Wall clock time and date at job start Sun Mar 7 2021 09:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37646 * 125.67988 * 2 1 4 4 C 1.46675 * 126.23371 * 359.97438 * 3 2 1 5 5 O 1.21690 * 120.00154 * 4.16458 * 4 3 2 6 6 N 1.34780 * 119.99630 * 184.16762 * 4 3 2 7 7 C 1.46502 * 119.99496 * 174.82710 * 6 4 3 8 8 H 1.08997 * 109.47265 * 324.71808 * 7 6 4 9 9 C 1.52999 * 109.47441 * 84.72562 * 7 6 4 10 10 C 1.52992 * 109.47357 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47248 * 299.99659 * 10 9 7 12 12 H 1.09005 * 109.46841 * 300.00267 * 11 10 9 13 13 N 1.46897 * 109.47703 * 180.02562 * 11 10 9 14 14 H 1.00906 * 109.47443 * 300.00166 * 13 11 10 15 15 C 1.46937 * 109.48471 * 179.97438 * 13 11 10 16 16 C 1.53068 * 109.38083 * 179.97438 * 15 13 11 17 17 O 1.43029 * 109.25600 * 57.62696 * 16 15 13 18 18 C 1.43034 * 113.65545 * 302.10164 * 17 16 15 19 19 C 1.46937 * 109.47844 * 60.01535 * 13 11 10 20 20 C 1.52998 * 109.47176 * 59.99778 * 11 10 9 21 21 C 1.53001 * 109.47231 * 300.00439 * 20 11 10 22 22 C 1.37880 * 107.53291 * 179.74173 * 3 2 1 23 23 C 1.39837 * 107.08074 * 0.21764 * 22 3 2 24 24 C 1.35450 * 107.87041 * 0.02562 * 23 22 3 25 25 C 1.50699 * 125.56597 * 180.02562 * 24 23 22 26 26 O 1.42895 * 109.47189 * 209.97219 * 25 24 23 27 27 Si 1.86299 * 109.47083 * 329.97477 * 25 24 23 28 28 H 1.09001 * 109.47322 * 90.00022 * 1 2 3 29 29 H 1.08995 * 109.47495 * 210.00635 * 1 2 3 30 30 H 1.09005 * 109.47079 * 330.00335 * 1 2 3 31 31 H 0.96998 * 120.00699 * 354.54964 * 6 4 3 32 32 H 1.09006 * 109.46635 * 300.00027 * 9 7 6 33 33 H 1.08997 * 109.47507 * 59.99393 * 9 7 6 34 34 H 1.09002 * 109.47319 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47468 * 60.00032 * 10 9 7 36 36 H 1.08999 * 109.48605 * 299.96432 * 15 13 11 37 37 H 1.09005 * 109.48320 * 60.01334 * 15 13 11 38 38 H 1.09001 * 109.49774 * 297.69666 * 16 15 13 39 39 H 1.08996 * 109.54635 * 177.59307 * 16 15 13 40 40 H 1.09002 * 109.50465 * 297.97694 * 18 17 16 41 41 H 1.08999 * 109.54771 * 177.85747 * 18 17 16 42 42 H 1.09002 * 109.48857 * 299.98069 * 19 13 11 43 43 H 1.08998 * 109.49096 * 60.04154 * 19 13 11 44 44 H 1.09000 * 109.47459 * 180.02562 * 20 11 10 45 45 H 1.09005 * 109.46836 * 60.00486 * 20 11 10 46 46 H 1.08991 * 109.47180 * 299.99632 * 21 20 11 47 47 H 1.08999 * 109.46915 * 179.97438 * 21 20 11 48 48 H 1.07996 * 126.45695 * 180.26265 * 22 3 2 49 49 H 1.08007 * 126.06449 * 180.02562 * 23 22 3 50 50 H 1.09006 * 109.46872 * 89.97528 * 25 24 23 51 51 H 0.96702 * 113.99794 * 59.99917 * 26 25 24 52 52 H 1.48500 * 109.99910 * 58.68193 * 27 25 24 53 53 H 1.48497 * 109.99694 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8125 2.5124 -0.0005 5 8 0.6244 2.7645 0.0755 6 7 2.7100 3.5143 -0.0853 7 6 2.2511 4.9008 -0.2001 8 1 1.3398 4.9337 -0.7971 9 6 1.9675 5.4614 1.1950 10 6 1.4889 6.9096 1.0751 11 6 2.5731 7.7507 0.3983 12 1 3.4844 7.7174 0.9955 13 7 2.1139 9.1413 0.2837 14 1 1.2701 9.1726 -0.2689 15 6 3.1552 9.9494 -0.3657 16 6 2.6741 11.3976 -0.4845 17 8 2.3567 11.8975 0.8175 18 6 1.3628 11.1287 1.5008 19 6 1.8422 9.6796 1.6237 20 6 2.8568 7.1902 -0.9968 21 6 3.3353 5.7419 -0.8769 22 6 3.5780 0.6887 0.0059 23 6 3.5520 -0.7095 0.0044 24 6 2.2554 -1.1011 -0.0028 25 6 1.7707 -2.5280 -0.0062 26 8 0.5161 -2.6033 -0.6861 27 14 3.0157 -3.6046 -0.8790 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 3.6596 3.3178 -0.0662 32 1 1.1954 4.8619 1.6773 33 1 2.8788 5.4286 1.7920 34 1 1.2864 7.3089 2.0689 35 1 0.5776 6.9429 0.4780 36 1 4.0663 9.9165 0.2317 37 1 3.3574 9.5508 -1.3599 38 1 1.7860 11.4354 -1.1154 39 1 3.4611 12.0082 -0.9270 40 1 0.4299 11.1572 0.9378 41 1 1.2006 11.5439 2.4955 42 1 1.0696 9.0810 2.1063 43 1 2.7537 9.6469 2.2204 44 1 3.6295 7.7891 -1.4788 45 1 1.9454 7.2235 -1.5939 46 1 4.2466 5.7086 -0.2798 47 1 3.5370 5.3425 -1.8708 48 1 4.4584 1.3142 0.0115 49 1 4.4131 -1.3614 0.0084 50 1 1.6487 -2.8727 1.0207 51 1 0.5499 -2.3112 -1.6073 52 1 4.3331 -3.5103 -0.2002 53 1 2.5496 -5.0145 -0.8885 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_10803936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:43 Heat of formation + Delta-G solvation = 46.018326 kcal Electronic energy + Delta-G solvation = -32201.951869 eV Core-core repulsion = 27966.414714 eV Total energy + Delta-G solvation = -4235.537156 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.212 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.37714 -42.63881 -40.70566 -39.29100 -37.82881 -37.58137 -35.07333 -33.76879 -33.26757 -31.80143 -31.76621 -30.43950 -28.27546 -27.51254 -26.62762 -26.08139 -23.94904 -23.59401 -23.44711 -22.79944 -21.47960 -21.39871 -20.43095 -18.97691 -18.86701 -18.33719 -18.01819 -17.76842 -17.42921 -17.00229 -16.96081 -16.61440 -16.33515 -16.11918 -16.04637 -15.55654 -15.47055 -15.23520 -14.98602 -14.84721 -14.53916 -14.43111 -14.29910 -14.17033 -13.90724 -13.89588 -13.74807 -13.34541 -13.25047 -13.09657 -12.94372 -12.86366 -12.76313 -12.55482 -12.29585 -12.27315 -12.08275 -11.88019 -11.69500 -11.46575 -11.16205 -10.99945 -10.74267 -10.21604 -9.80595 -9.15148 -4.97860 0.32285 0.64505 1.12506 1.48754 1.67387 1.70718 1.99869 2.28428 2.30478 2.48751 2.56617 2.66618 2.96162 3.14320 3.28081 3.37052 3.40907 3.51612 3.60537 3.68368 3.72644 3.79892 3.88901 3.91301 3.92086 4.06666 4.11289 4.12861 4.22234 4.25249 4.30262 4.31606 4.34720 4.37791 4.48048 4.51532 4.53822 4.58863 4.66145 4.67236 4.69739 4.77459 4.81486 4.91526 4.99713 5.00397 5.03719 5.09244 5.19630 5.23568 5.44376 5.67979 5.91194 5.95881 6.05934 6.42360 6.54204 7.09388 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.001883 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.606250 B =14864.051775 C =15270.133737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.403 5.403 3 C -0.081 4.081 4 C 0.591 3.409 5 O -0.581 6.581 6 N -0.705 5.705 7 C 0.139 3.861 8 H 0.072 0.928 9 C -0.128 4.128 10 C -0.135 4.135 11 C 0.045 3.955 12 H 0.157 0.843 13 N -0.369 5.369 14 H 0.434 0.566 15 C -0.035 4.035 16 C 0.027 3.973 17 O -0.401 6.401 18 C 0.029 3.971 19 C -0.036 4.036 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.216 4.216 24 C 0.012 3.988 25 C -0.056 4.056 26 O -0.555 6.555 27 Si 0.806 3.194 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.178 0.822 49 H 0.156 0.844 50 H 0.111 0.889 51 H 0.394 0.606 52 H -0.274 1.274 53 H -0.302 1.302 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 25.476 -2.414 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.076 5.076 3 C -0.194 4.194 4 C 0.380 3.620 5 O -0.463 6.463 6 N -0.356 5.356 7 C 0.035 3.965 8 H 0.090 0.910 9 C -0.167 4.167 10 C -0.173 4.173 11 C -0.057 4.057 12 H 0.175 0.825 13 N 0.052 4.948 14 H 0.271 0.729 15 C -0.156 4.156 16 C -0.049 4.049 17 O -0.320 6.320 18 C -0.047 4.047 19 C -0.158 4.158 20 C -0.173 4.173 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.240 4.240 24 C -0.106 4.106 25 C -0.165 4.165 26 O -0.362 6.362 27 Si 0.709 3.291 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.195 0.805 49 H 0.173 0.827 50 H 0.128 0.872 51 H 0.244 0.756 52 H -0.200 1.200 53 H -0.230 1.230 Dipole moment (debyes) X Y Z Total from point charges 4.062 24.996 -1.519 25.370 hybrid contribution -0.640 -0.643 0.585 1.080 sum 3.421 24.353 -0.933 24.610 Atomic orbital electron populations 1.22276 0.75596 1.04639 1.04421 1.43905 1.07160 1.04550 1.51972 1.20360 0.91088 0.87831 1.20123 1.17039 0.85440 0.84038 0.75486 1.90785 1.17807 1.85270 1.52405 1.45606 1.10013 1.05895 1.74114 1.21285 0.98989 0.79241 0.97012 0.90964 1.21820 1.02487 0.95620 0.96800 1.22009 0.97924 0.93813 1.03528 1.23412 1.02538 0.77680 1.02053 0.82517 1.45412 1.18688 1.14253 1.16451 0.72851 1.24601 0.92903 0.92533 1.05596 1.23329 1.03820 0.92683 0.85094 1.88322 1.59508 1.53791 1.30354 1.23298 0.91660 0.88404 1.01375 1.24562 1.10004 0.97991 0.83194 1.22077 1.05534 0.96025 0.93641 1.21727 0.97880 0.93806 1.02480 1.21648 0.94743 0.95073 1.03566 1.20929 0.95144 0.96355 1.11576 1.21322 0.91309 0.89344 1.08669 1.25073 0.94666 0.94594 1.02167 1.86477 1.30141 1.89220 1.30375 0.93110 0.73685 0.74376 0.87905 0.89754 0.89100 0.89668 0.74623 0.93579 0.89698 0.87557 0.89004 0.83746 0.81647 0.89514 0.85527 0.89531 0.85781 0.82492 0.83807 0.86125 0.88543 0.88591 0.90007 0.80508 0.82661 0.87173 0.75565 1.20011 1.22958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.97 9.41 127.77 1.20 0.23 16 2 N -0.40 5.27 3.16 -519.70 -1.64 3.63 16 3 C -0.08 1.27 6.89 40.35 0.28 1.55 16 4 C 0.59 -10.76 7.73 86.45 0.67 -10.09 16 5 O -0.58 6.71 14.29 -4.32 -0.06 6.65 16 6 N -0.71 20.53 5.06 -446.50 -2.26 18.27 16 7 C 0.14 -5.04 2.41 44.99 0.11 -4.93 16 8 H 0.07 -2.28 7.66 -2.39 -0.02 -2.30 16 9 C -0.13 4.99 5.49 30.59 0.17 5.16 16 10 C -0.13 6.81 4.90 30.59 0.15 6.96 16 11 C 0.04 -2.62 1.61 44.91 0.07 -2.55 16 12 H 0.16 -9.49 8.14 -2.38 -0.02 -9.51 16 13 N -0.37 22.87 0.24 -870.40 -0.21 22.66 16 14 H 0.43 -28.38 8.32 -89.69 -0.75 -29.12 16 15 C -0.03 2.08 4.93 86.32 0.43 2.50 16 16 C 0.03 -1.38 6.96 72.00 0.50 -0.88 16 17 O -0.40 16.89 10.84 -148.98 -1.62 15.27 16 18 C 0.03 -1.45 6.97 72.02 0.50 -0.95 16 19 C -0.04 2.07 4.94 86.34 0.43 2.49 16 20 C -0.13 7.37 4.90 30.59 0.15 7.52 16 21 C -0.12 5.47 5.39 30.60 0.16 5.63 16 22 C -0.12 2.38 10.36 22.57 0.23 2.62 16 23 C -0.22 3.46 9.37 22.01 0.21 3.67 16 24 C 0.01 -0.17 6.14 41.34 0.25 0.09 16 25 C -0.06 0.82 2.88 71.24 0.21 1.02 16 26 O -0.55 8.11 10.40 -148.98 -1.55 6.56 16 27 Si 0.81 -12.95 31.29 68.60 2.15 -10.81 16 28 H 0.08 -1.32 8.14 -2.39 -0.02 -1.34 16 29 H 0.09 -1.16 6.82 -2.39 -0.02 -1.18 16 30 H 0.08 -0.93 6.24 -2.38 -0.01 -0.94 16 31 H 0.42 -13.99 7.50 -92.71 -0.70 -14.69 16 32 H 0.05 -1.31 8.06 -2.38 -0.02 -1.33 16 33 H 0.08 -3.42 8.14 -2.39 -0.02 -3.44 16 34 H 0.11 -5.62 6.28 -2.39 -0.01 -5.63 16 35 H 0.09 -4.59 8.14 -2.39 -0.02 -4.61 16 36 H 0.14 -8.63 8.14 -2.39 -0.02 -8.65 16 37 H 0.17 -10.54 6.15 -2.38 -0.01 -10.56 16 38 H 0.09 -4.53 8.14 -2.39 -0.02 -4.55 16 39 H 0.13 -6.05 8.14 -2.39 -0.02 -6.07 16 40 H 0.09 -4.44 8.14 -2.39 -0.02 -4.46 16 41 H 0.12 -5.76 8.14 -2.39 -0.02 -5.78 16 42 H 0.16 -9.49 6.15 -2.39 -0.01 -9.51 16 43 H 0.14 -8.37 8.14 -2.39 -0.02 -8.39 16 44 H 0.12 -7.08 6.29 -2.39 -0.02 -7.09 16 45 H 0.10 -5.25 8.14 -2.38 -0.02 -5.27 16 46 H 0.10 -4.53 8.14 -2.39 -0.02 -4.55 16 47 H 0.08 -3.41 8.14 -2.39 -0.02 -3.43 16 48 H 0.18 -4.80 7.45 -2.91 -0.02 -4.82 16 49 H 0.16 -2.78 6.62 -2.91 -0.02 -2.79 16 50 H 0.11 -1.45 7.96 -2.38 -0.02 -1.47 16 51 H 0.39 -8.55 8.70 -74.06 -0.64 -9.19 16 52 H -0.27 3.42 6.76 99.48 0.67 4.09 16 53 H -0.30 2.29 7.11 99.48 0.71 3.00 16 Total: 1.00 -80.68 396.47 -0.62 -81.31 By element: Atomic # 1 Polarization: -162.45 SS G_CDS: -1.15 Total: -163.59 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 5.72 Total: 20.05 kcal Atomic # 7 Polarization: 48.67 SS G_CDS: -4.11 Total: 44.56 kcal Atomic # 8 Polarization: 31.70 SS G_CDS: -3.23 Total: 28.48 kcal Atomic # 14 Polarization: -12.95 SS G_CDS: 2.15 Total: -10.81 kcal Total: -80.68 -0.62 -81.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_10803936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.326 kcal (2) G-P(sol) polarization free energy of solvation -80.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds