Wall clock time and date at job start Sun Mar 7 2021 09:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38312 * 120.34781 * 245.00084 * 4 2 1 6 6 N 1.31958 * 121.08047 * 179.97438 * 5 4 2 7 7 C 1.31660 * 121.88175 * 359.97438 * 6 5 4 8 8 C 1.39553 * 120.56661 * 359.97046 * 7 6 5 9 9 C 1.47848 * 120.56232 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99746 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99818 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00099 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46850 * 325.00013 * 12 11 9 14 14 C 1.52998 * 109.46793 * 85.00050 * 12 11 9 15 15 C 1.53000 * 109.47029 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47056 * 300.00036 * 15 14 12 17 17 H 1.08999 * 109.47029 * 299.99673 * 16 15 14 18 18 N 1.46895 * 109.46980 * 179.97438 * 16 15 14 19 19 H 1.00893 * 109.48621 * 299.98302 * 18 16 15 20 20 C 1.46940 * 109.47935 * 179.97438 * 18 16 15 21 21 C 1.53064 * 109.38117 * 179.97438 * 20 18 16 22 22 O 1.43034 * 109.24890 * 57.64577 * 21 20 18 23 23 C 1.43034 * 113.65059 * 302.09341 * 22 21 20 24 24 C 1.46943 * 109.47749 * 60.00159 * 18 16 15 25 25 C 1.52997 * 109.46878 * 59.99965 * 16 15 14 26 26 C 1.52996 * 109.47242 * 205.00140 * 12 11 9 27 27 C 1.38391 * 120.35001 * 64.72480 * 4 2 1 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.08000 * 119.46015 * 359.97438 * 5 4 2 33 33 H 1.08007 * 119.71353 * 179.97438 * 7 6 5 34 34 H 0.97005 * 119.99756 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47345 * 299.99666 * 14 12 11 36 36 H 1.08999 * 109.47452 * 60.00332 * 14 12 11 37 37 H 1.08998 * 109.47579 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.47277 * 60.00131 * 15 14 12 39 39 H 1.08997 * 109.48635 * 299.97003 * 20 18 16 40 40 H 1.09006 * 109.48543 * 60.02130 * 20 18 16 41 41 H 1.09003 * 109.51007 * 297.71142 * 21 20 18 42 42 H 1.09007 * 109.51152 * 177.57794 * 21 20 18 43 43 H 1.08997 * 109.51125 * 297.97257 * 23 22 21 44 44 H 1.09004 * 109.54751 * 177.85746 * 23 22 21 45 45 H 1.08991 * 109.48879 * 299.97780 * 24 18 16 46 46 H 1.08997 * 109.48734 * 60.01660 * 24 18 16 47 47 H 1.09001 * 109.47057 * 179.97438 * 25 16 15 48 48 H 1.08999 * 109.47529 * 60.00014 * 25 16 15 49 49 H 1.08999 * 109.47094 * 299.99723 * 26 12 11 50 50 H 1.08999 * 109.47387 * 59.99968 * 26 12 11 51 51 H 1.08003 * 120.85450 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6397 -0.0187 2.1964 6 7 3.0857 -0.6261 3.2797 7 6 2.8795 -1.9089 3.4924 8 6 2.1724 -2.6772 2.5665 9 6 1.9403 -4.1176 2.8058 10 8 1.3234 -4.7771 1.9921 11 7 2.4127 -4.6993 3.9260 12 6 2.1823 -6.1264 4.1634 13 1 1.2045 -6.4066 3.7717 14 6 3.2674 -6.9424 3.4579 15 6 3.0264 -8.4329 3.7053 16 6 3.0729 -8.7144 5.2085 17 1 4.0507 -8.4345 5.6005 18 7 2.8410 -10.1453 5.4460 19 1 1.9357 -10.4043 5.0836 20 6 2.8862 -10.4161 6.8896 21 6 2.6437 -11.9074 7.1346 22 8 3.6269 -12.6675 6.4266 23 6 3.6383 -12.4204 5.0178 24 6 3.8826 -10.9296 4.7685 25 6 1.9879 -7.8984 5.9139 26 6 2.2292 -6.4074 5.6666 27 6 1.6835 -2.0601 1.4089 28 1 -0.3934 0.4417 0.7649 29 1 1.7924 -0.5139 -0.8899 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.8310 1.0356 2.0618 33 1 3.2607 -2.3706 4.3913 34 1 2.9053 -4.1729 4.5751 35 1 3.2339 -6.7422 2.3869 36 1 4.2452 -6.6621 3.8496 37 1 3.7996 -9.0143 3.2031 38 1 2.0486 -8.7129 3.3133 39 1 3.8644 -10.1373 7.2813 40 1 2.1135 -9.8348 7.3929 41 1 1.6493 -12.1777 6.7792 42 1 2.7194 -12.1181 8.2014 43 1 2.6780 -12.7083 4.5899 44 1 4.4334 -13.0025 4.5518 45 1 3.8496 -10.7296 3.6976 46 1 4.8607 -10.6506 5.1605 47 1 2.0207 -8.0993 6.9848 48 1 1.0101 -8.1783 5.5219 49 1 3.2070 -6.1272 6.0583 50 1 1.4562 -5.8261 6.1692 51 1 1.1288 -2.6234 0.6730 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_13287814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:14 Heat of formation + Delta-G solvation = 33.441681 kcal Electronic energy + Delta-G solvation = -31171.779153 eV Core-core repulsion = 26963.008111 eV Total energy + Delta-G solvation = -4208.771041 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.196 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.38294 -41.98004 -40.66922 -39.35140 -37.98917 -37.66767 -35.08904 -33.81882 -33.27501 -33.16053 -31.77460 -30.65332 -28.23275 -27.33528 -26.09269 -25.80382 -23.97100 -23.67590 -23.51737 -23.23241 -21.64939 -21.35569 -19.31644 -18.88715 -18.33282 -18.26130 -17.89773 -17.77836 -17.73891 -17.01770 -16.98749 -16.59552 -16.49634 -16.19439 -16.11037 -15.92863 -15.41064 -15.32082 -15.02094 -14.63302 -14.45001 -14.32656 -14.27718 -14.17679 -13.91317 -13.91010 -13.54588 -13.29845 -12.95732 -12.92213 -12.76953 -12.76108 -12.56953 -12.30045 -12.26716 -11.88732 -11.71411 -11.55611 -11.40836 -11.12827 -11.00583 -10.65368 -10.61603 -10.40810 -10.16017 -5.08783 -0.62393 -0.07368 0.64049 1.16873 1.55216 1.60330 1.87422 1.95138 2.48069 2.55571 2.58914 2.65956 2.95306 3.07022 3.13777 3.33803 3.36796 3.39613 3.40343 3.59858 3.60798 3.67895 3.69188 3.72167 3.79168 3.87518 3.89892 4.05160 4.06187 4.10418 4.11273 4.19970 4.23330 4.30787 4.33887 4.41792 4.49654 4.53317 4.58067 4.65605 4.67023 4.74968 4.77559 4.80746 4.88763 4.90768 4.99266 5.02369 5.15380 5.20931 5.27316 5.40281 5.90624 6.29831 6.60593 6.65297 6.99024 Molecular weight = 349.20amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.001834 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.823884 B =15265.798063 C =15540.828592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.068 4.068 3 Si 0.773 3.227 4 C -0.178 4.178 5 C 0.129 3.871 6 N -0.496 5.496 7 C 0.149 3.851 8 C -0.201 4.201 9 C 0.569 3.431 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.133 3.867 13 H 0.073 0.927 14 C -0.128 4.128 15 C -0.136 4.136 16 C 0.045 3.955 17 H 0.159 0.841 18 N -0.370 5.370 19 H 0.433 0.567 20 C -0.035 4.035 21 C 0.027 3.973 22 O -0.401 6.401 23 C 0.029 3.971 24 C -0.035 4.035 25 C -0.136 4.136 26 C -0.121 4.121 27 C -0.004 4.004 28 H 0.397 0.603 29 H 0.112 0.888 30 H -0.278 1.278 31 H -0.300 1.300 32 H 0.179 0.821 33 H 0.198 0.802 34 H 0.416 0.584 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.120 0.880 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -20.540 15.609 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.178 4.178 3 Si 0.679 3.321 4 C -0.180 4.180 5 C -0.026 4.026 6 N -0.204 5.204 7 C -0.010 4.010 8 C -0.206 4.206 9 C 0.356 3.644 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.029 3.971 13 H 0.091 0.909 14 C -0.168 4.168 15 C -0.174 4.174 16 C -0.057 4.057 17 H 0.176 0.824 18 N 0.052 4.948 19 H 0.271 0.729 20 C -0.156 4.156 21 C -0.050 4.050 22 O -0.320 6.320 23 C -0.048 4.048 24 C -0.157 4.157 25 C -0.174 4.174 26 C -0.159 4.159 27 C -0.030 4.030 28 H 0.247 0.753 29 H 0.129 0.871 30 H -0.205 1.205 31 H -0.228 1.228 32 H 0.196 0.804 33 H 0.215 0.785 34 H 0.254 0.746 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.104 0.896 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.175 0.825 46 H 0.163 0.837 47 H 0.139 0.861 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.100 0.900 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.335 -20.331 14.918 25.587 hybrid contribution -0.761 -0.474 -1.510 1.756 sum 3.574 -20.805 13.408 25.008 Atomic orbital electron populations 1.86518 1.16928 1.82068 1.50663 1.25091 0.85505 1.10810 0.96443 0.93876 0.78113 0.74378 0.85757 1.21392 1.02073 0.95228 0.99311 1.23157 0.90683 1.00747 0.87996 1.67795 1.20006 1.11465 1.21125 1.23533 0.90905 0.88884 0.97699 1.21096 1.05602 0.95453 0.98462 1.18034 0.78219 0.86148 0.82019 1.90809 1.42407 1.65343 1.46567 1.45849 1.56858 1.11676 1.21610 1.21331 0.99553 0.78762 0.97443 0.90900 1.21829 0.99768 0.94478 1.00689 1.22023 1.05869 0.96716 0.92771 1.23421 1.06099 0.77010 0.99158 0.82374 1.45417 1.18958 1.14696 1.15775 0.72882 1.24599 1.11963 1.00514 0.78535 1.23332 0.93155 0.87509 1.00957 1.88324 1.57858 1.65892 1.19892 1.23295 1.05940 0.93373 0.82166 1.24558 0.94125 0.92916 1.04121 1.22089 0.98357 0.93510 1.03431 1.21744 1.05312 0.96751 0.92143 1.21651 0.92227 0.93716 0.95421 0.75266 0.87102 1.20467 1.22821 0.80422 0.78504 0.74568 0.93505 0.89326 0.87466 0.89090 0.83691 0.81678 0.89554 0.85532 0.89587 0.85774 0.82473 0.83749 0.86137 0.88662 0.88335 0.90009 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 7.61 12.84 -148.98 -1.91 5.69 16 2 C -0.07 1.04 2.82 71.24 0.20 1.24 16 3 Si 0.77 -12.58 29.83 68.60 2.05 -10.53 16 4 C -0.18 2.84 5.35 -19.81 -0.11 2.74 16 5 C 0.13 -2.22 9.84 84.69 0.83 -1.39 16 6 N -0.50 8.33 10.35 -194.76 -2.01 6.31 16 7 C 0.15 -3.25 10.71 85.04 0.91 -2.34 16 8 C -0.20 3.76 5.89 -19.99 -0.12 3.64 16 9 C 0.57 -11.49 7.75 86.79 0.67 -10.82 16 10 O -0.57 6.60 16.08 -3.88 -0.06 6.54 16 11 N -0.71 22.14 5.03 -445.42 -2.24 19.90 16 12 C 0.13 -4.99 2.45 44.99 0.11 -4.88 16 13 H 0.07 -2.34 7.58 -2.39 -0.02 -2.36 16 14 C -0.13 5.18 5.49 30.59 0.17 5.34 16 15 C -0.14 6.96 4.90 30.60 0.15 7.11 16 16 C 0.04 -2.64 1.62 44.92 0.07 -2.57 16 17 H 0.16 -9.72 8.14 -2.39 -0.02 -9.74 16 18 N -0.37 23.02 0.24 -870.42 -0.21 22.81 16 19 H 0.43 -28.44 8.32 -89.70 -0.75 -29.18 16 20 C -0.03 2.07 4.93 86.32 0.43 2.50 16 21 C 0.03 -1.37 6.96 72.00 0.50 -0.87 16 22 O -0.40 16.95 10.84 -148.98 -1.62 15.33 16 23 C 0.03 -1.44 6.96 72.02 0.50 -0.94 16 24 C -0.04 2.06 4.94 86.33 0.43 2.49 16 25 C -0.14 7.50 4.90 30.61 0.15 7.65 16 26 C -0.12 5.62 5.39 30.61 0.17 5.78 16 27 C 0.00 0.05 9.38 22.73 0.21 0.27 16 28 H 0.40 -8.76 8.70 -74.06 -0.64 -9.41 16 29 H 0.11 -1.55 7.96 -2.39 -0.02 -1.57 16 30 H -0.28 3.34 7.11 99.48 0.71 4.05 16 31 H -0.30 2.15 7.11 99.48 0.71 2.86 16 32 H 0.18 -3.75 4.91 -2.91 -0.01 -3.77 16 33 H 0.20 -6.19 6.42 -2.91 -0.02 -6.21 16 34 H 0.42 -15.29 6.67 -92.70 -0.62 -15.91 16 35 H 0.05 -1.41 8.14 -2.38 -0.02 -1.43 16 36 H 0.09 -3.73 8.14 -2.39 -0.02 -3.75 16 37 H 0.11 -5.74 6.29 -2.39 -0.02 -5.76 16 38 H 0.09 -4.59 8.14 -2.39 -0.02 -4.61 16 39 H 0.15 -8.72 8.14 -2.39 -0.02 -8.74 16 40 H 0.17 -10.56 6.15 -2.38 -0.01 -10.58 16 41 H 0.09 -4.51 8.14 -2.39 -0.02 -4.53 16 42 H 0.13 -6.06 8.14 -2.38 -0.02 -6.08 16 43 H 0.09 -4.41 8.14 -2.39 -0.02 -4.43 16 44 H 0.12 -5.78 8.14 -2.38 -0.02 -5.80 16 45 H 0.16 -9.57 6.15 -2.39 -0.01 -9.58 16 46 H 0.14 -8.47 8.14 -2.39 -0.02 -8.49 16 47 H 0.12 -7.13 6.28 -2.39 -0.01 -7.14 16 48 H 0.09 -5.21 8.14 -2.39 -0.02 -5.23 16 49 H 0.10 -4.80 8.14 -2.39 -0.02 -4.82 16 50 H 0.08 -3.49 8.14 -2.39 -0.02 -3.51 16 51 H 0.14 -1.57 7.74 -2.91 -0.02 -1.59 16 Total: 1.00 -84.55 388.72 -1.73 -86.28 By element: Atomic # 1 Polarization: -166.30 SS G_CDS: -1.00 Total: -167.29 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.28 Total: 14.96 kcal Atomic # 7 Polarization: 53.48 SS G_CDS: -4.47 Total: 49.02 kcal Atomic # 8 Polarization: 31.15 SS G_CDS: -3.59 Total: 27.56 kcal Atomic # 14 Polarization: -12.58 SS G_CDS: 2.05 Total: -10.53 kcal Total: -84.55 -1.73 -86.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_13287814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.725 kcal (2) G-P(sol) polarization free energy of solvation -84.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds