Wall clock time and date at job start Sun Mar 7 2021 09:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34657 * 124.85382 * 2 1 4 4 C 1.36776 * 108.39725 * 179.97438 * 3 2 1 5 5 C 1.47265 * 126.94159 * 179.97438 * 4 3 2 6 6 O 1.21624 * 120.00271 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99831 * 0.02700 * 5 4 3 8 8 C 1.46498 * 119.99653 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47243 * 35.00630 * 8 7 5 10 10 C 1.53008 * 109.46907 * 155.00102 * 8 7 5 11 11 C 1.52994 * 109.47202 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47253 * 300.00029 * 11 10 8 13 13 H 1.09007 * 109.46460 * 300.00120 * 12 11 10 14 14 N 1.46891 * 109.47317 * 180.02562 * 12 11 10 15 15 H 1.00904 * 109.48250 * 299.98293 * 14 12 11 16 16 C 1.46939 * 109.47899 * 59.99669 * 14 12 11 17 17 C 1.53077 * 109.37652 * 180.02562 * 16 14 12 18 18 O 1.43035 * 109.24703 * 302.35821 * 17 16 14 19 19 C 1.43032 * 113.65238 * 57.90761 * 18 17 16 20 20 C 1.46942 * 109.47818 * 179.97438 * 14 12 11 21 21 C 1.52995 * 109.46835 * 59.99877 * 12 11 10 22 22 C 1.52996 * 109.47327 * 274.99956 * 8 7 5 23 23 C 1.46682 * 106.11516 * 0.22730 * 4 3 2 24 24 C 1.34486 * 106.33190 * 359.62145 * 23 4 3 25 25 C 1.50705 * 125.57010 * 180.15886 * 24 23 4 26 26 O 1.42903 * 109.46775 * 150.25424 * 25 24 23 27 27 Si 1.86301 * 109.46950 * 30.25958 * 25 24 23 28 28 H 1.08997 * 109.47000 * 90.02462 * 1 2 3 29 29 H 1.08996 * 109.46864 * 210.02761 * 1 2 3 30 30 H 1.08999 * 109.46898 * 330.02832 * 1 2 3 31 31 H 1.07997 * 125.80326 * 359.95286 * 3 2 1 32 32 H 0.96997 * 119.99767 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47004 * 59.99767 * 10 8 7 34 34 H 1.09001 * 109.46962 * 300.00333 * 10 8 7 35 35 H 1.09004 * 109.46982 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.46963 * 59.99991 * 11 10 8 37 37 H 1.08999 * 109.48960 * 60.04470 * 16 14 12 38 38 H 1.08998 * 109.50449 * 299.98655 * 16 14 12 39 39 H 1.09004 * 109.51044 * 182.42998 * 17 16 14 40 40 H 1.08998 * 109.50996 * 62.29044 * 17 16 14 41 41 H 1.08993 * 109.51011 * 62.02512 * 19 18 17 42 42 H 1.09001 * 109.50987 * 182.16173 * 19 18 17 43 43 H 1.08994 * 109.48667 * 299.95790 * 20 14 12 44 44 H 1.08992 * 109.48673 * 60.02134 * 20 14 12 45 45 H 1.08999 * 109.47541 * 60.00555 * 21 12 11 46 46 H 1.09001 * 109.46740 * 180.02562 * 21 12 11 47 47 H 1.09002 * 109.47452 * 300.00019 * 22 8 7 48 48 H 1.08995 * 109.47402 * 60.00378 * 22 8 7 49 49 H 1.07999 * 126.83159 * 179.75000 * 23 4 3 50 50 H 1.08997 * 109.47674 * 270.25774 * 25 24 23 51 51 H 0.96705 * 113.99665 * 180.02562 * 26 25 24 52 52 H 1.48502 * 109.99797 * 298.67492 * 27 25 24 53 53 H 1.48493 * 110.00268 * 59.99763 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5463 0.7175 0.0006 5 6 4.7285 1.5956 0.0003 6 8 5.8447 1.1127 0.0004 7 7 4.5735 2.9345 -0.0001 8 6 5.7496 3.8079 0.0001 9 1 6.5434 3.3487 -0.5890 10 6 5.3797 5.1615 -0.6100 11 6 6.6081 6.0735 -0.6104 12 6 7.0926 6.2771 0.8266 13 1 6.2990 6.7366 1.4158 14 7 8.2716 7.1533 0.8263 15 1 9.0066 6.7283 0.2810 16 6 7.9160 8.4531 0.2405 17 6 9.1463 9.3639 0.2408 18 8 9.6280 9.5053 1.5802 19 6 9.9655 8.2627 2.2029 20 6 8.7367 7.3494 2.2063 21 6 7.4624 4.9237 1.4366 22 6 6.2334 4.0115 1.4372 23 6 3.5375 -0.7492 -0.0046 24 6 2.2447 -1.1197 0.0006 25 6 1.7397 -2.5397 0.0015 26 8 0.4809 -2.5970 0.6754 27 14 2.9649 -3.6339 0.8803 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.8768 2.1240 -0.0007 32 1 3.6833 3.3196 -0.0006 33 1 4.5859 5.6207 -0.0210 34 1 5.0350 5.0164 -1.6339 35 1 6.3447 7.0376 -1.0455 36 1 7.4016 5.6140 -1.1997 37 1 7.1229 8.9129 0.8301 38 1 7.5711 8.3087 -0.7833 39 1 8.8745 10.3431 -0.1535 40 1 9.9254 8.9236 -0.3815 41 1 10.7725 7.7847 1.6477 42 1 10.2865 8.4448 3.2285 43 1 7.9433 7.8094 2.7954 44 1 9.0009 6.3856 2.6414 45 1 8.2560 4.4641 0.8474 46 1 7.8072 5.0687 2.4605 47 1 5.4396 4.4708 2.0263 48 1 6.4970 3.0473 1.8719 49 1 4.3981 -1.4018 -0.0094 50 1 1.6178 -2.8827 -1.0258 51 1 0.0957 -3.4832 0.7145 52 1 4.2692 -3.6079 0.1709 53 1 3.1400 -3.1768 2.2823 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_13287730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:01 Heat of formation + Delta-G solvation = 46.134058 kcal Electronic energy + Delta-G solvation = -31917.949839 eV Core-core repulsion = 27682.417702 eV Total energy + Delta-G solvation = -4235.532137 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.212 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.39848 -42.57868 -40.76194 -39.31089 -37.76883 -37.59903 -34.91061 -33.85356 -33.29178 -31.91908 -31.79478 -30.54441 -28.35186 -27.43159 -26.24464 -26.10341 -24.31308 -23.64462 -23.51102 -22.89144 -21.54094 -21.11211 -20.40338 -18.90863 -18.75295 -18.38940 -18.19469 -17.79299 -17.38063 -17.01746 -16.98178 -16.73076 -16.53355 -16.12398 -16.06899 -15.68782 -15.55319 -15.29060 -15.22066 -15.04743 -14.73062 -14.33137 -14.20752 -13.94389 -13.92904 -13.83122 -13.43661 -13.39099 -13.30063 -13.16556 -12.97115 -12.88963 -12.78209 -12.70644 -12.58169 -12.32724 -12.02010 -11.90039 -11.72380 -11.48497 -11.16655 -11.01800 -10.68414 -10.23389 -9.74871 -9.33012 -5.05878 0.58835 0.62151 0.87543 1.31849 1.58667 1.85635 1.98316 2.13617 2.38312 2.46617 2.54267 2.64447 2.93320 3.11765 3.12383 3.34351 3.38223 3.57201 3.62329 3.66384 3.74497 3.78195 3.81799 3.84892 3.89117 4.03095 4.08268 4.10358 4.18637 4.24641 4.26706 4.28162 4.32142 4.36146 4.45092 4.49709 4.51818 4.56456 4.63651 4.64432 4.65659 4.72042 4.77349 4.80715 4.87432 4.96864 4.99542 5.01260 5.18108 5.20534 5.42365 5.49564 5.81445 5.89148 6.11436 6.49942 6.75837 7.20789 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.001891 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.417335 B =14799.541640 C =15347.631592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.422 5.422 3 C 0.076 3.924 4 C -0.265 4.265 5 C 0.592 3.408 6 O -0.595 6.595 7 N -0.713 5.713 8 C 0.134 3.866 9 H 0.065 0.935 10 C -0.118 4.118 11 C -0.135 4.135 12 C 0.046 3.954 13 H 0.160 0.840 14 N -0.370 5.370 15 H 0.433 0.567 16 C -0.035 4.035 17 C 0.028 3.972 18 O -0.400 6.400 19 C 0.030 3.970 20 C -0.036 4.036 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.188 4.188 24 C 0.018 3.982 25 C -0.042 4.042 26 O -0.557 6.557 27 Si 0.795 3.205 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.219 0.781 32 H 0.414 0.586 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.040 0.960 49 H 0.123 0.877 50 H 0.101 0.899 51 H 0.410 0.590 52 H -0.300 1.300 53 H -0.309 1.309 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 20.353 -0.122 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.095 5.095 3 C -0.062 4.062 4 C -0.275 4.275 5 C 0.382 3.618 6 O -0.477 6.477 7 N -0.364 5.364 8 C 0.030 3.970 9 H 0.083 0.917 10 C -0.157 4.157 11 C -0.173 4.173 12 C -0.055 4.055 13 H 0.177 0.823 14 N 0.052 4.948 15 H 0.271 0.729 16 C -0.157 4.157 17 C -0.049 4.049 18 O -0.319 6.319 19 C -0.047 4.047 20 C -0.158 4.158 21 C -0.173 4.173 22 C -0.167 4.167 23 C -0.213 4.213 24 C -0.092 4.092 25 C -0.153 4.153 26 O -0.369 6.369 27 Si 0.701 3.299 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.236 0.764 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.174 0.826 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.141 0.859 50 H 0.119 0.881 51 H 0.263 0.737 52 H -0.228 1.228 53 H -0.237 1.237 Dipole moment (debyes) X Y Z Total from point charges 6.094 20.869 0.582 21.749 hybrid contribution 0.147 -0.394 -0.455 0.619 sum 6.241 20.475 0.127 21.405 Atomic orbital electron populations 1.22742 0.73991 1.07267 1.04917 1.43820 1.08507 1.04454 1.52722 1.22555 0.88732 0.93456 1.01450 1.20381 0.93187 0.92992 1.20976 1.17467 0.87092 0.82788 0.74449 1.90750 1.27592 1.76435 1.52963 1.45700 1.11168 1.04180 1.75359 1.21261 0.87747 0.91030 0.96984 0.91653 1.21711 0.99200 0.91938 1.02820 1.22081 0.99087 1.03079 0.93083 1.23392 0.88135 0.91886 1.02120 0.82258 1.45417 1.17500 1.15503 1.16420 0.72916 1.24612 1.02460 0.81769 1.06810 1.23334 0.94345 1.03084 0.84141 1.88322 1.84856 1.30309 1.28396 1.23291 0.94820 0.84058 1.02530 1.24566 1.02432 1.07129 0.81650 1.22020 0.98782 0.92460 1.04053 1.21824 0.98687 0.99682 0.96462 1.21644 0.94915 0.94881 1.09822 1.20116 0.90017 0.88955 1.10126 1.24296 0.94226 0.94093 1.02657 1.86242 1.33929 1.37587 1.79114 0.94620 0.75916 0.84400 0.74917 0.89774 0.86910 0.87644 0.76421 0.74901 0.88325 0.90233 0.85927 0.88833 0.83614 0.81709 0.85433 0.89577 0.89606 0.85698 0.83676 0.82596 0.89305 0.87411 0.89361 0.94104 0.85919 0.88138 0.73683 1.22836 1.23697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -1.03 10.71 127.77 1.37 0.33 16 2 N -0.42 6.24 3.09 -533.25 -1.65 4.60 16 3 C 0.08 -1.37 10.83 83.92 0.91 -0.46 16 4 C -0.27 2.82 6.29 -19.04 -0.12 2.70 16 5 C 0.59 -7.19 7.77 86.62 0.67 -6.52 16 6 O -0.60 1.47 16.63 -4.11 -0.07 1.40 16 7 N -0.71 18.17 5.07 -445.95 -2.26 15.91 16 8 C 0.13 -4.38 2.45 44.99 0.11 -4.27 16 9 H 0.07 -1.73 7.58 -2.39 -0.02 -1.75 16 10 C -0.12 5.09 5.39 30.59 0.16 5.26 16 11 C -0.14 7.12 4.90 30.59 0.15 7.27 16 12 C 0.05 -2.62 1.61 44.92 0.07 -2.55 16 13 H 0.16 -9.46 8.14 -2.38 -0.02 -9.48 16 14 N -0.37 22.34 0.24 -870.43 -0.21 22.13 16 15 H 0.43 -27.57 8.32 -89.69 -0.75 -28.31 16 16 C -0.04 2.05 4.93 86.32 0.43 2.48 16 17 C 0.03 -1.37 6.96 72.01 0.50 -0.87 16 18 O -0.40 16.52 10.84 -148.98 -1.62 14.91 16 19 C 0.03 -1.44 6.96 72.02 0.50 -0.94 16 20 C -0.04 2.04 4.94 86.33 0.43 2.47 16 21 C -0.14 6.49 4.90 30.61 0.15 6.64 16 22 C -0.13 4.57 5.50 30.61 0.17 4.74 16 23 C -0.19 0.96 9.49 23.62 0.22 1.18 16 24 C 0.02 -0.17 6.17 40.98 0.25 0.08 16 25 C -0.04 0.64 2.97 71.24 0.21 0.85 16 26 O -0.56 10.24 9.69 -148.98 -1.44 8.80 16 27 Si 0.79 -10.34 31.24 68.60 2.14 -8.19 16 28 H 0.08 -1.86 8.14 -2.39 -0.02 -1.88 16 29 H 0.11 -2.09 5.13 -2.39 -0.01 -2.11 16 30 H 0.11 -2.67 8.13 -2.39 -0.02 -2.69 16 31 H 0.22 -6.43 7.45 -2.91 -0.02 -6.45 16 32 H 0.41 -13.19 7.55 -92.71 -0.70 -13.89 16 33 H 0.10 -4.52 8.14 -2.39 -0.02 -4.54 16 34 H 0.08 -3.12 8.14 -2.39 -0.02 -3.14 16 35 H 0.12 -7.01 6.28 -2.38 -0.01 -7.02 16 36 H 0.09 -4.84 8.14 -2.39 -0.02 -4.86 16 37 H 0.15 -8.59 8.14 -2.39 -0.02 -8.61 16 38 H 0.17 -10.31 6.15 -2.39 -0.01 -10.32 16 39 H 0.13 -6.00 8.14 -2.39 -0.02 -6.02 16 40 H 0.09 -4.40 8.14 -2.39 -0.02 -4.42 16 41 H 0.09 -4.29 8.14 -2.39 -0.02 -4.31 16 42 H 0.13 -5.68 8.14 -2.39 -0.02 -5.70 16 43 H 0.15 -8.31 8.14 -2.39 -0.02 -8.33 16 44 H 0.16 -9.19 6.15 -2.39 -0.01 -9.21 16 45 H 0.09 -4.16 8.14 -2.39 -0.02 -4.18 16 46 H 0.11 -5.46 6.29 -2.39 -0.02 -5.48 16 47 H 0.09 -3.37 8.14 -2.39 -0.02 -3.39 16 48 H 0.04 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.12 -0.14 6.75 -2.91 -0.02 -0.16 16 50 H 0.10 -1.88 7.96 -2.39 -0.02 -1.90 16 51 H 0.41 -11.38 8.74 -74.05 -0.65 -12.03 16 52 H -0.30 1.62 6.89 99.48 0.69 2.31 16 53 H -0.31 1.19 7.11 99.48 0.71 1.89 16 Total: 1.00 -89.01 400.04 -0.05 -89.06 By element: Atomic # 1 Polarization: -165.87 SS G_CDS: -1.14 Total: -167.01 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.19 Total: 18.40 kcal Atomic # 7 Polarization: 46.75 SS G_CDS: -4.12 Total: 42.64 kcal Atomic # 8 Polarization: 28.24 SS G_CDS: -3.13 Total: 25.11 kcal Atomic # 14 Polarization: -10.34 SS G_CDS: 2.14 Total: -8.19 kcal Total: -89.01 -0.05 -89.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_13287730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.196 kcal (2) G-P(sol) polarization free energy of solvation -89.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds