Wall clock time and date at job start Sun Mar 7 2021 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35980 * 117.00111 * 2 1 4 4 C 1.38682 * 120.00239 * 179.97438 * 3 2 1 5 5 C 1.38143 * 120.00346 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.00214 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.46733 * 104.97922 * 6 5 4 8 8 Si 1.86299 * 109.46999 * 344.98586 * 6 5 4 9 9 C 1.38682 * 120.00050 * 0.02562 * 5 4 3 10 10 O 1.35981 * 120.00219 * 180.02562 * 9 5 4 11 11 C 1.42896 * 116.99834 * 179.97438 * 10 9 5 12 12 C 1.50704 * 109.47006 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99905 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00015 * 180.02562 * 14 12 11 16 16 H 1.09004 * 112.90889 * 336.25053 * 15 14 12 17 17 C 1.53784 * 113.61524 * 107.50411 * 15 14 12 18 18 C 1.53778 * 87.08081 * 139.98080 * 17 15 14 19 19 H 1.09004 * 113.61886 * 89.12045 * 18 17 15 20 20 C 1.53003 * 113.68969 * 220.00869 * 18 17 15 21 21 O 1.42899 * 109.46895 * 272.53319 * 20 18 17 22 22 C 1.35903 * 116.99518 * 179.97438 * 21 20 18 23 23 C 1.38724 * 120.06031 * 359.72975 * 22 21 20 24 24 C 1.38153 * 119.94773 * 179.69808 * 23 22 21 25 25 C 1.38269 * 120.05052 * 0.59911 * 24 23 22 26 26 C 1.38267 * 120.11228 * 359.67314 * 25 24 23 27 27 C 1.38149 * 120.05431 * 0.03002 * 26 25 24 28 28 C 1.53778 * 87.08449 * 334.56700 * 18 17 15 29 29 C 1.38723 * 119.99635 * 0.27063 * 9 5 4 30 30 C 1.38110 * 120.00014 * 359.44645 * 29 9 5 31 31 H 1.09003 * 109.46797 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47414 * 299.99772 * 1 2 3 34 34 H 1.08006 * 119.99474 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47097 * 224.97662 * 6 5 4 36 36 H 0.96705 * 114.00198 * 60.00380 * 7 6 5 37 37 H 1.48502 * 110.00024 * 178.68194 * 8 6 5 38 38 H 1.48505 * 109.99765 * 299.99248 * 8 6 5 39 39 H 1.09003 * 109.47409 * 60.00117 * 11 10 9 40 40 H 1.09000 * 109.47090 * 299.99740 * 11 10 9 41 41 H 0.96998 * 119.99607 * 0.02562 * 14 12 11 42 42 H 1.08993 * 113.61313 * 254.52676 * 17 15 14 43 43 H 1.09000 * 113.61578 * 25.43408 * 17 15 14 44 44 H 1.08994 * 109.47311 * 32.53706 * 20 18 17 45 45 H 1.08999 * 109.47124 * 152.53650 * 20 18 17 46 46 H 1.08000 * 120.03005 * 359.97438 * 23 22 21 47 47 H 1.07993 * 119.97508 * 180.31947 * 24 23 22 48 48 H 1.07999 * 119.94406 * 179.70218 * 25 24 23 49 49 H 1.08000 * 119.97196 * 180.02562 * 26 25 24 50 50 H 1.08002 * 120.02496 * 179.97438 * 27 26 25 51 51 H 1.08998 * 113.61879 * 270.88747 * 28 18 17 52 52 H 1.08999 * 113.61887 * 139.97854 * 28 18 17 53 53 H 1.08002 * 119.99686 * 179.70487 * 29 9 5 54 54 H 1.08004 * 119.99896 * 180.29582 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4312 1.2842 0.0005 5 6 4.0584 2.5150 0.0011 6 6 5.5634 2.5939 0.0011 7 8 6.0207 2.9672 -1.3003 8 14 6.2723 0.9320 0.4553 9 6 3.3032 3.6781 0.0016 10 8 3.9205 4.8897 0.0016 11 6 3.0806 6.0458 0.0016 12 6 3.9348 7.2873 0.0022 13 8 5.1438 7.1916 0.0022 14 7 3.3552 8.5041 0.0018 15 6 4.1856 9.7110 0.0019 16 1 5.1832 9.5397 0.4066 17 6 4.1861 10.4585 -1.3421 18 6 4.1376 11.7619 -0.5275 19 1 5.1219 12.1514 -0.2675 20 6 3.2165 12.8269 -1.1261 21 8 3.9454 13.6084 -2.0748 22 6 3.2683 14.6053 -2.7030 23 6 1.9286 14.8233 -2.4164 24 6 1.2441 15.8414 -3.0518 25 6 1.8902 16.6348 -3.9818 26 6 3.2240 16.4161 -4.2733 27 6 3.9143 15.4032 -3.6361 28 6 3.4826 10.9425 0.5969 29 6 1.9179 3.6055 0.0073 30 6 1.2908 2.3750 0.0008 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.0194 0.3783 0.0005 35 1 5.8882 3.3386 0.7278 36 1 5.6901 3.8242 -1.6026 37 1 7.7560 0.9881 0.4279 38 1 5.8041 0.5324 1.8068 39 1 2.4513 6.0377 0.8916 40 1 2.4514 6.0377 -0.8884 41 1 2.3883 8.5807 0.0015 42 1 5.1074 10.3333 -1.9109 43 1 3.2914 10.2834 -1.9395 44 1 2.3761 12.3426 -1.6233 45 1 2.8447 13.4739 -0.3315 46 1 1.4221 14.2004 -1.6940 47 1 0.2026 16.0147 -2.8253 48 1 1.3522 17.4272 -4.4810 49 1 3.7264 17.0375 -4.9998 50 1 4.9560 15.2324 -3.8645 51 1 2.3955 10.8996 0.5297 52 1 3.8359 11.2079 1.5933 53 1 1.3297 4.5113 0.0125 54 1 0.2123 2.3185 0.0004 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_4974302.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:02:31 Heat of formation + Delta-G solvation = -90.427123 kcal Electronic energy + Delta-G solvation = -35871.365089 eV Core-core repulsion = 30935.225068 eV Total energy + Delta-G solvation = -4936.140021 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.87403 -41.42162 -40.92288 -40.10927 -39.38152 -38.20368 -38.00126 -36.93747 -34.84488 -32.82631 -32.03872 -31.29302 -30.92605 -29.81910 -28.65045 -27.93178 -26.77077 -26.60342 -24.66823 -23.71762 -23.29819 -22.53139 -22.41149 -21.72084 -20.68535 -19.55382 -19.20879 -18.82762 -18.45621 -18.04488 -17.68386 -17.50695 -17.36649 -16.94708 -16.91588 -16.61279 -16.50255 -16.11568 -16.10377 -15.70027 -15.52698 -15.44234 -15.32291 -15.22033 -14.54459 -14.38378 -14.29464 -14.24086 -14.09859 -14.05314 -13.54883 -13.50837 -13.47107 -13.29090 -13.04953 -13.01529 -12.58905 -12.52144 -12.40451 -12.30902 -12.06842 -12.03675 -11.85875 -11.66672 -11.45263 -11.33989 -11.30961 -11.23801 -10.98616 -10.17531 -10.10541 -9.97850 -9.19082 -8.83040 -4.94734 0.05672 0.32478 0.36648 0.46918 1.32300 1.38667 1.43597 1.56869 1.90417 2.16867 2.34820 2.53620 2.58888 2.82442 3.35951 3.44943 3.49048 3.54438 3.71123 3.72718 3.75316 3.84364 3.88522 3.93056 3.95602 4.06290 4.08521 4.12241 4.20153 4.21767 4.24868 4.27102 4.28269 4.35425 4.44929 4.45273 4.48292 4.52992 4.65723 4.67708 4.70196 4.72362 4.78435 4.79764 4.94285 4.96610 5.00293 5.06060 5.11468 5.15912 5.19973 5.32880 5.40537 5.46086 5.48414 5.59291 5.84374 6.12028 6.39948 6.45161 6.45862 6.50117 7.09293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.082 4.082 7 O -0.545 6.545 8 Si 0.811 3.189 9 C 0.089 3.911 10 O -0.317 6.317 11 C 0.037 3.963 12 C 0.512 3.488 13 O -0.573 6.573 14 N -0.698 5.698 15 C 0.119 3.881 16 H 0.092 0.908 17 C -0.144 4.144 18 C -0.107 4.107 19 H 0.095 0.905 20 C 0.069 3.931 21 O -0.334 6.334 22 C 0.112 3.888 23 C -0.216 4.216 24 C -0.088 4.088 25 C -0.169 4.169 26 C -0.088 4.088 27 C -0.176 4.176 28 C -0.115 4.115 29 C -0.159 4.159 30 C -0.161 4.161 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.371 0.629 37 H -0.295 1.295 38 H -0.263 1.263 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.423 0.577 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.128 0.872 51 H 0.118 0.882 52 H 0.088 0.912 53 H 0.168 0.832 54 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 2.410 0.726 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.189 4.189 7 O -0.351 6.351 8 Si 0.712 3.288 9 C 0.044 3.956 10 O -0.231 6.231 11 C -0.040 4.040 12 C 0.299 3.701 13 O -0.452 6.452 14 N -0.351 5.351 15 C 0.014 3.986 16 H 0.111 0.889 17 C -0.183 4.183 18 C -0.126 4.126 19 H 0.113 0.887 20 C -0.006 4.006 21 O -0.248 6.248 22 C 0.067 3.933 23 C -0.235 4.235 24 C -0.106 4.106 25 C -0.187 4.187 26 C -0.106 4.106 27 C -0.195 4.195 28 C -0.153 4.153 29 C -0.177 4.177 30 C -0.180 4.180 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.220 0.780 37 H -0.222 1.222 38 H -0.189 1.189 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.146 0.854 51 H 0.136 0.864 52 H 0.107 0.893 53 H 0.186 0.814 54 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.785 1.115 1.321 10.922 hybrid contribution -0.674 2.023 0.326 2.158 sum -11.459 3.138 1.647 11.995 Atomic orbital electron populations 1.23358 0.76361 1.05629 1.02384 1.86087 1.23415 1.26311 1.88924 1.18980 0.91921 0.85385 0.99174 1.20179 0.92459 0.96760 1.04259 1.19452 0.95981 0.91048 1.05548 1.25520 0.92909 1.12496 0.87970 1.86661 1.74234 1.42217 1.32026 0.92230 0.76231 0.79031 0.81307 1.18805 0.91771 0.84219 1.00790 1.86087 1.35601 1.11971 1.89455 1.22737 0.92615 0.81818 1.06875 1.20608 0.88338 0.85669 0.75500 1.90774 1.16882 1.87406 1.50090 1.45643 1.11266 1.03844 1.74382 1.22435 0.95974 0.82728 0.97491 0.88945 1.23568 1.03104 0.94773 0.96876 1.22308 1.00302 0.92694 0.97254 0.88685 1.22978 0.94681 0.92264 0.90657 1.86061 1.40537 1.43447 1.54767 1.19244 0.91504 0.89134 0.93433 1.21512 0.93582 1.02920 1.05471 1.21334 1.00797 0.93663 0.94773 1.21432 0.95227 1.01796 1.00257 1.21287 0.94783 0.96111 0.98380 1.20710 1.01361 0.98084 0.99335 1.23304 1.02076 0.91630 0.98290 1.21376 0.91993 1.00056 1.04310 1.21426 1.01613 0.90904 1.04024 0.91394 0.86749 0.91505 0.83092 0.92124 0.78016 1.22221 1.18891 0.85814 0.85587 0.73885 0.92598 0.88181 0.90374 0.90551 0.83685 0.83668 0.84124 0.83745 0.85374 0.86351 0.89318 0.81439 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.66 10.50 -93.33 -0.98 -1.64 16 3 C 0.09 0.23 6.69 22.49 0.15 0.38 16 4 C -0.12 -0.53 8.59 22.35 0.19 -0.33 16 5 C -0.12 -0.73 5.27 -19.78 -0.10 -0.84 16 6 C -0.08 -0.69 2.33 71.24 0.17 -0.53 16 7 O -0.55 -5.67 12.65 -148.98 -1.89 -7.55 16 8 Si 0.81 4.58 30.17 68.60 2.07 6.65 16 9 C 0.09 0.30 6.62 22.49 0.15 0.45 16 10 O -0.32 -1.43 8.56 -74.30 -0.64 -2.06 16 11 C 0.04 -0.18 5.22 71.24 0.37 0.20 16 12 C 0.51 0.71 7.91 87.66 0.69 1.40 16 13 O -0.57 -7.80 16.10 16.01 0.26 -7.55 16 14 N -0.70 4.20 5.35 -440.02 -2.36 1.84 16 15 C 0.12 -0.38 4.24 45.52 0.19 -0.19 16 16 H 0.09 0.28 7.47 -2.39 -0.02 0.26 16 17 C -0.14 0.39 7.43 31.12 0.23 0.62 16 18 C -0.11 0.46 4.01 -10.27 -0.04 0.42 16 19 H 0.09 -0.15 8.14 -2.38 -0.02 -0.17 16 20 C 0.07 -0.25 4.58 71.98 0.33 0.08 16 21 O -0.33 -1.38 10.14 -92.46 -0.94 -2.32 16 22 C 0.11 0.49 6.69 22.50 0.15 0.65 16 23 C -0.22 -0.16 9.04 22.37 0.20 0.05 16 24 C -0.09 0.02 10.04 22.26 0.22 0.25 16 25 C -0.17 -0.07 10.04 22.28 0.22 0.16 16 26 C -0.09 -0.15 10.04 22.26 0.22 0.07 16 27 C -0.18 -0.80 9.99 22.37 0.22 -0.58 16 28 C -0.12 1.01 7.39 31.12 0.23 1.24 16 29 C -0.16 0.44 9.03 22.36 0.20 0.64 16 30 C -0.16 0.36 9.03 22.35 0.20 0.56 16 31 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 32 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 34 H 0.15 0.26 5.13 -2.91 -0.01 0.25 16 35 H 0.06 0.67 7.82 -2.39 -0.02 0.66 16 36 H 0.37 2.96 8.60 -74.05 -0.64 2.33 16 37 H -0.29 -3.55 7.11 99.48 0.71 -2.84 16 38 H -0.26 -1.96 7.11 99.48 0.71 -1.25 16 39 H 0.12 -1.36 7.65 -2.39 -0.02 -1.38 16 40 H 0.13 -1.41 7.67 -2.39 -0.02 -1.43 16 41 H 0.42 -6.06 8.73 -92.71 -0.81 -6.87 16 42 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.10 -0.53 7.90 -2.39 -0.02 -0.54 16 44 H 0.08 -0.52 7.36 -2.39 -0.02 -0.54 16 45 H 0.08 -0.45 7.68 -2.39 -0.02 -0.47 16 46 H 0.15 -0.62 6.30 -2.91 -0.02 -0.64 16 47 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 48 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 49 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 50 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 51 H 0.12 -1.65 8.08 -2.39 -0.02 -1.67 16 52 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 53 H 0.17 -1.78 6.29 -2.91 -0.02 -1.80 16 54 H 0.16 -1.31 6.29 -2.91 -0.02 -1.33 16 Total: 0.00 -28.89 444.76 0.40 -28.49 By element: Atomic # 1 Polarization: -21.08 SS G_CDS: -0.46 Total: -21.54 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.32 Total: 5.67 kcal Atomic # 7 Polarization: 4.20 SS G_CDS: -2.36 Total: 1.84 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -4.18 Total: -21.12 kcal Atomic # 14 Polarization: 4.58 SS G_CDS: 2.07 Total: 6.65 kcal Total: -28.89 0.40 -28.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_4974302.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.934 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds