7 7 C 1.38734 * 119.94391 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.05312 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99714 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46918 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47197 * 180.02562 * 10 9 8 12 12 O 1.21286 * 119.99830 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99832 * 179.97438 * 13 11 10 15 15 H 1.09004 * 112.84527 * 23.80128 * 14 13 11 16 16 C 1.53778 * 113.61145 * 154.99410 * 14 13 11 17 17 C 1.53787 * 87.08035 * 140.06537 * 16 14 13 18 18 H 1.09004 * 113.61202 * 89.11582 * 17 16 14 19 19 C 1.52992 * 113.61596 * 220.01776 * 17 16 14 20 20 O 1.42900 * 109.47327 * 184.99495 * 19 17 16 21 21 C 1.35898 * 117.00159 * 180.02562 * 20 19 17 22 22 C 1.38725 * 120.05474 * 359.73161 * 21 20 19 23 23 C 1.38150 * 119.94218 * 179.74612 * 22 21 20 24 24 C 1.38271 * 120.05449 * 0.50244 * 23 22 21 25 25 C 1.38268 * 120.10872 * 359.77272 * 24 23 22 26 26 C 1.38134 * 120.05708 * 359.97438 * 25 24 23 27 27 C 1.53778 * 113.68980 * 252.53155 * 14 13 11 28 28 C 1.38731 * 119.88866 * 0.27938 * 7 6 5 29 29 C 1.38150 * 119.94350 * 359.46262 * 28 7 6 30 30 H 0.96700 * 114.00118 * 299.99684 * 1 2 3 31 31 H 1.08999 * 109.47039 * 119.99652 * 2 1 3 32 32 H 1.48505 * 109.99688 * 178.68202 * 3 2 1 33 33 H 1.48498 * 109.99880 * 299.99925 * 3 2 1 34 34 H 1.08000 * 119.97107 * 359.97438 * 5 4 2 35 35 H 1.08003 * 120.02589 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.47211 * 60.00394 * 9 8 7 37 37 H 1.08997 * 109.47310 * 299.99603 * 9 8 7 38 38 H 1.09000 * 109.47563 * 59.99516 * 10 9 8 39 39 H 1.09004 * 109.47428 * 299.99916 * 10 9 8 40 40 H 0.97000 * 120.00109 * 359.97438 * 13 11 10 41 41 H 1.08998 * 113.61879 * 25.52019 * 16 14 13 42 42 H 1.08997 * 113.69304 * 254.62106 * 16 14 13 43 43 H 1.08996 * 109.47544 * 305.00011 * 19 17 16 44 44 H 1.09007 * 109.47088 * 65.00447 * 19 17 16 45 45 H 1.08000 * 120.03424 * 359.97438 * 22 21 20 46 46 H 1.07995 * 119.97642 * 180.23219 * 23 22 21 47 47 H 1.08005 * 119.94097 * 179.74630 * 24 23 22 48 48 H 1.08000 * 119.96627 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.02810 * 179.97438 * 26 25 24 50 50 H 1.08993 * 113.61229 * 105.46247 * 27 14 13 51 51 H 1.09000 * 113.61263 * 334.55897 * 27 14 13 52 52 H 1.08001 * 120.02758 * 179.72473 * 28 7 6 53 53 H 1.07998 * 119.97204 * 180.23416 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5966 -2.0342 -1.4481 6 6 2.0554 -2.6875 -2.5755 7 6 2.8530 -2.0144 -3.4895 8 8 3.3050 -2.6547 -4.5996 9 6 4.1220 -1.8996 -5.4967 10 6 4.5314 -2.7812 -6.6783 11 6 5.3934 -1.9851 -7.6239 12 8 5.6541 -0.8266 -7.3774 13 7 5.8737 -2.5603 -8.7442 14 6 6.7112 -1.7861 -9.6638 15 1 7.2093 -0.9470 -9.1780 16 6 7.6536 -2.6524 -10.5160 17 6 7.3294 -1.7122 -11.6890 18 1 7.9964 -0.8528 -11.7570 19 6 7.1538 -2.4369 -13.0249 20 8 6.9722 -1.4767 -14.0675 21 6 6.8002 -1.9582 -15.3266 22 6 6.8117 -3.3265 -15.5548 23 6 6.6315 -3.8136 -16.8350 24 6 6.4501 -2.9383 -17.8898 25 6 6.4440 -1.5739 -17.6657 26 6 6.6186 -1.0820 -16.3868 27 6 6.0022 -1.4069 -10.9746 28 6 3.1925 -0.6880 -3.2657 29 6 2.7268 -0.0376 -2.1394 30 1 -0.3933 0.4417 0.7651 31 1 1.7923 -0.5138 0.8900 32 1 3.5346 1.7703 0.0321 33 1 1.5614 2.4678 -1.2085 34 1 0.9761 -2.5579 -0.7360 35 1 1.7933 -3.7215 -2.7452 36 1 5.0140 -1.5555 -4.9734 37 1 3.5609 -1.0398 -5.8627 38 1 3.6392 -3.1251 -7.2014 39 1 5.0923 -3.6413 -6.3127 40 1 5.6648 -3.4867 -8.9416 41 1 7.2968 -3.6719 -10.6622 42 1 8.6952 -2.6101 -10.1976 43 1 8.0405 -3.0357 -13.2328 44 1 6.2802 -3.0869 -12.9736 45 1 6.9578 -4.0106 -14.7319 46 1 6.6366 -4.8788 -17.0127 47 1 6.3134 -3.3210 -18.8905 48 1 6.3025 -0.8922 -18.4914 49 1 6.6141 -0.0162 -16.2124 50 1 5.7103 -0.3580 -11.0254 51 1 5.1939 -2.0859 -11.2461 52 1 3.8170 -0.1631 -3.9735 53 1 2.9878 0.9960 -1.9666 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_4549602.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:01:34 Heat of formation + Delta-G solvation = -61.650429 kcal Electronic energy + Delta-G solvation = -32533.271107 eV Core-core repulsion = 27917.061129 eV Total energy + Delta-G solvation = -4616.209978 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.62808 -41.34922 -40.91074 -39.69187 -39.09949 -38.11908 -37.25595 -34.81536 -33.44230 -32.21627 -32.02975 -31.64026 -31.02581 -29.13409 -26.80690 -26.72059 -25.80244 -24.40879 -23.66411 -23.28137 -22.50037 -22.09988 -21.61468 -20.64088 -19.64467 -19.19176 -18.37984 -18.03458 -17.72101 -17.57964 -17.28078 -16.96728 -16.92411 -16.78403 -16.51512 -16.25626 -15.92166 -15.87586 -15.56341 -15.34244 -14.97349 -14.79059 -14.51281 -14.43053 -14.34864 -14.23961 -14.01831 -13.93269 -13.70239 -13.51783 -13.33788 -13.06803 -12.98495 -12.90665 -12.58300 -12.51171 -12.40383 -12.07426 -12.05844 -11.98064 -11.86594 -11.81960 -11.68733 -11.33964 -11.07408 -10.32379 -10.20119 -10.14892 -9.99238 -9.33140 -9.20475 -4.99173 0.09814 0.15500 0.35352 0.45546 1.28711 1.43373 1.59440 1.60978 1.94705 2.13920 2.44909 2.49239 2.81127 3.35707 3.36417 3.46143 3.49027 3.57649 3.69570 3.70753 3.73025 3.80783 3.87225 3.87715 3.92767 3.94733 4.09056 4.19876 4.21034 4.24287 4.26743 4.32336 4.35151 4.42655 4.47098 4.51758 4.55266 4.60036 4.64532 4.67588 4.68790 4.71502 4.76913 4.79684 4.93928 4.98762 5.03984 5.04797 5.10302 5.17981 5.31612 5.34608 5.44878 5.48738 5.57094 5.57973 5.83056 6.17242 6.40951 6.43822 6.92026 7.10167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.069 4.069 3 Si 0.769 3.231 4 C -0.129 4.129 5 C -0.054 4.054 6 C -0.151 4.151 7 C 0.124 3.876 8 O -0.315 6.315 9 C 0.071 3.929 10 C -0.131 4.131 11 C 0.519 3.481 12 O -0.588 6.588 13 N -0.702 5.702 14 C 0.117 3.883 15 H 0.095 0.905 16 C -0.116 4.116 17 C -0.106 4.106 18 H 0.097 0.903 19 C 0.069 3.931 20 O -0.333 6.333 21 C 0.111 3.889 22 C -0.217 4.217 23 C -0.088 4.088 24 C -0.169 4.169 25 C -0.087 4.087 26 C -0.176 4.176 27 C -0.145 4.145 28 C -0.212 4.212 29 C -0.104 4.104 30 H 0.404 0.596 31 H 0.099 0.901 32 H -0.292 1.292 33 H -0.303 1.303 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.421 0.579 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.129 0.871 50 H 0.056 0.944 51 H 0.096 0.904 52 H 0.134 0.866 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -6.115 1.204 6.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.179 4.179 3 Si 0.676 3.324 4 C -0.129 4.129 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.078 3.922 8 O -0.229 6.229 9 C -0.005 4.005 10 C -0.170 4.170 11 C 0.306 3.694 12 O -0.468 6.468 13 N -0.354 5.354 14 C 0.012 3.988 15 H 0.113 0.887 16 C -0.154 4.154 17 C -0.125 4.125 18 H 0.115 0.885 19 C -0.006 4.006 20 O -0.248 6.248 21 C 0.066 3.934 22 C -0.236 4.236 23 C -0.106 4.106 24 C -0.187 4.187 25 C -0.105 4.105 26 C -0.194 4.194 27 C -0.184 4.184 28 C -0.231 4.231 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.116 0.884 32 H -0.219 1.219 33 H -0.231 1.231 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.259 0.741 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.159 0.841 48 H 0.163 0.837 49 H 0.147 0.853 50 H 0.075 0.925 51 H 0.115 0.885 52 H 0.152 0.848 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.707 -5.033 0.437 5.101 hybrid contribution 0.259 -0.219 -0.576 0.668 sum 0.965 -5.251 -0.140 5.341 Atomic orbital electron populations 1.86437 1.17110 1.82323 1.51441 1.24655 0.85890 1.10195 0.97159 0.94619 0.77157 0.75970 0.84605 1.19654 1.00545 0.95503 0.97241 1.21084 0.96491 0.93195 0.96379 1.20801 1.00163 1.01936 0.94044 1.19138 0.94692 0.90941 0.87389 1.85958 1.65220 1.40430 1.31309 1.22468 0.93946 0.94285 0.89760 1.21442 1.02082 0.99485 0.94021 1.20702 0.79654 0.86906 0.82099 1.90744 1.60655 1.19499 1.75917 1.45810 1.51307 1.16523 1.21765 1.22437 0.92481 0.95896 0.88004 0.88667 1.23296 1.00689 0.99214 0.92245 1.22315 0.98552 1.00154 0.91452 0.88507 1.22975 1.02076 0.90843 0.84696 1.86056 1.87008 1.37417 1.14282 1.19254 0.96528 0.92970 0.84628 1.21512 1.08608 0.93829 0.99626 1.21333 0.96269 1.01093 0.91883 1.21436 1.03469 0.93411 1.00358 1.21288 0.96771 0.96371 0.96085 1.20709 1.06983 0.99995 0.91763 1.23562 0.97460 1.02175 0.95211 1.21317 1.06094 0.95086 1.00561 1.20801 0.98292 0.98685 0.94353 0.74514 0.88364 1.21921 1.23146 0.82826 0.82844 0.91830 0.92187 0.85321 0.85036 0.74088 0.86694 0.89246 0.90552 0.90576 0.83792 0.83692 0.84078 0.83668 0.85307 0.92509 0.88507 0.84792 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.29 12.74 -148.98 -1.90 -2.19 16 2 C -0.07 -0.06 2.81 71.24 0.20 0.14 16 3 Si 0.77 0.28 29.78 68.60 2.04 2.32 16 4 C -0.13 -0.88 5.42 -19.85 -0.11 -0.99 16 5 C -0.05 -0.26 9.60 22.26 0.21 -0.05 16 6 C -0.15 -0.79 9.99 22.37 0.22 -0.57 16 7 C 0.12 0.95 6.69 22.51 0.15 1.10 16 8 O -0.32 -1.73 10.14 -92.38 -0.94 -2.67 16 9 C 0.07 0.23 4.03 71.98 0.29 0.52 16 10 C -0.13 0.46 6.07 29.85 0.18 0.64 16 11 C 0.52 0.75 7.83 87.66 0.69 1.44 16 12 O -0.59 -6.76 15.58 -3.05 -0.05 -6.81 16 13 N -0.70 3.17 5.36 -440.03 -2.36 0.82 16 14 C 0.12 -0.28 4.24 45.51 0.19 -0.08 16 15 H 0.10 0.28 7.46 -2.38 -0.02 0.27 16 16 C -0.12 0.89 7.39 31.12 0.23 1.12 16 17 C -0.11 0.36 4.01 -10.27 -0.04 0.32 16 18 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 19 C 0.07 -0.18 4.58 71.98 0.33 0.15 16 20 O -0.33 -1.62 10.14 -92.40 -0.94 -2.56 16 21 C 0.11 0.57 6.69 22.51 0.15 0.72 16 22 C -0.22 -0.35 9.04 22.37 0.20 -0.15 16 23 C -0.09 -0.04 10.04 22.26 0.22 0.18 16 24 C -0.17 -0.16 10.04 22.28 0.22 0.07 16 25 C -0.09 -0.19 10.04 22.25 0.22 0.04 16 26 C -0.18 -0.89 9.99 22.36 0.22 -0.66 16 27 C -0.15 0.24 7.43 31.12 0.23 0.47 16 28 C -0.21 -1.89 9.04 22.37 0.20 -1.69 16 29 C -0.10 -0.96 8.66 22.25 0.19 -0.77 16 30 H 0.40 -4.12 8.74 -74.06 -0.65 -4.77 16 31 H 0.10 -0.39 7.96 -2.39 -0.02 -0.40 16 32 H -0.29 -1.77 7.11 99.48 0.71 -1.06 16 33 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 34 H 0.15 0.10 8.06 -2.91 -0.02 0.07 16 35 H 0.15 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.06 0.31 7.61 -2.39 -0.02 0.29 16 37 H 0.06 0.33 7.63 -2.39 -0.02 0.31 16 38 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.42 -4.87 8.73 -92.71 -0.81 -5.68 16 41 H 0.11 -1.39 8.08 -2.39 -0.02 -1.41 16 42 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.08 -0.37 7.65 -2.39 -0.02 -0.39 16 44 H 0.08 -0.40 7.37 -2.38 -0.02 -0.41 16 45 H 0.14 -0.45 6.30 -2.91 -0.02 -0.47 16 46 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 47 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 48 H 0.15 -0.31 8.06 -2.91 -0.02 -0.34 16 49 H 0.13 0.51 8.06 -2.91 -0.02 0.48 16 50 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 52 H 0.13 1.02 6.30 -2.91 -0.02 1.00 16 53 H 0.12 1.02 4.87 -2.91 -0.01 1.00 16 Total: 0.00 -26.54 437.25 -0.19 -26.73 By element: Atomic # 1 Polarization: -17.12 SS G_CDS: -0.48 Total: -17.60 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.42 Total: 1.95 kcal Atomic # 7 Polarization: 3.17 SS G_CDS: -2.36 Total: 0.82 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -3.82 Total: -14.22 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: 2.04 Total: 2.32 kcal Total: -26.54 -0.19 -26.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_4549602.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.920 kcal (2) G-P(sol) polarization free energy of solvation -26.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds