Wall clock time and date at job start Sun Mar 7 2021 05:02:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35900 * 117.00026 * 2 1
4 4 C 1.38608 * 120.02485 * 180.23449 * 3 2 1
5 5 C 1.38655 * 119.88862 * 180.27336 * 4 3 2
6 6 O 1.35899 * 120.03012 * 179.76635 * 5 4 3
7 7 C 1.42908 * 116.99727 * 359.72028 * 6 5 4
8 8 C 1.50698 * 109.46887 * 179.97438 * 7 6 5
9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99538 * 180.02562 * 8 7 6
11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7
12 12 H 1.08998 * 112.85361 * 336.47110 * 11 10 8
13 13 C 1.53778 * 113.61557 * 107.77998 * 11 10 8
14 14 C 1.53785 * 87.08457 * 139.98112 * 13 11 10
15 15 H 1.08997 * 113.61414 * 89.11579 * 14 13 11
16 16 C 1.52995 * 113.61616 * 220.02571 * 14 13 11
17 17 O 1.42910 * 109.46794 * 272.49378 * 16 14 13
18 18 C 1.35896 * 117.00013 * 180.02562 * 17 16 14
19 19 C 1.38733 * 120.05480 * 359.72692 * 18 17 16
20 20 C 1.38153 * 119.94240 * 179.70065 * 19 18 17
21 21 C 1.38265 * 120.05402 * 0.59401 * 20 19 18
22 22 C 1.38267 * 120.10956 * 359.68039 * 21 20 19
23 23 C 1.38145 * 120.05903 * 0.02562 * 22 21 20
24 24 C 1.53786 * 113.61394 * 205.27970 * 11 10 8
25 25 C 1.38754 * 119.94684 * 359.49110 * 5 4 3
26 26 C 1.50697 * 119.97349 * 180.27598 * 25 5 4
27 27 O 1.42899 * 109.46891 * 284.99695 * 26 25 5
28 28 Si 1.86304 * 109.47025 * 165.00007 * 26 25 5
29 29 C 1.38196 * 120.05263 * 0.25339 * 25 5 4
30 30 C 1.38159 * 120.10926 * 0.02562 * 29 25 5
31 31 H 1.08998 * 109.47621 * 180.02562 * 1 2 3
32 32 H 1.09007 * 109.47041 * 300.00398 * 1 2 3
33 33 H 1.08997 * 109.46929 * 59.99699 * 1 2 3
34 34 H 1.08002 * 120.05657 * 0.02562 * 4 3 2
35 35 H 1.09003 * 109.46467 * 60.00372 * 7 6 5
36 36 H 1.08993 * 109.47113 * 300.00637 * 7 6 5
37 37 H 0.97001 * 120.00485 * 0.02562 * 10 8 7
38 38 H 1.08997 * 113.61721 * 254.52733 * 13 11 10
39 39 H 1.09004 * 113.61436 * 25.43627 * 13 11 10
40 40 H 1.09000 * 109.47385 * 32.48954 * 16 14 13
41 41 H 1.09005 * 109.47361 * 152.49686 * 16 14 13
42 42 H 1.07994 * 120.03116 * 359.97438 * 19 18 17
43 43 H 1.07999 * 119.97096 * 180.27760 * 20 19 18
44 44 H 1.07995 * 119.94325 * 179.70173 * 21 20 19
45 45 H 1.08004 * 119.96656 * 180.02562 * 22 21 20
46 46 H 1.07999 * 120.02562 * 179.97438 * 23 22 21
47 47 H 1.08999 * 113.61272 * 334.56869 * 24 11 10
48 48 H 1.08999 * 113.61438 * 105.38707 * 24 11 10
49 49 H 1.08997 * 109.47549 * 44.99657 * 26 25 5
50 50 H 0.96701 * 114.00742 * 299.99975 * 27 26 25
51 51 H 1.48502 * 110.00100 * 58.67806 * 28 26 25
52 52 H 1.48500 * 109.99997 * 179.97438 * 28 26 25
53 53 H 1.07999 * 119.94626 * 179.97438 * 29 25 5
54 54 H 1.08000 * 119.97429 * 179.97438 * 30 29 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 3.4302 1.2840 -0.0049
5 6 4.0567 2.5209 0.0008
6 8 5.4136 2.5959 0.0008
7 6 6.1317 1.3604 0.0010
8 6 7.6125 1.6400 0.0003
9 8 8.0136 2.7846 0.0003
10 7 8.4912 0.6180 -0.0002
11 6 9.9307 0.8898 -0.0069
12 1 10.1742 1.8721 -0.4118
13 6 10.6213 0.5853 1.3329
14 6 11.7899 0.0158 0.5113
15 1 12.5426 0.7593 0.2492
16 6 12.3932 -1.2585 1.1055
17 8 13.4075 -0.9099 2.0499
18 6 14.0483 -1.9334 2.6731
19 6 13.7040 -3.2463 2.3859
20 6 14.3613 -4.2852 3.0162
21 6 15.3529 -4.0172 3.9417
22 6 15.6939 -2.7095 4.2338
23 6 15.0439 -1.6672 3.6018
24 6 10.7700 -0.2497 -0.6087
25 6 3.2972 3.6821 0.0008
26 6 3.9776 5.0268 0.0008
27 8 4.5037 5.2944 1.3022
28 14 2.7441 6.3468 -0.4539
29 6 1.9173 3.6065 0.0003
30 6 1.2906 2.3753 0.0004
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 -0.3633 0.5139 -0.8899
34 1 4.0196 0.3791 -0.0092
35 1 5.8700 0.7881 -0.8891
36 1 5.8699 0.7881 0.8909
37 1 8.1705 -0.2974 -0.0005
38 1 10.8820 1.4774 1.9025
39 1 10.1025 -0.1636 1.9313
40 1 11.6123 -1.8311 1.6059
41 1 12.8303 -1.8596 0.3081
42 1 12.9260 -3.4561 1.6669
43 1 14.0967 -5.3075 2.7896
44 1 15.8622 -4.8306 4.4369
45 1 16.4692 -2.5027 4.9568
46 1 15.3104 -0.6459 3.8307
47 1 10.2917 -1.2269 -0.5411
48 1 11.1494 -0.0323 -1.6071
49 1 4.7900 5.0229 -0.7258
50 1 3.8352 5.3129 2.0006
51 1 1.6153 6.3413 0.5111
52 1 3.4025 7.6779 -0.4569
53 1 1.3278 4.5115 0.0007
54 1 0.2121 2.3187 0.0005
There are 74 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 74
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16536076_4974312.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:02:36
Heat of formation + Delta-G solvation = -86.607559 kcal
Electronic energy + Delta-G solvation = -35944.026289 eV
Core-core repulsion = 31008.051897 eV
Total energy + Delta-G solvation = -4935.974392 eV
No. of doubly occupied orbitals = 74
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 400.181 amu
Computer time = 2.02 seconds
Orbital eigenvalues (eV)
-41.88098 -41.42061 -40.92216 -40.10580 -39.40219 -38.37618 -38.05740 -37.01480
-34.84231 -32.32112 -32.04114 -31.52446 -31.05536 -29.87593 -28.65434 -28.31763
-26.76889 -26.14156 -24.66880 -23.70178 -23.29021 -22.55364 -22.46703 -21.72167
-20.68672 -19.97735 -19.20938 -18.59392 -18.11604 -17.98930 -17.54600 -17.49326
-17.20536 -16.92810 -16.89141 -16.67138 -16.51723 -16.45940 -16.14505 -15.98335
-15.63670 -15.41313 -15.28720 -15.18230 -14.77878 -14.51633 -14.38510 -14.28413
-14.10408 -13.76833 -13.52675 -13.49098 -13.35899 -13.28922 -13.14278 -13.01472
-12.58729 -12.48797 -12.40366 -12.30763 -12.07194 -12.03107 -11.85605 -11.67048
-11.66270 -11.63521 -11.32437 -11.00937 -10.52444 -10.17514 -9.97884 -9.71165
-9.19048 -9.11439 -4.93812 0.19137 0.29756 0.36627 0.46920 1.30921
1.38195 1.42852 1.54960 1.95753 2.16167 2.25451 2.55290 2.59202
2.82430 3.36299 3.46402 3.48551 3.52993 3.71063 3.72110 3.75120
3.79531 3.88543 3.93048 3.95601 4.03329 4.05800 4.16175 4.21778
4.24749 4.28362 4.33923 4.35395 4.39986 4.42475 4.45952 4.48312
4.53177 4.65202 4.65857 4.68653 4.72489 4.78460 4.79097 4.94374
5.00554 5.01381 5.06041 5.16180 5.22602 5.26959 5.32991 5.45020
5.46129 5.49355 5.59159 5.84426 6.12205 6.34947 6.42916 6.45510
6.56250 7.09052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.330 6.330
3 C 0.165 3.835
4 C -0.251 4.251
5 C 0.177 3.823
6 O -0.304 6.304
7 C 0.034 3.966
8 C 0.513 3.487
9 O -0.571 6.571
10 N -0.698 5.698
11 C 0.118 3.882
12 H 0.094 0.906
13 C -0.146 4.146
14 C -0.105 4.105
15 H 0.097 0.903
16 C 0.069 3.931
17 O -0.334 6.334
18 C 0.112 3.888
19 C -0.217 4.217
20 C -0.088 4.088
21 C -0.169 4.169
22 C -0.088 4.088
23 C -0.176 4.176
24 C -0.114 4.114
25 C -0.196 4.196
26 C -0.078 4.078
27 O -0.550 6.550
28 Si 0.782 3.218
29 C -0.041 4.041
30 C -0.238 4.238
31 H 0.117 0.883
32 H 0.066 0.934
33 H 0.071 0.929
34 H 0.154 0.846
35 H 0.127 0.873
36 H 0.119 0.881
37 H 0.422 0.578
38 H 0.054 0.946
39 H 0.098 0.902
40 H 0.077 0.923
41 H 0.078 0.922
42 H 0.145 0.855
43 H 0.146 0.854
44 H 0.141 0.859
45 H 0.145 0.855
46 H 0.128 0.872
47 H 0.117 0.883
48 H 0.091 0.909
49 H 0.097 0.903
50 H 0.381 0.619
51 H -0.262 1.262
52 H -0.308 1.308
53 H 0.156 0.844
54 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.930 -9.299 -2.990 11.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.243 6.243
3 C 0.119 3.881
4 C -0.271 4.271
5 C 0.130 3.870
6 O -0.216 6.216
7 C -0.043 4.043
8 C 0.300 3.700
9 O -0.449 6.449
10 N -0.352 5.352
11 C 0.013 3.987
12 H 0.112 0.888
13 C -0.185 4.185
14 C -0.124 4.124
15 H 0.115 0.885
16 C -0.006 4.006
17 O -0.248 6.248
18 C 0.067 3.933
19 C -0.235 4.235
20 C -0.106 4.106
21 C -0.187 4.187
22 C -0.106 4.106
23 C -0.195 4.195
24 C -0.152 4.152
25 C -0.197 4.197
26 C -0.186 4.186
27 O -0.358 6.358
28 Si 0.685 3.315
29 C -0.059 4.059
30 C -0.256 4.256
31 H 0.135 0.865
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.172 0.828
35 H 0.144 0.856
36 H 0.137 0.863
37 H 0.261 0.739
38 H 0.073 0.927
39 H 0.117 0.883
40 H 0.095 0.905
41 H 0.096 0.904
42 H 0.163 0.837
43 H 0.163 0.837
44 H 0.159 0.841
45 H 0.163 0.837
46 H 0.146 0.854
47 H 0.136 0.864
48 H 0.109 0.891
49 H 0.115 0.885
50 H 0.230 0.770
51 H -0.188 1.188
52 H -0.237 1.237
53 H 0.173 0.827
54 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -5.280 -7.582 -3.066 9.735
hybrid contribution 0.141 -0.489 1.336 1.429
sum -5.139 -8.070 -1.730 9.723
Atomic orbital electron populations
1.23408 0.75992 1.05731 1.02693 1.86055 1.23762 1.26548 1.87921
1.18867 0.91652 0.84973 0.92648 1.20554 0.93410 0.97400 1.15695
1.18590 0.81704 0.93198 0.93478 1.86228 1.15554 1.31709 1.88121
1.22759 0.88399 0.86495 1.06692 1.20541 0.88628 0.85288 0.75580
1.90780 1.80775 1.23399 1.49922 1.45651 1.05596 1.09482 1.74441
1.22464 0.78410 1.00296 0.97520 0.88822 1.23580 0.96450 1.01529
0.96943 1.22304 0.95960 0.96966 0.97176 0.88521 1.22980 0.89192
0.97605 0.90791 1.86061 1.50831 1.32774 1.55149 1.19252 0.93216
0.87379 0.93493 1.21516 1.04904 0.91574 1.05522 1.21333 0.94674
0.99751 0.94802 1.21430 0.99749 0.97250 1.00271 1.21287 0.98670
0.92229 0.98368 1.20706 0.98467 1.00892 0.99413 1.23302 0.94329
0.99166 0.98400 1.19611 0.93542 0.93958 1.12638 1.25169 1.06287
0.99815 0.87302 1.86653 1.38576 1.93077 1.17476 0.94125 0.75443
0.73333 0.88555 1.20944 0.91983 0.98833 0.94093 1.21402 1.01624
0.91234 1.11362 0.86510 0.91514 0.91076 0.82820 0.85580 0.86319
0.73944 0.92667 0.88343 0.90483 0.90421 0.83718 0.83666 0.84090
0.83714 0.85376 0.86428 0.89077 0.88496 0.77030 1.18802 1.23687
0.82717 0.82501
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16
2 O -0.33 -0.13 10.49 -92.42 -0.97 -1.10 16
3 C 0.16 0.24 6.68 22.49 0.15 0.39 16
4 C -0.25 -0.50 8.97 22.46 0.20 -0.30 16
5 C 0.18 1.00 6.66 22.49 0.15 1.15 16
6 O -0.30 -2.64 8.99 -73.37 -0.66 -3.30 16
7 C 0.03 -0.01 5.22 71.24 0.37 0.36 16
8 C 0.51 2.54 7.91 87.66 0.69 3.23 16
9 O -0.57 -9.85 16.10 16.00 0.26 -9.59 16
10 N -0.70 2.20 5.35 -440.04 -2.36 -0.15 16
11 C 0.12 -0.13 4.24 45.52 0.19 0.06 16
12 H 0.09 0.45 7.46 -2.39 -0.02 0.43 16
13 C -0.15 0.10 7.43 31.12 0.23 0.33 16
14 C -0.11 0.31 4.01 -10.26 -0.04 0.27 16
15 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16
16 C 0.07 -0.17 4.58 71.98 0.33 0.16 16
17 O -0.33 -1.73 10.14 -92.38 -0.94 -2.66 16
18 C 0.11 0.60 6.69 22.51 0.15 0.75 16
19 C -0.22 -0.36 9.04 22.37 0.20 -0.15 16
20 C -0.09 -0.05 10.04 22.26 0.22 0.18 16
21 C -0.17 -0.18 10.04 22.28 0.22 0.04 16
22 C -0.09 -0.21 10.04 22.25 0.22 0.01 16
23 C -0.18 -0.94 9.99 22.36 0.22 -0.72 16
24 C -0.11 0.83 7.39 31.13 0.23 1.06 16
25 C -0.20 -0.90 5.27 -19.75 -0.10 -1.00 16
26 C -0.08 -0.51 2.37 71.24 0.17 -0.34 16
27 O -0.55 -5.86 12.88 -148.98 -1.92 -7.77 16
28 Si 0.78 0.79 30.24 68.60 2.07 2.86 16
29 C -0.04 0.00 8.65 22.24 0.19 0.19 16
30 C -0.24 0.25 9.04 22.38 0.20 0.45 16
31 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16
32 H 0.07 -0.55 7.66 -2.38 -0.02 -0.57 16
33 H 0.07 -0.63 7.66 -2.39 -0.02 -0.64 16
34 H 0.15 -0.41 6.30 -2.91 -0.02 -0.43 16
35 H 0.13 -0.87 7.65 -2.39 -0.02 -0.88 16
36 H 0.12 -0.65 7.67 -2.39 -0.02 -0.67 16
37 H 0.42 -4.79 8.73 -92.71 -0.81 -5.60 16
38 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16
39 H 0.10 -0.30 7.90 -2.39 -0.02 -0.31 16
40 H 0.08 -0.40 7.35 -2.39 -0.02 -0.42 16
41 H 0.08 -0.38 7.67 -2.38 -0.02 -0.40 16
42 H 0.15 -0.47 6.30 -2.91 -0.02 -0.49 16
43 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16
44 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16
45 H 0.15 -0.27 8.06 -2.91 -0.02 -0.30 16
46 H 0.13 0.56 8.06 -2.91 -0.02 0.54 16
47 H 0.12 -1.45 8.08 -2.39 -0.02 -1.47 16
48 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16
49 H 0.10 0.94 7.82 -2.39 -0.02 0.92 16
50 H 0.38 1.17 8.70 -74.06 -0.64 0.53 16
51 H -0.26 -0.31 6.68 99.48 0.66 0.36 16
52 H -0.31 -2.93 7.11 99.48 0.71 -2.22 16
53 H 0.16 -0.65 4.85 -2.91 -0.01 -0.67 16
54 H 0.16 -0.98 6.29 -2.91 -0.02 -1.00 16
Total: 0.00 -31.02 444.96 0.31 -30.71
By element:
Atomic # 1 Polarization: -15.63 SS G_CDS: -0.51 Total: -16.14 kcal
Atomic # 6 Polarization: 1.81 SS G_CDS: 5.33 Total: 7.14 kcal
Atomic # 7 Polarization: 2.20 SS G_CDS: -2.36 Total: -0.15 kcal
Atomic # 8 Polarization: -20.20 SS G_CDS: -4.23 Total: -24.43 kcal
Atomic # 14 Polarization: 0.79 SS G_CDS: 2.07 Total: 2.86 kcal
Total: -31.02 0.31 -30.71 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16536076_4974312.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.896 kcal
(2) G-P(sol) polarization free energy of solvation -31.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.02 seconds