Wall clock time and date at job start Sun Mar 7 2021 09:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.46879 * 2 1 4 4 C 1.50700 * 109.46394 * 119.99559 * 2 1 3 5 5 C 1.38617 * 119.83959 * 194.99997 * 4 2 1 6 6 F 1.35102 * 119.91796 * 0.02562 * 5 4 2 7 7 C 1.38109 * 120.16960 * 180.02562 * 5 4 2 8 8 C 1.39625 * 119.84522 * 359.97438 * 7 5 4 9 9 C 1.47698 * 120.14999 * 180.02562 * 8 7 5 10 10 O 1.21568 * 119.99646 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00262 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00353 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46952 * 35.00586 * 12 11 9 14 14 C 1.53004 * 109.47495 * 155.00390 * 12 11 9 15 15 C 1.52996 * 109.47255 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47168 * 300.00071 * 15 14 12 17 17 H 1.09000 * 109.47048 * 299.99747 * 16 15 14 18 18 N 1.46896 * 109.47111 * 180.02562 * 16 15 14 19 19 H 1.00900 * 109.47840 * 299.98148 * 18 16 15 20 20 C 1.46946 * 109.48029 * 179.97438 * 18 16 15 21 21 C 1.53070 * 109.37660 * 179.97438 * 20 18 16 22 22 O 1.43032 * 109.24947 * 57.64661 * 21 20 18 23 23 C 1.43037 * 113.64947 * 302.09218 * 22 21 20 24 24 C 1.46945 * 109.48080 * 60.00071 * 18 16 15 25 25 C 1.52997 * 109.47286 * 60.00008 * 16 15 14 26 26 C 1.53001 * 109.47405 * 275.00753 * 12 11 9 27 27 C 1.39835 * 119.69256 * 0.02562 * 8 7 5 28 28 F 1.35100 * 120.08330 * 179.97438 * 27 8 7 29 29 C 1.38228 * 119.84816 * 15.00770 * 4 2 1 30 30 H 0.96697 * 114.00393 * 300.00174 * 1 2 3 31 31 H 1.08995 * 109.47177 * 239.99748 * 2 1 3 32 32 H 1.48500 * 109.99769 * 178.67597 * 3 2 1 33 33 H 1.48499 * 110.00425 * 299.99413 * 3 2 1 34 34 H 1.07993 * 120.07852 * 180.27848 * 7 5 4 35 35 H 0.97004 * 120.00093 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47049 * 300.00487 * 14 12 11 37 37 H 1.08999 * 109.46860 * 60.00140 * 14 12 11 38 38 H 1.08999 * 109.47429 * 60.00051 * 15 14 12 39 39 H 1.09001 * 109.46987 * 180.02562 * 15 14 12 40 40 H 1.08995 * 109.48380 * 299.96454 * 20 18 16 41 41 H 1.09002 * 109.48161 * 60.01661 * 20 18 16 42 42 H 1.09000 * 109.51079 * 297.71204 * 21 20 18 43 43 H 1.09002 * 109.50534 * 177.57670 * 21 20 18 44 44 H 1.08998 * 109.50348 * 297.96944 * 23 22 21 45 45 H 1.09003 * 109.53937 * 177.85985 * 23 22 21 46 46 H 1.09004 * 109.48365 * 299.97622 * 24 18 16 47 47 H 1.08994 * 109.48643 * 60.03878 * 24 18 16 48 48 H 1.09000 * 109.47291 * 59.99887 * 25 16 15 49 49 H 1.08993 * 109.47192 * 179.97438 * 25 16 15 50 50 H 1.09000 * 109.47048 * 299.99308 * 26 12 11 51 51 H 1.09001 * 109.47056 * 59.99739 * 26 12 11 52 52 H 1.07997 * 119.92329 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 3.2561 -0.5725 1.6142 6 9 4.0921 0.1981 0.8845 7 6 3.7236 -1.2208 2.7404 8 6 2.8582 -2.0164 3.4938 9 6 3.3509 -2.7123 4.6998 10 8 2.5951 -3.4047 5.3534 11 7 4.6386 -2.5806 5.0750 12 6 5.1272 -3.2705 6.2714 13 1 4.6254 -4.2334 6.3660 14 6 6.6365 -3.4915 6.1522 15 6 7.1467 -4.2125 7.4015 16 6 6.8521 -3.3608 8.6379 17 1 7.3541 -2.3979 8.5437 18 7 7.3424 -4.0528 9.8373 19 1 6.8780 -4.9443 9.9249 20 6 7.0602 -3.2347 11.0249 21 6 7.5715 -3.9581 12.2732 22 8 8.9719 -4.2118 12.1308 23 6 9.3001 -4.9860 10.9738 24 6 8.7920 -4.2647 9.7226 25 6 5.3429 -3.1398 8.7572 26 6 4.8327 -2.4183 7.5076 27 6 1.5229 -2.1512 3.1012 28 9 0.6788 -2.9194 3.8241 29 6 1.0686 -1.4964 1.9713 30 1 -0.3934 0.4417 0.7650 31 1 1.7924 -0.5138 -0.8899 32 1 3.5345 1.7703 0.0322 33 1 1.5616 2.4679 -1.2085 34 1 4.7550 -1.1087 3.0405 35 1 5.2418 -2.0285 4.5532 36 1 6.8463 -4.0987 5.2715 37 1 7.1384 -2.5286 6.0576 38 1 6.6448 -5.1755 7.4957 39 1 8.2219 -4.3696 7.3167 40 1 7.5625 -2.2719 10.9308 41 1 5.9850 -3.0773 11.1107 42 1 7.0404 -4.9029 12.3895 43 1 7.4019 -3.3340 13.1506 44 1 8.8282 -5.9659 11.0458 45 1 10.3816 -5.1066 10.9105 46 1 9.0021 -4.8719 8.8421 47 1 9.2939 -3.3017 9.6290 48 1 4.8409 -4.1027 8.8514 49 1 5.1330 -2.5334 9.6383 50 1 5.3347 -1.4554 7.4130 51 1 3.7575 -2.2609 7.5926 52 1 0.0377 -1.5999 1.6664 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_12360598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:56 Heat of formation + Delta-G solvation = -51.138586 kcal Electronic energy + Delta-G solvation = -36399.199942 eV Core-core repulsion = 31313.279185 eV Total energy + Delta-G solvation = -5085.920757 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.46326 -50.12722 -43.37223 -41.47758 -40.18653 -39.33117 -37.80623 -37.56545 -35.05984 -33.26637 -33.14315 -31.76564 -31.46575 -30.67948 -28.46314 -27.57013 -26.08151 -24.38198 -24.23418 -23.62410 -23.50289 -23.04456 -21.76733 -21.44577 -19.66620 -19.13778 -18.87390 -18.60579 -18.23842 -17.89216 -17.76855 -17.53873 -17.33629 -17.04935 -16.97507 -16.76100 -16.52467 -16.13084 -16.08431 -16.04367 -15.83824 -15.78205 -15.39429 -15.26982 -15.03898 -14.55703 -14.30761 -14.22230 -14.18005 -13.91480 -13.90174 -13.74872 -13.32891 -13.27090 -12.99748 -12.94390 -12.90175 -12.76150 -12.61414 -12.48922 -12.28699 -11.87972 -11.70566 -11.62118 -11.45784 -11.17167 -11.03380 -10.99821 -10.32757 -10.19004 -9.74449 -5.05216 -0.80631 -0.30505 0.64956 1.10065 1.44740 1.60170 1.83633 1.96464 2.26629 2.49072 2.56303 2.66678 2.78166 2.82374 2.96364 3.10768 3.14554 3.16530 3.37187 3.40650 3.48572 3.49984 3.65558 3.68786 3.78251 3.80390 3.88137 3.90841 4.06442 4.11061 4.12205 4.15916 4.22501 4.29207 4.32142 4.34418 4.37176 4.49466 4.54261 4.58866 4.61200 4.66408 4.68096 4.71430 4.76806 4.78651 4.81962 4.91602 5.00585 5.03391 5.15170 5.21975 5.37189 5.41025 5.91324 6.27952 6.58679 6.97876 Molecular weight = 384.18amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.001713 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.715437 B =16345.091235 C =17017.731170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.764 3.236 4 C -0.085 4.085 5 C 0.070 3.930 6 F -0.123 7.123 7 C -0.064 4.064 8 C -0.160 4.160 9 C 0.563 3.437 10 O -0.560 6.560 11 N -0.707 5.707 12 C 0.133 3.867 13 H 0.072 0.928 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.045 3.955 17 H 0.159 0.841 18 N -0.370 5.370 19 H 0.433 0.567 20 C -0.035 4.035 21 C 0.029 3.971 22 O -0.401 6.401 23 C 0.027 3.973 24 C -0.034 4.034 25 C -0.136 4.136 26 C -0.128 4.128 27 C 0.137 3.863 28 F -0.128 7.128 29 C -0.122 4.122 30 H 0.400 0.600 31 H 0.125 0.875 32 H -0.247 1.247 33 H -0.311 1.311 34 H 0.188 0.812 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.165 0.835 47 H 0.145 0.855 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.090 0.910 51 H 0.048 0.952 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.092 -4.923 21.402 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.184 4.184 3 Si 0.668 3.332 4 C -0.087 4.087 5 C 0.050 3.950 6 F -0.101 7.101 7 C -0.083 4.083 8 C -0.165 4.165 9 C 0.349 3.651 10 O -0.439 6.439 11 N -0.359 5.359 12 C 0.029 3.971 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.174 4.174 16 C -0.057 4.057 17 H 0.177 0.823 18 N 0.051 4.949 19 H 0.271 0.729 20 C -0.157 4.157 21 C -0.048 4.048 22 O -0.320 6.320 23 C -0.050 4.050 24 C -0.156 4.156 25 C -0.174 4.174 26 C -0.167 4.167 27 C 0.117 3.883 28 F -0.106 7.106 29 C -0.140 4.140 30 H 0.251 0.749 31 H 0.142 0.858 32 H -0.172 1.172 33 H -0.240 1.240 34 H 0.205 0.795 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.176 0.824 42 H 0.104 0.896 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.144 0.856 46 H 0.182 0.818 47 H 0.163 0.837 48 H 0.108 0.892 49 H 0.127 0.873 50 H 0.109 0.891 51 H 0.067 0.933 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 18.419 -4.854 21.051 28.390 hybrid contribution -0.737 -0.800 -1.014 1.487 sum 17.683 -5.654 20.037 27.315 Atomic orbital electron populations 1.86518 1.16454 1.81792 1.51007 1.25187 0.86001 1.10739 0.96493 0.94409 0.79032 0.73556 0.86245 1.20445 0.92500 0.97706 0.98031 1.17371 0.87745 0.96521 0.93354 1.91608 1.70859 1.71753 1.75888 1.21306 1.01599 0.93561 0.91878 1.19879 0.93037 1.04174 0.99366 1.17914 0.83273 0.80385 0.83491 1.90876 1.56802 1.40637 1.55573 1.45826 1.09378 1.51192 1.29552 1.21341 0.96118 0.95998 0.83664 0.90974 1.21737 0.91558 1.03510 0.99167 1.22077 1.05160 0.99235 0.90929 1.23424 0.97991 1.00827 0.83444 0.82297 1.45424 1.15981 1.18961 1.14509 0.72904 1.24558 1.09099 0.98308 0.83736 1.23295 0.81554 1.01992 0.97955 1.88324 1.24519 1.73447 1.45672 1.23328 1.04899 0.94401 0.82324 1.24600 0.77626 1.09356 1.04020 1.22031 0.91833 1.03903 0.99626 1.21835 1.01640 0.99999 0.93222 1.17951 0.87363 0.91948 0.91051 1.91595 1.70064 1.72483 1.76461 1.20878 1.02929 0.96961 0.93268 0.74930 0.85774 1.17199 1.24002 0.79453 0.74562 0.90192 0.88267 0.88740 0.86206 0.83690 0.82396 0.89616 0.85732 0.89603 0.85576 0.81761 0.83658 0.89172 0.87329 0.89130 0.93309 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 8.75 11.63 -148.98 -1.73 7.02 16 2 C -0.08 1.27 2.96 71.24 0.21 1.48 16 3 Si 0.76 -12.72 30.81 68.60 2.11 -10.61 16 4 C -0.09 1.57 5.14 -19.78 -0.10 1.47 16 5 C 0.07 -1.40 6.65 22.33 0.15 -1.25 16 6 F -0.12 2.13 12.80 44.97 0.58 2.70 16 7 C -0.06 1.59 9.52 22.57 0.21 1.81 16 8 C -0.16 3.15 5.88 -20.06 -0.12 3.03 16 9 C 0.56 -11.37 7.73 86.74 0.67 -10.70 16 10 O -0.56 6.16 15.00 -3.93 -0.06 6.11 16 11 N -0.71 22.30 5.03 -445.56 -2.24 20.06 16 12 C 0.13 -5.00 2.45 44.99 0.11 -4.88 16 13 H 0.07 -2.31 7.58 -2.39 -0.02 -2.33 16 14 C -0.12 5.64 5.39 30.59 0.16 5.80 16 15 C -0.14 7.51 4.90 30.59 0.15 7.66 16 16 C 0.04 -2.65 1.61 44.92 0.07 -2.58 16 17 H 0.16 -9.84 8.14 -2.39 -0.02 -9.86 16 18 N -0.37 23.11 0.24 -870.43 -0.21 22.90 16 19 H 0.43 -28.46 8.32 -89.69 -0.75 -29.21 16 20 C -0.04 2.07 4.93 86.32 0.43 2.49 16 21 C 0.03 -1.44 6.96 72.01 0.50 -0.93 16 22 O -0.40 17.01 10.84 -148.98 -1.62 15.39 16 23 C 0.03 -1.37 6.96 72.01 0.50 -0.87 16 24 C -0.03 2.07 4.94 86.33 0.43 2.50 16 25 C -0.14 7.02 4.90 30.61 0.15 7.17 16 26 C -0.13 5.22 5.50 30.61 0.17 5.39 16 27 C 0.14 -2.01 7.28 22.66 0.17 -1.85 16 28 F -0.13 1.04 15.55 44.97 0.70 1.74 16 29 C -0.12 2.11 9.20 22.27 0.20 2.31 16 30 H 0.40 -9.75 8.42 -74.06 -0.62 -10.38 16 31 H 0.13 -1.95 7.96 -2.39 -0.02 -1.97 16 32 H -0.25 3.32 5.26 99.48 0.52 3.84 16 33 H -0.31 2.17 7.11 99.48 0.71 2.87 16 34 H 0.19 -6.30 6.40 -2.91 -0.02 -6.32 16 35 H 0.42 -15.50 6.64 -92.71 -0.62 -16.12 16 36 H 0.08 -3.40 8.14 -2.39 -0.02 -3.42 16 37 H 0.10 -4.86 8.14 -2.39 -0.02 -4.88 16 38 H 0.09 -5.15 8.14 -2.39 -0.02 -5.17 16 39 H 0.12 -7.08 6.28 -2.39 -0.01 -7.09 16 40 H 0.15 -8.57 8.14 -2.39 -0.02 -8.59 16 41 H 0.16 -9.68 6.15 -2.39 -0.01 -9.70 16 42 H 0.09 -4.41 8.14 -2.39 -0.02 -4.43 16 43 H 0.12 -5.84 8.14 -2.39 -0.02 -5.86 16 44 H 0.09 -4.48 8.14 -2.39 -0.02 -4.50 16 45 H 0.13 -6.04 8.14 -2.39 -0.02 -6.06 16 46 H 0.16 -10.50 6.15 -2.38 -0.01 -10.52 16 47 H 0.15 -8.77 8.14 -2.39 -0.02 -8.79 16 48 H 0.09 -4.56 8.14 -2.39 -0.02 -4.58 16 49 H 0.11 -5.88 6.28 -2.39 -0.02 -5.90 16 50 H 0.09 -3.90 8.14 -2.39 -0.02 -3.92 16 51 H 0.05 -1.50 8.14 -2.39 -0.02 -1.52 16 52 H 0.17 -3.07 7.06 -2.91 -0.02 -3.09 16 Total: 1.00 -84.58 400.27 0.45 -84.13 By element: Atomic # 1 Polarization: -166.34 SS G_CDS: -1.14 Total: -167.49 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 4.07 Total: 18.05 kcal Atomic # 7 Polarization: 45.41 SS G_CDS: -2.45 Total: 42.96 kcal Atomic # 8 Polarization: 31.92 SS G_CDS: -3.41 Total: 28.52 kcal Atomic # 9 Polarization: 3.17 SS G_CDS: 1.27 Total: 4.45 kcal Atomic # 14 Polarization: -12.72 SS G_CDS: 2.11 Total: -10.61 kcal Total: -84.58 0.45 -84.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_12360598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.990 kcal (2) G-P(sol) polarization free energy of solvation -84.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds