Wall clock time and date at job start Sun Mar 7 2021 09:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35533 * 125.67599 * 2 1 4 4 C 1.35455 * 108.87252 * 180.18188 * 3 2 1 5 5 C 1.50694 * 126.07201 * 179.87225 * 4 3 2 6 6 O 1.42900 * 109.47407 * 119.68540 * 5 4 3 7 7 Si 1.86303 * 109.46938 * 359.68796 * 5 4 3 8 8 C 1.39837 * 107.86015 * 359.60503 * 4 3 2 9 9 C 1.37649 * 125.67843 * 179.74886 * 2 1 3 10 10 C 1.46675 * 126.23204 * 359.97438 * 9 2 1 11 11 O 1.21694 * 120.00316 * 354.26703 * 10 9 2 12 12 N 1.34781 * 120.00134 * 174.27134 * 10 9 2 13 13 C 1.46489 * 120.00045 * 185.07683 * 12 10 9 14 14 H 1.08999 * 109.47627 * 35.00179 * 13 12 10 15 15 C 1.53005 * 109.47005 * 154.99733 * 13 12 10 16 16 C 1.53000 * 109.47073 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47348 * 300.00259 * 16 15 13 18 18 H 1.09004 * 109.46917 * 300.00106 * 17 16 15 19 19 N 1.46901 * 109.47390 * 180.02562 * 17 16 15 20 20 H 1.00894 * 109.47833 * 299.98232 * 19 17 16 21 21 C 1.46941 * 109.47940 * 179.97438 * 19 17 16 22 22 C 1.53068 * 109.37547 * 179.97438 * 21 19 17 23 23 O 1.43033 * 109.25183 * 57.64224 * 22 21 19 24 24 C 1.43030 * 113.65269 * 302.09383 * 23 22 21 25 25 C 1.46946 * 109.47638 * 60.00103 * 19 17 16 26 26 C 1.52996 * 109.47422 * 59.99829 * 17 16 15 27 27 C 1.52999 * 109.47358 * 274.99956 * 13 12 10 28 28 H 1.09002 * 109.46792 * 274.14573 * 1 2 3 29 29 H 1.08996 * 109.47438 * 34.14221 * 1 2 3 30 30 H 1.08999 * 109.47313 * 154.14603 * 1 2 3 31 31 H 1.08001 * 125.56646 * 0.07064 * 3 2 1 32 32 H 1.09002 * 109.47096 * 239.68839 * 5 4 3 33 33 H 0.96700 * 114.00227 * 300.00730 * 6 5 4 34 34 H 1.48503 * 110.00118 * 179.97438 * 7 5 4 35 35 H 1.48498 * 109.99920 * 301.32107 * 7 5 4 36 36 H 1.08002 * 126.45848 * 180.24056 * 8 4 3 37 37 H 0.97000 * 119.99519 * 5.07217 * 12 10 9 38 38 H 1.08999 * 109.47039 * 299.99881 * 15 13 12 39 39 H 1.08998 * 109.47001 * 60.00430 * 15 13 12 40 40 H 1.09004 * 109.47198 * 60.00192 * 16 15 13 41 41 H 1.08999 * 109.47264 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.48249 * 299.95939 * 21 19 17 43 43 H 1.08996 * 109.48488 * 60.01583 * 21 19 17 44 44 H 1.08999 * 109.50535 * 297.70628 * 22 21 19 45 45 H 1.09001 * 109.50732 * 177.57541 * 22 21 19 46 46 H 1.08999 * 109.51177 * 297.97409 * 24 23 22 47 47 H 1.08996 * 109.54813 * 177.85634 * 24 23 22 48 48 H 1.09002 * 109.48146 * 299.98061 * 25 19 17 49 49 H 1.08995 * 109.49076 * 60.01961 * 25 19 17 50 50 H 1.09004 * 109.46848 * 60.00235 * 26 17 16 51 51 H 1.08997 * 109.47736 * 180.02562 * 26 17 16 52 52 H 1.09004 * 109.46917 * 300.00184 * 27 13 12 53 53 H 1.08996 * 109.47064 * 60.00358 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0041 5 6 4.7536 1.6189 -0.0082 6 8 5.5400 1.3748 1.1598 7 14 4.1886 3.3942 -0.0164 8 6 3.5779 -0.6887 0.0025 9 6 2.2678 -1.1181 0.0049 10 6 1.8124 -2.5124 0.0115 11 8 0.6267 -2.7647 0.1184 12 7 2.7071 -3.5141 -0.1006 13 6 2.2452 -4.9003 -0.2060 14 1 1.3149 -4.9313 -0.7732 15 6 3.3067 -5.7386 -0.9212 16 6 2.8246 -7.1865 -1.0307 17 6 2.5870 -7.7523 0.3708 18 1 3.5174 -7.7210 0.9378 19 7 2.1246 -9.1427 0.2657 20 1 1.2634 -9.1721 -0.2589 21 6 1.8970 -9.6864 1.6117 22 6 1.4148 -11.1349 1.4995 23 8 2.3858 -11.9008 0.7808 24 6 2.6598 -11.3959 -0.5291 25 6 3.1445 -9.9476 -0.4209 26 6 1.5255 -6.9141 1.0861 27 6 2.0071 -5.4665 1.1953 28 1 -0.3633 0.0743 1.0250 29 1 -0.3634 0.8505 -0.5767 30 1 -0.3634 -0.9248 -0.4481 31 1 1.9081 2.1236 0.0011 32 1 5.3535 1.4244 -0.8973 33 1 5.0688 1.5281 1.9902 34 1 5.3643 4.3014 -0.0199 35 1 3.3434 3.6526 -1.2098 36 1 4.4583 -1.3144 0.0050 37 1 3.6568 -3.3171 -0.1117 38 1 3.4762 -5.3352 -1.9196 39 1 4.2369 -5.7077 -0.3540 40 1 1.8941 -7.2178 -1.5977 41 1 3.5805 -7.7836 -1.5407 42 1 2.8276 -9.6556 2.1785 43 1 1.1405 -9.0900 2.1216 44 1 0.4638 -11.1616 0.9676 45 1 1.2865 -11.5541 2.4974 46 1 1.7514 -11.4316 -1.1304 47 1 3.4322 -12.0039 -1.0000 48 1 3.3137 -9.5449 -1.4196 49 1 4.0748 -9.9164 0.1461 50 1 0.5951 -6.9454 0.5191 51 1 1.3566 -7.3169 2.0847 52 1 2.9375 -5.4356 1.7625 53 1 1.2509 -4.8694 1.7048 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_10803934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:39 Heat of formation + Delta-G solvation = 45.969811 kcal Electronic energy + Delta-G solvation = -32103.369261 eV Core-core repulsion = 27867.830002 eV Total energy + Delta-G solvation = -4235.539259 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.212 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.38316 -42.58393 -40.68289 -39.28710 -37.78923 -37.53548 -35.08540 -33.82298 -33.27523 -31.77883 -31.59746 -30.15694 -28.43133 -27.95965 -26.08750 -25.76035 -24.41683 -23.62507 -23.50073 -22.82710 -21.51533 -21.13603 -20.47356 -18.94191 -18.85655 -18.22908 -17.78891 -17.71050 -17.35689 -16.98922 -16.83537 -16.72057 -16.52376 -16.12580 -15.96416 -15.62266 -15.60431 -15.25295 -15.12191 -14.96792 -14.48839 -14.31442 -14.17846 -14.13731 -13.91362 -13.89128 -13.52841 -13.31559 -13.29908 -13.17155 -12.95151 -12.88320 -12.76696 -12.56905 -12.33441 -12.29782 -11.97668 -11.88483 -11.70980 -11.47294 -11.17549 -11.00267 -10.37753 -10.23218 -9.72240 -9.29158 -4.99553 0.36268 0.63844 1.36225 1.49403 1.54631 1.67891 2.00991 2.24522 2.26755 2.48176 2.55992 2.66177 2.95550 3.13881 3.36274 3.39827 3.57498 3.63958 3.66563 3.71199 3.78894 3.80173 3.88035 3.90423 4.00624 4.05665 4.10568 4.11910 4.18790 4.21535 4.30893 4.32375 4.33718 4.38295 4.50537 4.53553 4.57831 4.62834 4.65840 4.66052 4.68311 4.71927 4.76295 4.80799 4.90467 4.98965 5.02158 5.13559 5.19246 5.22161 5.42733 5.63724 5.87810 5.90902 6.10105 6.39228 6.85797 7.06693 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.001968 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.891407 B =14221.287542 C =14781.072759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.414 5.414 3 C 0.027 3.973 4 C -0.218 4.218 5 C -0.027 4.027 6 O -0.558 6.558 7 Si 0.762 3.238 8 C -0.111 4.111 9 C -0.080 4.080 10 C 0.591 3.409 11 O -0.578 6.578 12 N -0.708 5.708 13 C 0.138 3.862 14 H 0.073 0.927 15 C -0.122 4.122 16 C -0.135 4.135 17 C 0.045 3.955 18 H 0.157 0.843 19 N -0.369 5.369 20 H 0.434 0.566 21 C -0.036 4.036 22 C 0.029 3.971 23 O -0.401 6.401 24 C 0.028 3.972 25 C -0.035 4.035 26 C -0.134 4.134 27 C -0.127 4.127 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.191 0.809 32 H 0.104 0.896 33 H 0.393 0.607 34 H -0.309 1.309 35 H -0.285 1.285 36 H 0.162 0.838 37 H 0.414 0.586 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.087 0.913 45 H 0.125 0.875 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.165 0.835 49 H 0.144 0.856 50 H 0.092 0.908 51 H 0.108 0.892 52 H 0.084 0.916 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -23.482 1.053 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.086 5.086 3 C -0.110 4.110 4 C -0.225 4.225 5 C -0.139 4.139 6 O -0.365 6.365 7 Si 0.670 3.330 8 C -0.137 4.137 9 C -0.193 4.193 10 C 0.380 3.620 11 O -0.460 6.460 12 N -0.359 5.359 13 C 0.035 3.965 14 H 0.091 0.909 15 C -0.160 4.160 16 C -0.173 4.173 17 C -0.057 4.057 18 H 0.174 0.826 19 N 0.052 4.948 20 H 0.272 0.728 21 C -0.157 4.157 22 C -0.047 4.047 23 O -0.320 6.320 24 C -0.049 4.049 25 C -0.157 4.157 26 C -0.172 4.172 27 C -0.166 4.166 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.208 0.792 32 H 0.122 0.878 33 H 0.243 0.757 34 H -0.237 1.237 35 H -0.212 1.212 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.176 0.824 44 H 0.105 0.895 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.144 0.856 48 H 0.182 0.818 49 H 0.162 0.838 50 H 0.111 0.889 51 H 0.126 0.874 52 H 0.103 0.897 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.544 -23.278 0.457 23.421 hybrid contribution 0.044 0.461 -0.605 0.762 sum -2.500 -22.817 -0.148 22.954 Atomic orbital electron populations 1.22411 0.74948 1.05713 1.04760 1.44029 1.07568 1.04979 1.51997 1.22266 0.90073 0.92522 1.06113 1.19868 0.93799 0.95256 1.13555 1.24247 0.91786 1.07252 0.90603 1.86442 1.41552 1.92178 1.16376 0.94106 0.79689 0.73208 0.85977 1.21387 0.94495 0.94728 1.03078 1.20264 0.90704 0.88100 1.20211 1.17032 0.85409 0.84015 0.75532 1.90784 1.17715 1.85250 1.52220 1.45651 1.10074 1.06084 1.74048 1.21286 0.98967 0.79194 0.97099 0.90876 1.21730 0.98272 0.94016 1.02019 1.22065 1.05613 0.95865 0.93709 1.23409 1.02888 0.77750 1.01664 0.82561 1.45409 1.18798 1.14212 1.16362 0.72845 1.24562 1.10354 0.97930 0.82900 1.23296 0.92157 0.88466 1.00827 1.88323 1.61220 1.53718 1.28702 1.23327 1.04031 0.92571 0.84956 1.24607 0.93652 0.92658 1.04755 1.22009 0.98133 0.93791 1.03291 1.21804 1.02685 0.95628 0.96497 0.89593 0.87950 0.89152 0.79187 0.87830 0.75708 1.23740 1.21232 0.82079 0.74860 0.90350 0.88747 0.88507 0.86270 0.83822 0.82355 0.89504 0.85718 0.89494 0.85580 0.81768 0.83780 0.88915 0.87365 0.89748 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -1.12 10.63 127.77 1.36 0.23 16 2 N -0.41 6.40 3.16 -534.32 -1.69 4.71 16 3 C 0.03 -0.46 9.94 83.48 0.83 0.37 16 4 C -0.22 3.52 5.44 -20.12 -0.11 3.41 16 5 C -0.03 0.42 3.02 71.23 0.22 0.63 16 6 O -0.56 8.19 12.88 -148.98 -1.92 6.27 16 7 Si 0.76 -11.63 30.59 68.60 2.10 -9.54 16 8 C -0.11 1.96 10.29 22.57 0.23 2.19 16 9 C -0.08 1.29 6.88 40.35 0.28 1.57 16 10 C 0.59 -10.86 7.73 86.45 0.67 -10.19 16 11 O -0.58 7.27 14.33 -4.33 -0.06 7.21 16 12 N -0.71 20.02 5.06 -446.51 -2.26 17.76 16 13 C 0.14 -4.96 2.42 44.99 0.11 -4.86 16 14 H 0.07 -2.29 7.65 -2.39 -0.02 -2.31 16 15 C -0.12 5.39 5.39 30.60 0.16 5.56 16 16 C -0.13 7.26 4.90 30.59 0.15 7.41 16 17 C 0.04 -2.59 1.61 44.91 0.07 -2.52 16 18 H 0.16 -9.40 8.14 -2.38 -0.02 -9.42 16 19 N -0.37 22.78 0.24 -870.39 -0.21 22.57 16 20 H 0.43 -28.33 8.32 -89.70 -0.75 -29.08 16 21 C -0.04 2.07 4.93 86.32 0.43 2.50 16 22 C 0.03 -1.45 6.96 72.00 0.50 -0.95 16 23 O -0.40 16.84 10.84 -148.98 -1.62 15.22 16 24 C 0.03 -1.40 6.96 72.02 0.50 -0.89 16 25 C -0.04 2.08 4.94 86.33 0.43 2.51 16 26 C -0.13 6.81 4.89 30.58 0.15 6.96 16 27 C -0.13 4.96 5.49 30.58 0.17 5.13 16 28 H 0.09 -1.65 8.14 -2.39 -0.02 -1.67 16 29 H 0.10 -2.21 8.14 -2.39 -0.02 -2.23 16 30 H 0.09 -1.36 6.23 -2.39 -0.01 -1.37 16 31 H 0.19 -4.08 6.19 -2.91 -0.02 -4.10 16 32 H 0.10 -1.47 7.96 -2.39 -0.02 -1.49 16 33 H 0.39 -8.69 8.70 -74.06 -0.64 -9.33 16 34 H -0.31 1.81 7.11 99.48 0.71 2.52 16 35 H -0.29 3.02 7.11 99.48 0.71 3.73 16 36 H 0.16 -3.62 7.45 -2.91 -0.02 -3.64 16 37 H 0.41 -13.15 7.51 -92.71 -0.70 -13.85 16 38 H 0.08 -3.14 8.14 -2.39 -0.02 -3.16 16 39 H 0.09 -4.32 8.14 -2.39 -0.02 -4.34 16 40 H 0.10 -5.22 8.14 -2.38 -0.02 -5.24 16 41 H 0.12 -6.88 6.28 -2.39 -0.02 -6.90 16 42 H 0.14 -8.36 8.14 -2.38 -0.02 -8.38 16 43 H 0.16 -9.62 6.15 -2.39 -0.01 -9.64 16 44 H 0.09 -4.46 8.14 -2.39 -0.02 -4.48 16 45 H 0.12 -5.80 8.14 -2.39 -0.02 -5.82 16 46 H 0.09 -4.52 8.14 -2.39 -0.02 -4.54 16 47 H 0.13 -5.98 8.14 -2.39 -0.02 -6.00 16 48 H 0.16 -10.36 6.15 -2.39 -0.01 -10.38 16 49 H 0.14 -8.54 8.14 -2.39 -0.02 -8.56 16 50 H 0.09 -4.67 8.14 -2.38 -0.02 -4.69 16 51 H 0.11 -5.76 6.29 -2.39 -0.02 -5.78 16 52 H 0.08 -3.39 8.14 -2.38 -0.02 -3.41 16 53 H 0.05 -1.45 8.09 -2.39 -0.02 -1.47 16 Total: 1.00 -81.11 400.72 -0.63 -81.75 By element: Atomic # 1 Polarization: -163.90 SS G_CDS: -1.11 Total: -165.01 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.14 Total: 19.05 kcal Atomic # 7 Polarization: 49.21 SS G_CDS: -4.16 Total: 45.05 kcal Atomic # 8 Polarization: 32.30 SS G_CDS: -3.60 Total: 28.70 kcal Atomic # 14 Polarization: -11.63 SS G_CDS: 2.10 Total: -9.54 kcal Total: -81.11 -0.63 -81.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_10803934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.717 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds