Wall clock time and date at job start Sun Mar 7 2021 09:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.46825 * 2 1 4 4 C 1.50700 * 109.46967 * 119.99758 * 2 1 3 5 5 C 1.38236 * 119.99793 * 65.00528 * 4 2 1 6 6 C 1.38234 * 119.99469 * 179.97438 * 5 4 2 7 7 C 1.38231 * 120.00578 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00277 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47269 * 89.99552 * 8 7 6 10 10 O 1.21278 * 119.99866 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46963 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47067 * 300.00341 * 16 15 14 18 18 N 1.46898 * 109.47374 * 180.02562 * 16 15 14 19 19 H 1.00901 * 109.47602 * 299.98299 * 18 16 15 20 20 C 1.46937 * 109.47888 * 179.97438 * 18 16 15 21 21 C 1.53078 * 109.37447 * 179.97438 * 20 18 16 22 22 O 1.43024 * 109.24870 * 57.64454 * 21 20 18 23 23 C 1.43039 * 113.65248 * 302.09117 * 22 21 20 24 24 C 1.46931 * 109.48059 * 59.99896 * 18 16 15 25 25 C 1.52997 * 109.47092 * 60.00194 * 16 15 14 26 26 C 1.53002 * 109.46799 * 205.00309 * 12 11 9 27 27 C 1.38242 * 119.99469 * 0.24553 * 7 6 5 28 28 C 1.38231 * 119.99706 * 244.97611 * 4 2 1 29 29 H 0.96699 * 114.00404 * 300.00375 * 1 2 3 30 30 H 1.08998 * 109.46967 * 240.00315 * 2 1 3 31 31 H 1.48503 * 110.00053 * 299.99683 * 3 2 1 32 32 H 1.48493 * 110.00514 * 61.31991 * 3 2 1 33 33 H 1.07991 * 120.00288 * 359.97341 * 5 4 2 34 34 H 1.08008 * 119.99824 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47133 * 329.99752 * 8 7 6 36 36 H 1.09003 * 109.47048 * 209.99264 * 8 7 6 37 37 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 39 39 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 40 40 H 1.09000 * 109.47437 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.47508 * 59.99571 * 15 14 12 42 42 H 1.09001 * 109.48839 * 299.95633 * 20 18 16 43 43 H 1.08999 * 109.48917 * 60.02296 * 20 18 16 44 44 H 1.08998 * 109.51095 * 297.70852 * 21 20 18 45 45 H 1.09005 * 109.50589 * 177.57572 * 21 20 18 46 46 H 1.09000 * 109.50911 * 297.97406 * 23 22 21 47 47 H 1.08996 * 109.54325 * 177.85678 * 23 22 21 48 48 H 1.09004 * 109.48911 * 299.98497 * 24 18 16 49 49 H 1.09001 * 109.48584 * 60.01760 * 24 18 16 50 50 H 1.09001 * 109.47375 * 180.02562 * 25 16 15 51 51 H 1.09002 * 109.47497 * 59.99850 * 25 16 15 52 52 H 1.09002 * 109.47075 * 299.99543 * 26 12 11 53 53 H 1.08996 * 109.47407 * 60.00500 * 26 12 11 54 54 H 1.08000 * 119.99566 * 179.72884 * 27 7 6 55 55 H 1.07995 * 120.00575 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1460 -2.7118 2.5268 7 6 2.8532 -2.0137 3.4877 8 6 3.3555 -2.7240 4.7181 9 6 4.7370 -3.2663 4.4564 10 8 5.2622 -3.0925 3.3771 11 7 5.3894 -3.9434 5.4221 12 6 6.7321 -4.4710 5.1675 13 1 6.8052 -4.7927 4.1286 14 6 7.7688 -3.3785 5.4372 15 6 9.1712 -3.9293 5.1706 16 6 9.4347 -5.1213 6.0929 17 1 9.3619 -4.7999 7.1319 18 7 10.7813 -5.6498 5.8375 19 1 10.8490 -5.9476 4.8758 20 6 11.0347 -6.7942 6.7236 21 6 12.4381 -7.3434 6.4550 22 8 13.3981 -6.3021 6.6543 23 6 13.1790 -5.1541 5.8295 24 6 11.7768 -4.6007 6.0967 25 6 8.3980 -6.2137 5.8233 26 6 6.9952 -5.6628 6.0902 27 6 3.0949 -0.6626 3.3224 28 6 2.6391 -0.0123 2.1910 29 1 -0.3934 0.4417 0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5614 2.4679 -1.2086 32 1 1.5878 2.4586 1.2241 33 1 1.1318 -2.6055 0.6480 34 1 1.9530 -3.7663 2.6583 35 1 2.6830 -3.5461 4.9631 36 1 3.3922 -2.0236 5.5525 37 1 4.9694 -4.0820 6.2855 38 1 7.5814 -2.5295 4.7798 39 1 7.6958 -3.0568 6.4760 40 1 9.9098 -3.1513 5.3632 41 1 9.2439 -4.2508 4.1316 42 1 10.9626 -6.4726 7.7626 43 1 10.2968 -7.5732 6.5316 44 1 12.4982 -7.7022 5.4275 45 1 12.6448 -8.1652 7.1408 46 1 13.2644 -5.4379 4.7806 47 1 13.9218 -4.3911 6.0619 48 1 11.5896 -3.7514 5.4396 49 1 11.7041 -4.2793 7.1358 50 1 8.5854 -7.0628 6.4806 51 1 8.4706 -6.5352 4.7843 52 1 6.9223 -5.3410 7.1291 53 1 6.2567 -6.4410 5.8981 54 1 3.6437 -0.1163 4.0752 55 1 2.8318 1.0422 2.0598 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_12335836.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:05 Heat of formation + Delta-G solvation = 17.314340 kcal Electronic energy + Delta-G solvation = -32829.860244 eV Core-core repulsion = 28530.278161 eV Total energy + Delta-G solvation = -4299.582083 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.216 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.36979 -41.27911 -40.37202 -39.32595 -37.92125 -37.51162 -34.79618 -34.05140 -33.26411 -31.97295 -31.75128 -31.01453 -29.56804 -27.98138 -26.07799 -25.79091 -23.86461 -23.76067 -23.52813 -23.36408 -22.13508 -21.46058 -21.09711 -18.89059 -18.64063 -18.38235 -17.88081 -17.75277 -17.63623 -17.03913 -16.97597 -16.68514 -16.47149 -16.28170 -16.20498 -16.06871 -15.73857 -15.35487 -15.24668 -14.87844 -14.76012 -14.52696 -14.31707 -14.17697 -14.02822 -13.91012 -13.88459 -13.33017 -13.29406 -13.15286 -12.93765 -12.89623 -12.79255 -12.76009 -12.53287 -12.32291 -12.27341 -12.04555 -11.87830 -11.66968 -11.64714 -11.42098 -11.00204 -10.95781 -10.65854 -10.06605 -9.91081 -9.66017 -5.00261 0.20723 0.41967 0.65029 1.24760 1.51523 1.64159 1.89770 2.15459 2.49200 2.56349 2.66474 2.75521 2.96261 3.14491 3.36431 3.37903 3.41644 3.58578 3.64177 3.72710 3.76088 3.79536 3.84452 3.86557 3.92889 4.01977 4.04228 4.08586 4.12815 4.15614 4.25634 4.31597 4.33442 4.34841 4.43539 4.50639 4.53874 4.55438 4.59675 4.59877 4.66355 4.68480 4.69332 4.78936 4.82875 4.91955 4.99300 5.01851 5.04626 5.05089 5.23195 5.25999 5.35039 5.51194 5.54528 5.55549 5.91202 5.98616 6.41750 6.54302 7.27830 Molecular weight = 362.22amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.001667 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.075871 B =16790.177228 C =17552.353027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.085 4.085 3 Si 0.766 3.234 4 C -0.125 4.125 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.069 4.069 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.573 6.573 11 N -0.721 5.721 12 C 0.134 3.866 13 H 0.066 0.934 14 C -0.126 4.126 15 C -0.136 4.136 16 C 0.046 3.954 17 H 0.158 0.842 18 N -0.370 5.370 19 H 0.433 0.567 20 C -0.035 4.035 21 C 0.027 3.973 22 O -0.401 6.401 23 C 0.029 3.971 24 C -0.035 4.035 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.109 4.109 28 C -0.125 4.125 29 H 0.386 0.614 30 H 0.118 0.882 31 H -0.308 1.308 32 H -0.279 1.279 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.417 0.583 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.086 0.914 47 H 0.125 0.875 48 H 0.158 0.842 49 H 0.145 0.855 50 H 0.118 0.882 51 H 0.093 0.907 52 H 0.095 0.905 53 H 0.077 0.923 54 H 0.143 0.857 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.675 -13.610 15.945 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.194 4.194 3 Si 0.672 3.328 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.070 4.070 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.451 6.451 11 N -0.373 5.373 12 C 0.030 3.970 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.174 4.174 16 C -0.056 4.056 17 H 0.175 0.825 18 N 0.051 4.949 19 H 0.271 0.729 20 C -0.156 4.156 21 C -0.049 4.049 22 O -0.319 6.319 23 C -0.048 4.048 24 C -0.157 4.157 25 C -0.174 4.174 26 C -0.159 4.159 27 C -0.127 4.127 28 C -0.143 4.143 29 H 0.235 0.765 30 H 0.136 0.864 31 H -0.236 1.236 32 H -0.205 1.205 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.254 0.746 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.182 0.818 44 H 0.104 0.896 45 H 0.144 0.856 46 H 0.104 0.896 47 H 0.143 0.857 48 H 0.176 0.824 49 H 0.163 0.837 50 H 0.136 0.864 51 H 0.111 0.889 52 H 0.114 0.886 53 H 0.096 0.904 54 H 0.161 0.839 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.079 -12.926 15.037 30.428 hybrid contribution -1.889 -0.048 -0.191 1.899 sum 21.190 -12.975 14.846 28.944 Atomic orbital electron populations 1.86578 1.18652 1.80360 1.50213 1.25228 0.83365 1.11887 0.98919 0.94118 0.90282 0.72087 0.76302 1.20287 1.00283 0.95054 0.96922 1.21102 0.99296 0.94151 0.98152 1.21229 0.98114 1.00286 0.93789 1.19602 0.97362 0.93872 0.96139 1.20775 0.93833 1.02641 0.97032 1.20745 0.87586 0.77468 0.83777 1.90753 1.69531 1.58689 1.26174 1.45984 1.18080 1.56379 1.16856 1.21192 0.81302 0.94120 1.00427 0.91595 1.21802 0.93541 0.97968 1.03196 1.22027 0.98062 0.96950 1.00371 1.23409 0.79216 0.96662 1.06315 0.82476 1.45423 1.14354 1.15511 1.19584 0.72919 1.24591 1.01760 0.90483 0.98776 1.23326 0.85196 0.91266 1.05136 1.88322 1.52629 1.27418 1.63579 1.23300 0.95519 0.89350 0.96611 1.24562 0.88265 0.92364 1.10520 1.22084 0.92273 0.97370 1.05711 1.21720 0.97307 0.96311 1.00515 1.21214 0.99298 0.94336 0.97836 1.21203 0.98512 1.00230 0.94336 0.76513 0.86384 1.23641 1.20528 0.86262 0.85004 0.85807 0.85229 0.74631 0.93328 0.89511 0.87444 0.89294 0.83708 0.81819 0.89571 0.85552 0.89589 0.85697 0.82393 0.83739 0.86391 0.88868 0.88626 0.90450 0.83888 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.61 12.83 -148.98 -1.91 1.70 16 2 C -0.09 0.85 2.80 71.24 0.20 1.05 16 3 Si 0.77 -8.92 29.88 68.60 2.05 -6.87 16 4 C -0.13 1.32 5.35 -19.87 -0.11 1.22 16 5 C -0.11 1.09 9.69 22.27 0.22 1.31 16 6 C -0.12 1.55 9.70 22.27 0.22 1.77 16 7 C -0.07 1.14 4.37 -19.87 -0.09 1.05 16 8 C -0.10 2.59 5.83 29.10 0.17 2.76 16 9 C 0.52 -12.14 7.79 87.66 0.68 -11.46 16 10 O -0.57 7.81 15.70 -3.02 -0.05 7.77 16 11 N -0.72 23.67 5.08 -442.52 -2.25 21.42 16 12 C 0.13 -5.06 2.45 44.99 0.11 -4.95 16 13 H 0.07 -2.08 7.58 -2.39 -0.02 -2.10 16 14 C -0.13 5.13 5.49 30.59 0.17 5.30 16 15 C -0.14 6.98 4.90 30.60 0.15 7.13 16 16 C 0.05 -2.68 1.61 44.92 0.07 -2.61 16 17 H 0.16 -9.61 8.14 -2.39 -0.02 -9.63 16 18 N -0.37 22.97 0.24 -870.43 -0.21 22.76 16 19 H 0.43 -28.30 8.32 -89.69 -0.75 -29.05 16 20 C -0.03 2.06 4.93 86.32 0.43 2.49 16 21 C 0.03 -1.38 6.96 72.01 0.50 -0.88 16 22 O -0.40 16.96 10.84 -148.98 -1.62 15.34 16 23 C 0.03 -1.44 6.97 72.02 0.50 -0.94 16 24 C -0.04 2.07 4.93 86.33 0.43 2.49 16 25 C -0.14 7.45 4.90 30.61 0.15 7.60 16 26 C -0.12 5.51 5.40 30.61 0.17 5.68 16 27 C -0.11 1.69 9.70 22.27 0.22 1.91 16 28 C -0.13 1.64 8.67 22.27 0.19 1.83 16 29 H 0.39 -4.77 8.70 -74.06 -0.64 -5.41 16 30 H 0.12 -1.28 7.96 -2.39 -0.02 -1.29 16 31 H -0.31 0.91 7.11 99.48 0.71 1.62 16 32 H -0.28 2.44 7.01 99.48 0.70 3.14 16 33 H 0.12 -1.16 8.06 -2.91 -0.02 -1.19 16 34 H 0.13 -2.20 8.06 -2.91 -0.02 -2.22 16 35 H 0.12 -3.55 8.09 -2.39 -0.02 -3.57 16 36 H 0.13 -3.87 8.08 -2.39 -0.02 -3.89 16 37 H 0.42 -15.87 8.60 -92.71 -0.80 -16.67 16 38 H 0.05 -1.50 8.14 -2.39 -0.02 -1.52 16 39 H 0.09 -3.69 8.14 -2.39 -0.02 -3.71 16 40 H 0.11 -5.78 6.28 -2.39 -0.01 -5.80 16 41 H 0.09 -4.46 8.14 -2.39 -0.02 -4.48 16 42 H 0.14 -8.68 8.14 -2.39 -0.02 -8.70 16 43 H 0.16 -10.40 6.15 -2.39 -0.01 -10.41 16 44 H 0.09 -4.49 8.14 -2.39 -0.02 -4.51 16 45 H 0.13 -6.04 8.14 -2.38 -0.02 -6.06 16 46 H 0.09 -4.42 8.14 -2.39 -0.02 -4.44 16 47 H 0.13 -5.85 8.14 -2.39 -0.02 -5.87 16 48 H 0.16 -9.65 6.15 -2.38 -0.01 -9.67 16 49 H 0.14 -8.50 8.14 -2.39 -0.02 -8.52 16 50 H 0.12 -6.88 6.29 -2.39 -0.02 -6.90 16 51 H 0.09 -5.02 8.14 -2.39 -0.02 -5.04 16 52 H 0.10 -4.59 8.14 -2.39 -0.02 -4.61 16 53 H 0.08 -3.23 8.14 -2.39 -0.02 -3.25 16 54 H 0.14 -2.93 8.06 -2.91 -0.02 -2.95 16 55 H 0.14 -2.18 4.85 -2.91 -0.01 -2.20 16 Total: 1.00 -83.15 418.20 -0.87 -84.02 By element: Atomic # 1 Polarization: -167.64 SS G_CDS: -1.26 Total: -168.89 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 4.37 Total: 22.75 kcal Atomic # 7 Polarization: 46.64 SS G_CDS: -2.46 Total: 44.18 kcal Atomic # 8 Polarization: 28.38 SS G_CDS: -3.57 Total: 24.81 kcal Atomic # 14 Polarization: -8.92 SS G_CDS: 2.05 Total: -6.87 kcal Total: -83.15 -0.87 -84.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_12335836.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.336 kcal (2) G-P(sol) polarization free energy of solvation -83.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds