Wall clock time and date at job start Sun Mar 7 2021 09:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47353 * 2 1 4 4 C 1.50697 * 109.47286 * 120.00229 * 2 1 3 5 5 C 1.37819 * 119.94107 * 14.97668 * 4 2 1 6 6 C 1.39671 * 119.88077 * 179.74817 * 5 4 2 7 7 C 1.47727 * 120.11352 * 180.27177 * 6 5 4 8 8 O 1.21565 * 120.00686 * 0.27896 * 7 6 5 9 9 N 1.34779 * 119.99548 * 180.27246 * 7 6 5 10 10 C 1.46495 * 120.00314 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47189 * 34.99918 * 10 9 7 12 12 C 1.52994 * 109.47433 * 154.99909 * 10 9 7 13 13 C 1.53009 * 109.47008 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47292 * 300.00135 * 13 12 10 15 15 H 1.08998 * 109.47449 * 299.99919 * 14 13 12 16 16 N 1.46902 * 109.46880 * 179.97438 * 14 13 12 17 17 H 1.00892 * 109.48564 * 300.00424 * 16 14 13 18 18 C 1.46936 * 109.47746 * 179.97438 * 16 14 13 19 19 C 1.53077 * 109.37654 * 180.02562 * 18 16 14 20 20 O 1.43029 * 109.25449 * 57.63444 * 19 18 16 21 21 C 1.43036 * 113.64992 * 302.09932 * 20 19 18 22 22 C 1.46945 * 109.47417 * 60.02271 * 16 14 13 23 23 C 1.53003 * 109.47044 * 59.99983 * 14 13 12 24 24 C 1.53001 * 109.47423 * 299.99869 * 23 14 13 25 25 C 1.39624 * 119.76419 * 0.55028 * 6 5 4 26 26 C 1.37863 * 119.88068 * 359.44949 * 25 6 5 27 27 C 1.38633 * 120.11623 * 0.27337 * 26 25 6 28 28 F 1.35101 * 119.88256 * 179.97438 * 27 26 25 29 29 H 0.96701 * 113.99876 * 300.00108 * 1 2 3 30 30 H 1.09004 * 109.47495 * 240.00103 * 2 1 3 31 31 H 1.48503 * 110.00099 * 178.67987 * 3 2 1 32 32 H 1.48501 * 110.00220 * 300.00253 * 3 2 1 33 33 H 1.08002 * 120.05553 * 359.97438 * 5 4 2 34 34 H 0.97005 * 120.00118 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47301 * 300.00284 * 12 10 9 36 36 H 1.08998 * 109.46971 * 60.00253 * 12 10 9 37 37 H 1.08998 * 109.46808 * 60.00447 * 13 12 10 38 38 H 1.08998 * 109.46922 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.49126 * 299.97215 * 18 16 14 40 40 H 1.09002 * 109.48480 * 60.02492 * 18 16 14 41 41 H 1.08997 * 109.49691 * 297.70015 * 19 18 16 42 42 H 1.09000 * 109.54418 * 177.59124 * 19 18 16 43 43 H 1.09005 * 109.50795 * 297.97453 * 21 20 19 44 44 H 1.09000 * 109.54309 * 177.86538 * 21 20 19 45 45 H 1.08994 * 109.48482 * 299.97863 * 22 16 14 46 46 H 1.09004 * 109.48556 * 60.03553 * 22 16 14 47 47 H 1.09005 * 109.47004 * 60.00097 * 23 14 13 48 48 H 1.08997 * 109.47140 * 179.97438 * 23 14 13 49 49 H 1.08993 * 109.46963 * 300.00396 * 24 23 14 50 50 H 1.08994 * 109.47330 * 180.02562 * 24 23 14 51 51 H 1.08002 * 120.06329 * 179.73186 * 25 6 5 52 52 H 1.07999 * 119.94211 * 180.25876 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.0730 -1.4943 1.9708 6 6 1.5412 -2.1564 3.1079 7 6 0.6270 -3.0027 3.9019 8 8 -0.5337 -3.1280 3.5631 9 7 1.0800 -3.6362 5.0019 10 6 0.1738 -4.4760 5.7891 11 1 -0.5319 -4.9726 5.1231 12 6 0.9841 -5.5277 6.5493 13 6 0.0376 -6.4043 7.3719 14 6 -0.7284 -5.5321 8.3686 15 1 -0.0226 -5.0355 9.0343 16 7 -1.6376 -6.3738 9.1579 17 1 -2.2911 -6.8333 8.5416 18 6 -2.3730 -5.5365 10.1156 19 6 -3.3191 -6.4157 10.9372 20 8 -2.5619 -7.4317 11.6007 21 6 -1.8084 -8.2595 10.7102 22 6 -0.8598 -7.3840 9.8885 23 6 -1.5388 -4.4804 7.6083 24 6 -0.5924 -3.6037 6.7857 25 6 2.8748 -2.0109 3.4949 26 6 3.7250 -1.2243 2.7471 27 6 3.2565 -0.5740 1.6160 28 9 4.0936 0.1960 0.8870 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 -0.8900 31 1 3.5347 1.7702 0.0321 32 1 1.5615 2.4679 -1.2085 33 1 0.0410 -1.5993 1.6700 34 1 2.0062 -3.5361 5.2725 35 1 1.5302 -6.1487 5.8393 36 1 1.6897 -5.0310 7.2153 37 1 -0.6683 -6.9009 6.7062 38 1 0.6149 -7.1538 7.9132 39 1 -1.6672 -5.0408 10.7821 40 1 -2.9504 -4.7868 9.5746 41 1 -4.0503 -6.8802 10.2757 42 1 -3.8347 -5.8040 11.6775 43 1 -2.4881 -8.7872 10.0410 44 1 -1.2302 -8.9823 11.2858 45 1 -0.3140 -8.0057 9.1789 46 1 -0.1545 -6.8877 10.5551 47 1 -2.2448 -4.9771 6.9425 48 1 -2.0849 -3.8593 8.3183 49 1 0.1135 -3.1072 7.4514 50 1 -1.1696 -2.8542 6.2445 51 1 3.2409 -2.5172 4.3758 52 1 4.7578 -1.1144 3.0432 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_12496548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:04 Heat of formation + Delta-G solvation = -11.159049 kcal Electronic energy + Delta-G solvation = -33625.648600 eV Core-core repulsion = 29010.915462 eV Total energy + Delta-G solvation = -4614.733139 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.191 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.45279 -43.35812 -41.51671 -40.09270 -39.22655 -37.79926 -37.56811 -34.98094 -33.25360 -32.84833 -32.08138 -31.74240 -30.52085 -28.18310 -27.12899 -26.06647 -25.15955 -23.65421 -23.50686 -23.27100 -23.14571 -21.51860 -21.27630 -19.37299 -18.91780 -18.79350 -18.30965 -18.02125 -17.77595 -17.73090 -17.22259 -17.11318 -16.96812 -16.55284 -16.19198 -16.14931 -16.02183 -15.85534 -15.48815 -15.25822 -15.17575 -15.02520 -14.71819 -14.33133 -14.17780 -14.04041 -13.90890 -13.88870 -13.77956 -13.44132 -13.23390 -12.92236 -12.86529 -12.83021 -12.74893 -12.52663 -12.39672 -12.25701 -11.86842 -11.67134 -11.49553 -11.43081 -11.17351 -10.98916 -10.95217 -10.24650 -10.05623 -9.73793 -5.11960 -0.53194 -0.00047 0.66525 1.15810 1.55074 1.58995 1.91579 2.00795 2.50520 2.56940 2.58175 2.67960 2.97852 2.98401 3.15872 3.21948 3.29393 3.39355 3.42966 3.55584 3.65493 3.69099 3.72639 3.81279 3.89468 3.93261 3.96659 4.06305 4.09410 4.13044 4.14520 4.25200 4.31027 4.34799 4.36245 4.53010 4.55349 4.56578 4.60806 4.67336 4.69753 4.77081 4.80078 4.83799 4.89141 4.93983 4.99449 5.02880 5.04784 5.06691 5.21598 5.26046 5.45930 5.58991 5.92277 6.41237 6.56921 7.10311 Molecular weight = 366.19amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.001750 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.754541 B =15997.152852 C =16533.882453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.067 4.067 3 Si 0.758 3.242 4 C -0.159 4.159 5 C -0.029 4.029 6 C -0.154 4.154 7 C 0.565 3.435 8 O -0.572 6.572 9 N -0.710 5.710 10 C 0.133 3.867 11 H 0.071 0.929 12 C -0.121 4.121 13 C -0.137 4.137 14 C 0.045 3.955 15 H 0.159 0.841 16 N -0.370 5.370 17 H 0.433 0.567 18 C -0.035 4.035 19 C 0.029 3.971 20 O -0.401 6.401 21 C 0.027 3.973 22 C -0.034 4.034 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.040 4.040 26 C -0.150 4.150 27 C 0.100 3.900 28 F -0.135 7.135 29 H 0.397 0.603 30 H 0.112 0.888 31 H -0.259 1.259 32 H -0.310 1.310 33 H 0.143 0.857 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.165 0.835 46 H 0.145 0.855 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.049 0.951 51 H 0.181 0.819 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -15.468 25.836 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.177 4.177 3 Si 0.663 3.337 4 C -0.160 4.160 5 C -0.048 4.048 6 C -0.157 4.157 7 C 0.353 3.647 8 O -0.452 6.452 9 N -0.362 5.362 10 C 0.029 3.971 11 H 0.089 0.911 12 C -0.160 4.160 13 C -0.174 4.174 14 C -0.057 4.057 15 H 0.177 0.823 16 N 0.051 4.949 17 H 0.271 0.729 18 C -0.157 4.157 19 C -0.048 4.048 20 O -0.320 6.320 21 C -0.050 4.050 22 C -0.156 4.156 23 C -0.174 4.174 24 C -0.166 4.166 25 C -0.059 4.059 26 C -0.168 4.168 27 C 0.081 3.919 28 F -0.114 7.114 29 H 0.248 0.752 30 H 0.129 0.871 31 H -0.185 1.185 32 H -0.239 1.239 33 H 0.161 0.839 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.144 0.856 45 H 0.182 0.818 46 H 0.163 0.837 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.108 0.892 50 H 0.068 0.932 51 H 0.198 0.802 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.340 -15.183 25.014 29.745 hybrid contribution 0.298 -0.113 -1.548 1.580 sum -5.042 -15.296 23.467 28.462 Atomic orbital electron populations 1.86490 1.16643 1.81807 1.50820 1.24941 0.85703 1.10187 0.96871 0.94563 0.78710 0.74509 0.85891 1.20251 0.93043 1.02769 0.99976 1.20915 1.00415 0.91549 0.91951 1.20056 0.95285 1.02310 0.98052 1.18156 0.86552 0.79253 0.80779 1.90812 1.19508 1.64041 1.70804 1.45847 1.15476 1.48799 1.26106 1.21298 0.92165 0.91181 0.92469 0.91122 1.21730 0.98220 0.96485 0.99525 1.22076 0.99673 0.98076 0.97620 1.23427 0.93356 0.92901 0.95979 0.82323 1.45424 1.17146 1.16037 1.16270 0.72915 1.24554 1.00238 0.96316 0.94579 1.23293 0.93004 0.89921 0.98594 1.88323 1.62877 1.46302 1.34477 1.23314 0.94411 0.93013 0.94227 1.24579 0.97216 0.93239 1.00560 1.22031 0.98240 0.97114 1.00051 1.21819 0.98946 0.98175 0.97691 1.21507 0.90426 0.94826 0.99102 1.21435 1.03050 0.98417 0.93895 1.18142 0.87502 0.93736 0.92562 1.91561 1.71367 1.72081 1.76374 0.75250 0.87066 1.18458 1.23869 0.83911 0.74567 0.90268 0.88312 0.88805 0.86303 0.83700 0.82360 0.89638 0.85743 0.89624 0.85587 0.81777 0.83660 0.89200 0.87377 0.89238 0.93183 0.80231 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 6.67 11.64 -148.98 -1.73 4.94 16 2 C -0.07 0.82 2.96 71.23 0.21 1.03 16 3 Si 0.76 -8.93 30.81 68.60 2.11 -6.82 16 4 C -0.16 2.33 5.13 -19.86 -0.10 2.23 16 5 C -0.03 0.47 8.78 22.52 0.20 0.67 16 6 C -0.15 3.24 5.87 -20.09 -0.12 3.12 16 7 C 0.56 -12.41 7.73 86.75 0.67 -11.74 16 8 O -0.57 7.58 16.01 -3.92 -0.06 7.51 16 9 N -0.71 23.27 5.03 -445.52 -2.24 21.03 16 10 C 0.13 -5.12 2.45 44.99 0.11 -5.01 16 11 H 0.07 -2.31 7.58 -2.38 -0.02 -2.33 16 12 C -0.12 5.70 5.39 30.60 0.16 5.87 16 13 C -0.14 7.59 4.89 30.60 0.15 7.74 16 14 C 0.05 -2.69 1.62 44.91 0.07 -2.61 16 15 H 0.16 -9.89 8.14 -2.39 -0.02 -9.91 16 16 N -0.37 23.24 0.24 -870.56 -0.21 23.02 16 17 H 0.43 -28.59 8.32 -89.70 -0.75 -29.34 16 18 C -0.04 2.07 4.93 86.32 0.43 2.50 16 19 C 0.03 -1.43 6.96 72.01 0.50 -0.93 16 20 O -0.40 17.11 10.84 -148.98 -1.62 15.49 16 21 C 0.03 -1.37 6.96 71.99 0.50 -0.87 16 22 C -0.03 2.07 4.93 86.30 0.43 2.50 16 23 C -0.14 7.13 4.90 30.60 0.15 7.28 16 24 C -0.13 5.30 5.49 30.60 0.17 5.47 16 25 C -0.04 1.06 9.54 22.52 0.21 1.28 16 26 C -0.15 3.26 10.01 22.28 0.22 3.48 16 27 C 0.10 -1.51 6.67 22.47 0.15 -1.36 16 28 F -0.14 1.34 12.82 44.97 0.58 1.92 16 29 H 0.40 -8.18 8.43 -74.06 -0.62 -8.81 16 30 H 0.11 -1.14 7.96 -2.39 -0.02 -1.16 16 31 H -0.26 1.79 5.27 99.48 0.52 2.31 16 32 H -0.31 0.92 7.11 99.48 0.71 1.63 16 33 H 0.14 -1.99 6.66 -2.91 -0.02 -2.01 16 34 H 0.42 -16.01 6.63 -92.70 -0.61 -16.63 16 35 H 0.08 -3.40 8.14 -2.39 -0.02 -3.42 16 36 H 0.10 -4.90 8.14 -2.39 -0.02 -4.92 16 37 H 0.09 -5.15 8.14 -2.39 -0.02 -5.17 16 38 H 0.12 -7.06 6.29 -2.39 -0.02 -7.07 16 39 H 0.14 -8.61 8.14 -2.39 -0.02 -8.63 16 40 H 0.16 -9.77 6.15 -2.39 -0.01 -9.78 16 41 H 0.09 -4.42 8.14 -2.39 -0.02 -4.44 16 42 H 0.12 -5.86 8.14 -2.39 -0.02 -5.88 16 43 H 0.09 -4.49 8.14 -2.38 -0.02 -4.51 16 44 H 0.13 -6.06 8.14 -2.39 -0.02 -6.08 16 45 H 0.16 -10.54 6.15 -2.39 -0.01 -10.55 16 46 H 0.15 -8.81 8.14 -2.39 -0.02 -8.83 16 47 H 0.09 -4.60 8.14 -2.38 -0.02 -4.62 16 48 H 0.11 -5.92 6.28 -2.39 -0.02 -5.93 16 49 H 0.09 -3.92 8.14 -2.39 -0.02 -3.94 16 50 H 0.05 -1.60 8.14 -2.39 -0.02 -1.62 16 51 H 0.18 -6.49 6.40 -2.91 -0.02 -6.51 16 52 H 0.17 -4.29 8.06 -2.91 -0.02 -4.32 16 Total: 1.00 -84.50 395.74 -0.22 -84.72 By element: Atomic # 1 Polarization: -171.30 SS G_CDS: -1.16 Total: -172.46 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 4.12 Total: 20.64 kcal Atomic # 7 Polarization: 46.51 SS G_CDS: -2.45 Total: 44.06 kcal Atomic # 8 Polarization: 31.35 SS G_CDS: -3.41 Total: 27.94 kcal Atomic # 9 Polarization: 1.34 SS G_CDS: 0.58 Total: 1.92 kcal Atomic # 14 Polarization: -8.93 SS G_CDS: 2.11 Total: -6.82 kcal Total: -84.50 -0.22 -84.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_12496548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.561 kcal (2) G-P(sol) polarization free energy of solvation -84.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds