Wall clock time and date at job start Sun Mar 7 2021 09:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.46963 * 2 1 4 4 C 1.50702 * 109.47350 * 119.99878 * 2 1 3 5 5 C 1.38318 * 119.92414 * 245.00650 * 4 2 1 6 6 C 1.38465 * 120.28303 * 179.97438 * 5 4 2 7 7 Br 1.89103 * 119.93531 * 179.97438 * 6 5 4 8 8 C 1.38029 * 120.12477 * 359.97438 * 6 5 4 9 9 C 1.39585 * 119.84306 * 0.02562 * 8 6 5 10 10 C 1.47844 * 120.14052 * 179.97438 * 9 8 6 11 11 O 1.21553 * 119.99958 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99725 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99718 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46813 * 34.99540 * 13 12 10 15 15 C 1.53004 * 109.46989 * 154.99340 * 13 12 10 16 16 C 1.53001 * 109.46672 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47372 * 299.99924 * 16 15 13 18 18 H 1.08997 * 109.47700 * 300.00433 * 17 16 15 19 19 N 1.46904 * 109.47176 * 179.97438 * 17 16 15 20 20 H 1.00896 * 109.47773 * 300.00331 * 19 17 16 21 21 C 1.46938 * 109.47846 * 179.97438 * 19 17 16 22 22 C 1.53071 * 109.37482 * 180.02562 * 21 19 17 23 23 O 1.43028 * 109.25799 * 57.63234 * 22 21 19 24 24 C 1.43032 * 113.64876 * 302.09832 * 23 22 21 25 25 C 1.46942 * 109.47707 * 60.02046 * 19 17 16 26 26 C 1.53004 * 109.47160 * 60.00375 * 17 16 15 27 27 C 1.52993 * 109.46756 * 274.99538 * 13 12 10 28 28 C 1.37983 * 119.91952 * 64.99999 * 4 2 1 29 29 H 0.96701 * 114.00331 * 60.00261 * 1 2 3 30 30 H 1.08998 * 109.47191 * 240.00071 * 2 1 3 31 31 H 1.48499 * 110.00326 * 60.00052 * 3 2 1 32 32 H 1.48500 * 109.99985 * 181.31704 * 3 2 1 33 33 H 1.07997 * 119.85636 * 0.26994 * 5 4 2 34 34 H 1.08000 * 120.07878 * 179.97438 * 8 6 5 35 35 H 0.96996 * 120.00374 * 359.97438 * 12 10 9 36 36 H 1.08994 * 109.46996 * 299.99713 * 15 13 12 37 37 H 1.08997 * 109.46767 * 60.00230 * 15 13 12 38 38 H 1.08997 * 109.47061 * 60.00748 * 16 15 13 39 39 H 1.09001 * 109.46564 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.48881 * 299.96929 * 21 19 17 41 41 H 1.09004 * 109.48360 * 60.02510 * 21 19 17 42 42 H 1.09001 * 109.49968 * 297.69696 * 22 21 19 43 43 H 1.09001 * 109.50723 * 177.57223 * 22 21 19 44 44 H 1.09001 * 109.51223 * 297.97006 * 24 23 22 45 45 H 1.09005 * 109.50854 * 177.83413 * 24 23 22 46 46 H 1.09003 * 109.48717 * 299.98375 * 25 19 17 47 47 H 1.08999 * 109.48566 * 60.03671 * 25 19 17 48 48 H 1.09009 * 109.47122 * 59.99700 * 26 17 16 49 49 H 1.08996 * 109.47526 * 179.97438 * 26 17 16 50 50 H 1.09002 * 109.47461 * 299.99605 * 27 13 12 51 51 H 1.09001 * 109.47676 * 60.00179 * 27 13 12 52 52 H 1.08002 * 120.06203 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6389 -0.0102 2.1909 6 6 3.1035 -0.6554 3.3245 7 35 4.0704 0.3112 4.6309 8 6 2.8622 -2.0027 3.5028 9 6 2.1487 -2.7143 2.5370 10 6 1.8870 -4.1577 2.7210 11 8 1.2650 -4.7749 1.8785 12 7 2.3372 -4.7890 3.8234 13 6 2.0773 -6.2192 4.0060 14 1 2.1057 -6.7201 3.0383 15 6 3.1461 -6.8189 4.9221 16 6 2.8743 -8.3123 5.1133 17 6 1.4946 -8.5027 5.7465 18 1 1.4665 -8.0016 6.7140 19 7 1.2334 -9.9367 5.9294 20 1 1.2592 -10.4004 5.0337 21 6 -0.0914 -10.1197 6.5381 22 6 -0.3608 -11.6145 6.7283 23 8 0.6726 -12.1807 7.5389 24 6 1.9856 -12.0068 6.9989 25 6 2.2594 -10.5132 6.8093 26 6 0.4258 -7.9031 4.8304 27 6 0.6976 -6.4101 4.6388 28 6 1.6843 -2.0577 1.3964 29 1 -0.3934 0.4417 -0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5614 2.4679 1.2085 32 1 3.5345 1.7703 -0.0321 33 1 2.8257 1.0451 2.0582 34 1 3.2253 -2.5052 4.3871 35 1 2.8332 -4.2965 4.4959 36 1 4.1290 -6.6829 4.4712 37 1 3.1177 -6.3180 5.8898 38 1 2.9024 -8.8135 4.1458 39 1 3.6359 -8.7396 5.7656 40 1 -0.1190 -9.6197 7.5062 41 1 -0.8533 -9.6925 5.8860 42 1 -0.3732 -12.1084 5.7567 43 1 -1.3245 -11.7511 7.2190 44 1 2.0536 -12.5142 6.0366 45 1 2.7203 -12.4273 7.6856 46 1 3.2426 -10.3781 6.3586 47 1 2.2310 -10.0131 7.7774 48 1 0.4539 -8.4043 3.8627 49 1 -0.5572 -8.0391 5.2812 50 1 0.6692 -5.9092 5.6066 51 1 -0.0638 -5.9829 3.9862 52 1 1.1312 -2.6028 0.6458 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_12335870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:42 Heat of formation + Delta-G solvation = 30.374188 kcal Electronic energy + Delta-G solvation = -33178.010606 eV Core-core repulsion = 28694.714456 eV Total energy + Delta-G solvation = -4483.296150 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.111 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.39292 -41.75708 -40.37910 -39.32706 -37.74891 -37.63643 -35.13007 -33.83268 -33.30808 -33.28511 -31.79262 -30.71679 -30.61764 -28.23553 -27.09167 -26.09758 -25.56465 -23.69400 -23.54924 -23.21955 -22.82464 -21.58839 -21.28481 -19.09203 -18.89089 -18.52598 -18.24710 -17.89484 -17.80655 -17.73668 -16.99332 -16.80913 -16.53311 -16.32963 -16.29034 -16.09132 -15.54741 -15.37619 -15.26717 -15.00915 -14.94149 -14.51836 -14.34746 -14.25352 -14.17819 -13.92077 -13.91885 -13.68381 -13.31190 -12.96466 -12.93487 -12.82805 -12.77232 -12.61736 -12.51181 -12.31326 -12.23941 -12.01742 -11.89205 -11.72987 -11.67695 -11.48938 -11.26407 -11.00883 -10.60309 -10.40441 -10.19091 -10.06634 -5.04538 -0.70043 -0.31887 0.23733 0.63188 1.15839 1.37124 1.54228 1.81995 1.86886 2.31913 2.47352 2.54828 2.65461 2.94624 3.05321 3.13277 3.21019 3.35842 3.38935 3.54990 3.57504 3.65348 3.65993 3.71091 3.77918 3.83351 3.87386 3.88818 4.00388 4.04031 4.09500 4.10281 4.17724 4.21016 4.29622 4.33059 4.40957 4.47620 4.52892 4.56913 4.57321 4.65375 4.66197 4.74224 4.76372 4.80023 4.89389 4.91995 4.97847 5.00831 5.12663 5.18535 5.21356 5.37836 5.90380 6.24827 6.78038 6.93741 Molecular weight = 426.11amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.001584 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.246837 B =17667.732250 C =19419.563306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.075 4.075 3 Si 0.755 3.245 4 C -0.085 4.085 5 C -0.087 4.087 6 C -0.102 4.102 7 Br -0.031 7.031 8 C -0.041 4.041 9 C -0.136 4.136 10 C 0.568 3.432 11 O -0.563 6.563 12 N -0.710 5.710 13 C 0.133 3.867 14 H 0.076 0.924 15 C -0.122 4.122 16 C -0.135 4.135 17 C 0.045 3.955 18 H 0.157 0.843 19 N -0.369 5.369 20 H 0.434 0.566 21 C -0.036 4.036 22 C 0.029 3.971 23 O -0.401 6.401 24 C 0.028 3.972 25 C -0.035 4.035 26 C -0.135 4.135 27 C -0.129 4.129 28 C -0.026 4.026 29 H 0.407 0.593 30 H 0.103 0.897 31 H -0.291 1.291 32 H -0.283 1.283 33 H 0.126 0.874 34 H 0.174 0.826 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.165 0.835 47 H 0.144 0.856 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.086 0.914 51 H 0.048 0.952 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -26.075 9.316 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.186 4.186 3 Si 0.661 3.339 4 C -0.086 4.086 5 C -0.106 4.106 6 C -0.182 4.182 7 Br 0.054 6.946 8 C -0.061 4.061 9 C -0.140 4.140 10 C 0.355 3.645 11 O -0.442 6.442 12 N -0.362 5.362 13 C 0.029 3.971 14 H 0.095 0.905 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.057 4.057 18 H 0.175 0.825 19 N 0.052 4.948 20 H 0.272 0.728 21 C -0.157 4.157 22 C -0.048 4.048 23 O -0.320 6.320 24 C -0.049 4.049 25 C -0.157 4.157 26 C -0.173 4.173 27 C -0.168 4.168 28 C -0.045 4.045 29 H 0.259 0.741 30 H 0.120 0.880 31 H -0.219 1.219 32 H -0.210 1.210 33 H 0.143 0.857 34 H 0.191 0.809 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.105 0.895 45 H 0.144 0.856 46 H 0.183 0.817 47 H 0.162 0.838 48 H 0.111 0.889 49 H 0.126 0.874 50 H 0.105 0.895 51 H 0.067 0.933 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.475 -25.872 10.614 28.004 hybrid contribution 0.010 0.183 -0.615 0.642 sum -1.465 -25.689 9.999 27.605 Atomic orbital electron populations 1.86420 1.16661 1.82451 1.51684 1.24701 0.86358 1.10539 0.96959 0.94020 0.78056 0.76198 0.85600 1.19575 0.98681 0.94218 0.96120 1.21238 0.96854 0.99601 0.92939 1.21754 1.04191 0.96051 0.96174 1.96867 1.72190 1.74207 1.51310 1.21487 0.94462 0.91313 0.98852 1.20064 1.02874 0.94431 0.96627 1.17999 0.78544 0.85920 0.82047 1.90807 1.41618 1.67564 1.44260 1.45893 1.56932 1.11571 1.21794 1.21359 0.95901 0.79365 1.00469 0.90546 1.21740 0.98140 0.95612 1.00559 1.22071 0.94315 0.96916 1.04010 1.23414 0.98426 0.77977 1.05901 0.82510 1.45409 1.15041 1.15564 1.18783 0.72824 1.24558 0.84214 1.01205 1.05771 1.23292 0.93534 0.89716 0.98214 1.88324 1.15869 1.78902 1.48875 1.23318 0.85502 0.93135 1.02964 1.24588 0.94605 0.97031 0.99427 1.22015 0.99083 0.95229 1.00984 1.21823 0.96162 0.96793 1.02035 1.21331 0.93750 0.93052 0.96411 0.74107 0.87970 1.21859 1.20982 0.85671 0.80907 0.74827 0.90096 0.88599 0.88479 0.86190 0.83828 0.82387 0.89511 0.85751 0.89495 0.85561 0.81710 0.83778 0.88883 0.87381 0.89546 0.93290 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 7.99 12.81 -148.98 -1.91 6.09 16 2 C -0.08 1.11 2.79 71.24 0.20 1.31 16 3 Si 0.76 -10.99 29.84 68.60 2.05 -8.95 16 4 C -0.08 0.96 5.38 -19.91 -0.11 0.85 16 5 C -0.09 0.91 8.40 22.34 0.19 1.10 16 6 C -0.10 1.41 6.22 22.27 0.14 1.54 16 7 Br -0.03 0.42 33.69 -20.37 -0.69 -0.26 16 8 C -0.04 0.79 9.28 22.55 0.21 1.00 16 9 C -0.14 2.24 5.87 -20.09 -0.12 2.12 16 10 C 0.57 -10.74 7.74 86.79 0.67 -10.07 16 11 O -0.56 6.41 16.01 -3.88 -0.06 6.35 16 12 N -0.71 21.02 5.03 -445.40 -2.24 18.78 16 13 C 0.13 -4.86 2.45 44.99 0.11 -4.75 16 14 H 0.08 -2.43 7.58 -2.39 -0.02 -2.45 16 15 C -0.12 5.53 5.39 30.60 0.16 5.70 16 16 C -0.14 7.38 4.89 30.59 0.15 7.53 16 17 C 0.04 -2.60 1.62 44.91 0.07 -2.53 16 18 H 0.16 -9.51 8.14 -2.39 -0.02 -9.53 16 19 N -0.37 22.87 0.24 -870.58 -0.21 22.66 16 20 H 0.43 -28.41 8.32 -89.70 -0.75 -29.15 16 21 C -0.04 2.07 4.93 86.32 0.43 2.50 16 22 C 0.03 -1.44 6.96 72.01 0.50 -0.94 16 23 O -0.40 16.87 10.84 -148.98 -1.62 15.25 16 24 C 0.03 -1.38 6.96 71.99 0.50 -0.88 16 25 C -0.03 2.08 4.93 86.30 0.43 2.51 16 26 C -0.14 6.88 4.89 30.58 0.15 7.03 16 27 C -0.13 5.10 5.49 30.58 0.17 5.27 16 28 C -0.03 0.32 9.23 22.53 0.21 0.53 16 29 H 0.41 -9.76 8.74 -74.06 -0.65 -10.41 16 30 H 0.10 -1.94 7.96 -2.39 -0.02 -1.96 16 31 H -0.29 2.10 7.04 99.48 0.70 2.80 16 32 H -0.28 2.61 7.11 99.48 0.71 3.32 16 33 H 0.13 -1.15 4.85 -2.91 -0.01 -1.16 16 34 H 0.17 -4.77 6.41 -2.91 -0.02 -4.79 16 35 H 0.41 -14.15 6.64 -92.71 -0.62 -14.77 16 36 H 0.08 -3.36 8.14 -2.39 -0.02 -3.38 16 37 H 0.10 -4.53 8.14 -2.39 -0.02 -4.55 16 38 H 0.10 -5.28 8.14 -2.39 -0.02 -5.30 16 39 H 0.12 -7.01 6.29 -2.39 -0.02 -7.03 16 40 H 0.14 -8.37 8.14 -2.39 -0.02 -8.39 16 41 H 0.16 -9.60 6.15 -2.39 -0.01 -9.61 16 42 H 0.09 -4.45 8.14 -2.39 -0.02 -4.47 16 43 H 0.12 -5.78 8.14 -2.39 -0.02 -5.80 16 44 H 0.09 -4.53 8.14 -2.39 -0.02 -4.55 16 45 H 0.13 -6.01 8.14 -2.38 -0.02 -6.03 16 46 H 0.17 -10.47 6.15 -2.39 -0.01 -10.48 16 47 H 0.14 -8.59 8.14 -2.39 -0.02 -8.60 16 48 H 0.09 -4.69 8.14 -2.38 -0.02 -4.71 16 49 H 0.11 -5.76 6.28 -2.39 -0.02 -5.77 16 50 H 0.09 -3.54 8.14 -2.39 -0.02 -3.56 16 51 H 0.05 -1.45 8.14 -2.39 -0.02 -1.47 16 52 H 0.14 -1.61 7.65 -2.91 -0.02 -1.63 16 Total: 1.00 -82.09 414.91 -1.62 -83.71 By element: Atomic # 1 Polarization: -162.42 SS G_CDS: -1.01 Total: -163.43 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 4.06 Total: 19.80 kcal Atomic # 7 Polarization: 43.89 SS G_CDS: -2.45 Total: 41.44 kcal Atomic # 8 Polarization: 31.27 SS G_CDS: -3.59 Total: 27.69 kcal Atomic # 14 Polarization: -10.99 SS G_CDS: 2.05 Total: -8.95 kcal Atomic # 35 Polarization: 0.42 SS G_CDS: -0.69 Total: -0.26 kcal Total: -82.09 -1.62 -83.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_12335870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.089 kcal (2) G-P(sol) polarization free energy of solvation -82.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds