Wall clock time and date at job start Sun Mar 7 2021 09:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36409 * 125.80580 * 2 1 4 4 C 1.47388 * 127.19055 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99717 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99685 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99888 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47021 * 325.00122 * 7 6 4 9 9 C 1.53004 * 109.47109 * 84.99788 * 7 6 4 10 10 C 1.52993 * 109.47027 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47367 * 300.00264 * 10 9 7 12 12 H 1.08997 * 109.47064 * 300.00094 * 11 10 9 13 13 N 1.46897 * 109.47174 * 180.02562 * 11 10 9 14 14 H 1.00904 * 109.47866 * 299.98012 * 13 11 10 15 15 C 1.46936 * 109.47947 * 179.97438 * 13 11 10 16 16 C 1.53075 * 109.37684 * 179.97438 * 15 13 11 17 17 O 1.43031 * 109.25193 * 57.63884 * 16 15 13 18 18 C 1.43031 * 113.65200 * 302.09562 * 17 16 15 19 19 C 1.46942 * 109.47940 * 60.00038 * 13 11 10 20 20 C 1.52998 * 109.46968 * 59.99990 * 11 10 9 21 21 C 1.52994 * 109.47299 * 299.99858 * 20 11 10 22 22 C 1.47019 * 105.61961 * 179.77828 * 3 2 1 23 23 C 1.34183 * 105.95006 * 0.39206 * 22 3 2 24 24 C 1.50696 * 125.43561 * 179.86919 * 23 22 3 25 25 O 1.42903 * 109.47131 * 299.71135 * 24 23 22 26 26 Si 1.86305 * 109.47185 * 179.71675 * 24 23 22 27 27 O 1.33652 * 125.79804 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 300.00526 * 1 2 3 30 30 H 1.09003 * 109.46749 * 60.00327 * 1 2 3 31 31 H 0.97000 * 120.00849 * 0.02562 * 6 4 3 32 32 H 1.08999 * 109.47440 * 300.00430 * 9 7 6 33 33 H 1.08997 * 109.46907 * 60.00264 * 9 7 6 34 34 H 1.09002 * 109.46956 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.47105 * 60.00332 * 10 9 7 36 36 H 1.09005 * 109.48449 * 299.95634 * 15 13 11 37 37 H 1.08996 * 109.48956 * 60.02064 * 15 13 11 38 38 H 1.09000 * 109.50848 * 297.70557 * 16 15 13 39 39 H 1.09006 * 109.50762 * 177.57554 * 16 15 13 40 40 H 1.08998 * 109.50697 * 297.97211 * 18 17 16 41 41 H 1.08993 * 109.50841 * 177.83599 * 18 17 16 42 42 H 1.08999 * 109.48370 * 299.97805 * 19 13 11 43 43 H 1.08994 * 109.48820 * 60.03778 * 19 13 11 44 44 H 1.09000 * 109.46706 * 180.02562 * 20 11 10 45 45 H 1.08997 * 109.47143 * 60.00153 * 20 11 10 46 46 H 1.08997 * 109.47264 * 300.00221 * 21 20 11 47 47 H 1.08996 * 109.47252 * 179.97438 * 21 20 11 48 48 H 1.07997 * 127.02804 * 180.29003 * 22 3 2 49 49 H 1.08999 * 109.47358 * 59.71494 * 24 23 22 50 50 H 0.96700 * 114.00311 * 300.00591 * 25 24 23 51 51 H 1.48497 * 110.00233 * 179.97438 * 26 24 23 52 52 H 1.48492 * 109.99800 * 301.31995 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8741 2.5157 -0.0005 5 8 0.6891 2.7892 -0.0015 6 7 2.7932 3.5014 0.0001 7 6 2.3648 4.9024 -0.0010 8 1 1.4542 5.0035 -0.5915 9 6 2.0938 5.3540 1.4355 10 6 1.6458 6.8169 1.4343 11 6 2.7471 7.6870 0.8253 12 1 3.6578 7.5864 1.4157 13 7 2.3172 9.0917 0.8247 14 1 1.4742 9.1853 0.2782 15 6 3.3750 9.9276 0.2405 16 6 2.9243 11.3905 0.2404 17 8 2.6186 11.7899 1.5794 18 6 1.6092 10.9893 2.2006 19 6 2.0574 9.5252 2.2045 20 6 3.0180 7.2355 -0.6112 21 6 3.4661 5.7726 -0.6100 22 6 3.6849 0.5990 0.0055 23 6 3.5859 -0.7392 -0.0006 24 6 4.7458 -1.7012 -0.0011 25 8 5.5425 -1.4862 -1.1678 26 14 4.1025 -3.4497 -0.0020 27 8 2.2888 -1.0840 -0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.7384 3.2833 0.0005 32 1 1.3089 4.7344 1.8693 33 1 3.0044 5.2530 2.0260 34 1 1.4532 7.1387 2.4578 35 1 0.7351 6.9175 0.8439 36 1 4.2855 9.8274 0.8312 37 1 3.5681 9.6069 -0.7832 38 1 2.0368 11.4980 -0.3831 39 1 3.7244 12.0179 -0.1529 40 1 0.6767 11.0830 1.6442 41 1 1.4574 11.3261 3.2260 42 1 1.2725 8.9057 2.6385 43 1 2.9682 9.4251 2.7947 44 1 3.8029 7.8551 -1.0448 45 1 2.1073 7.3361 -1.2015 46 1 4.3768 5.6720 -0.0197 47 1 3.6587 5.4508 -1.6334 48 1 4.5929 1.1838 0.0114 49 1 5.3535 -1.5381 0.8890 50 1 5.0653 -1.6142 -1.9990 51 1 5.2367 -4.4082 -0.0031 52 1 3.2464 -3.6764 1.1899 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608376_13308374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:19 Heat of formation + Delta-G solvation = 33.468809 kcal Electronic energy + Delta-G solvation = -32166.473444 eV Core-core repulsion = 27832.673438 eV Total energy + Delta-G solvation = -4333.800006 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.59459 -44.54719 -42.16498 -40.97281 -39.32628 -38.78362 -36.25683 -35.43007 -34.94566 -33.91981 -33.70197 -32.51324 -30.46188 -29.83917 -28.18480 -26.85119 -25.96436 -25.59004 -25.40515 -24.59415 -23.31284 -22.81685 -21.66090 -21.07609 -20.40157 -19.92688 -19.73503 -19.19320 -18.97560 -18.75262 -18.49544 -18.42135 -18.11160 -17.61586 -17.47158 -17.15919 -16.89143 -16.55695 -16.47292 -16.28955 -16.17073 -16.12164 -15.78831 -15.59021 -15.23823 -15.03267 -14.96245 -14.91553 -14.89623 -14.73985 -14.66231 -14.59616 -14.40725 -14.16364 -13.98011 -13.69764 -13.53796 -13.44720 -13.18325 -13.04391 -12.77142 -12.04488 -11.71969 -11.38532 -11.29885 -10.36453 -5.67797 -1.63106 -0.54877 0.02007 0.27145 0.31711 0.46515 0.51108 0.62750 0.65761 0.93430 0.94502 1.10468 1.20020 1.27404 1.31191 1.38120 1.47143 1.52678 1.67882 1.76420 1.83673 1.94117 2.05095 2.10262 2.25315 2.29922 2.39544 2.40482 2.42598 2.44873 2.55689 2.61032 2.63713 2.71026 2.75526 2.86167 2.87080 2.95331 2.96225 3.17448 3.30676 3.31067 3.50845 3.54457 3.62558 3.66728 3.79606 3.83586 3.85608 3.96192 4.20640 4.32319 4.40588 5.10098 5.37537 5.65480 6.16575 Molecular weight = 352.20amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.001960 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.958770 B =14279.581352 C =14912.538563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.103 3.897 3 C -0.264 4.264 4 C 0.600 3.400 5 O -0.535 6.535 6 N -0.726 5.726 7 C 0.143 3.857 8 H 0.096 0.904 9 C -0.129 4.129 10 C -0.137 4.137 11 C 0.023 3.977 12 H 0.139 0.861 13 N -0.383 5.383 14 H 0.421 0.579 15 C -0.048 4.048 16 C 0.036 3.964 17 O -0.357 6.357 18 C 0.037 3.963 19 C -0.048 4.048 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.153 4.153 23 C -0.048 4.048 24 C -0.029 4.029 25 O -0.529 6.529 26 Si 0.701 3.299 27 O -0.164 6.164 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.404 0.596 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.157 0.843 49 H 0.134 0.866 50 H 0.385 0.615 51 H -0.244 1.244 52 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 22.156 0.224 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 C -0.268 4.268 4 C 0.389 3.611 5 O -0.413 6.413 6 N -0.378 5.378 7 C 0.038 3.962 8 H 0.114 0.886 9 C -0.169 4.169 10 C -0.175 4.175 11 C -0.078 4.078 12 H 0.157 0.843 13 N 0.039 4.961 14 H 0.257 0.743 15 C -0.169 4.169 16 C -0.041 4.041 17 O -0.274 6.274 18 C -0.041 4.041 19 C -0.169 4.169 20 C -0.174 4.174 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.096 4.096 24 C -0.139 4.139 25 O -0.335 6.335 26 Si 0.600 3.400 27 O -0.061 6.061 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.239 0.761 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.099 0.901 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.175 0.825 49 H 0.151 0.849 50 H 0.233 0.767 51 H -0.168 1.168 52 H -0.176 1.176 Dipole moment (debyes) X Y Z Total from point charges -0.911 21.531 1.343 21.592 hybrid contribution 0.483 0.371 0.056 0.612 sum -0.428 21.902 1.398 21.951 Atomic orbital electron populations 1.20596 0.83204 1.04556 1.05313 1.22965 0.94174 0.82912 0.95014 1.20981 0.93371 0.93411 1.19055 1.17173 0.85182 0.83793 0.74925 1.90810 1.16463 1.84064 1.49999 1.45715 1.10158 1.04990 1.76929 1.20959 0.98578 0.80743 0.95906 0.88575 1.21939 1.03724 0.93206 0.97983 1.22102 0.96757 0.96118 1.02553 1.23777 1.03525 0.77213 1.03284 0.84308 1.45682 1.18123 1.15633 1.16681 0.74298 1.24715 0.92646 0.94101 1.05482 1.23267 1.04169 0.91115 0.85530 1.88402 1.57448 1.54794 1.26740 1.23273 0.91613 0.85618 1.03555 1.24725 1.09577 1.01554 0.81079 1.22070 1.04562 0.99015 0.91759 1.21769 0.98837 0.91741 1.04078 1.22513 0.96181 0.93549 1.04966 1.22714 0.82921 0.95712 1.08267 1.24414 0.89677 1.07596 0.92236 1.86569 1.38225 1.93328 1.15373 0.94175 0.82448 0.73976 0.89382 1.83735 1.16451 1.34922 1.70980 0.89777 0.88365 0.88162 0.76069 0.88957 0.90427 0.88998 0.89037 0.84303 0.83839 0.90072 0.84024 0.90057 0.84021 0.83811 0.84308 0.88733 0.88952 0.89954 0.88712 0.82513 0.84874 0.76666 1.16794 1.17611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.79 9.14 36.01 0.33 1.12 16 2 C 0.10 -0.85 7.37 -34.97 -0.26 -1.11 16 3 C -0.26 2.42 6.31 -103.28 -0.65 1.77 16 4 C 0.60 -6.24 7.78 -12.54 -0.10 -6.33 16 5 O -0.54 4.21 15.32 5.27 0.08 4.29 16 6 N -0.73 10.84 5.07 -54.89 -0.28 10.56 16 7 C 0.14 -2.66 2.45 -67.92 -0.17 -2.82 16 8 H 0.10 -1.61 7.58 -51.93 -0.39 -2.01 16 9 C -0.13 2.59 5.49 -26.73 -0.15 2.45 16 10 C -0.14 3.44 4.90 -26.73 -0.13 3.31 16 11 C 0.02 -0.66 1.61 -67.72 -0.11 -0.77 16 12 H 0.14 -3.96 8.14 -51.93 -0.42 -4.38 16 13 N -0.38 11.57 0.24 -226.47 -0.05 11.52 16 14 H 0.42 -13.44 8.32 -39.29 -0.33 -13.77 16 15 C -0.05 1.38 4.93 -3.77 -0.02 1.36 16 16 C 0.04 -0.93 6.96 37.20 0.26 -0.67 16 17 O -0.36 7.78 10.84 -35.23 -0.38 7.40 16 18 C 0.04 -0.93 6.97 37.22 0.26 -0.67 16 19 C -0.05 1.37 4.94 -3.74 -0.02 1.35 16 20 C -0.14 3.55 4.90 -26.74 -0.13 3.42 16 21 C -0.13 2.76 5.39 -26.73 -0.14 2.62 16 22 C -0.15 1.52 10.46 -37.45 -0.39 1.13 16 23 C -0.05 0.42 6.20 -35.74 -0.22 0.20 16 24 C -0.03 0.27 2.97 36.00 0.11 0.37 16 25 O -0.53 4.86 12.87 -35.23 -0.45 4.41 16 26 Si 0.70 -5.95 32.09 -169.99 -5.45 -11.40 16 27 O -0.16 1.28 8.89 7.66 0.07 1.35 16 28 H 0.08 -0.89 8.14 -51.93 -0.42 -1.31 16 29 H 0.10 -0.96 8.08 -51.93 -0.42 -1.38 16 30 H 0.10 -0.99 8.08 -51.93 -0.42 -1.41 16 31 H 0.40 -6.60 7.77 -40.82 -0.32 -6.92 16 32 H 0.09 -1.51 8.14 -51.93 -0.42 -1.93 16 33 H 0.08 -1.56 8.14 -51.93 -0.42 -1.98 16 34 H 0.09 -2.39 6.28 -51.93 -0.33 -2.71 16 35 H 0.09 -2.29 8.14 -51.93 -0.42 -2.71 16 36 H 0.14 -4.00 8.14 -51.93 -0.42 -4.42 16 37 H 0.14 -4.35 6.15 -51.93 -0.32 -4.67 16 38 H 0.08 -2.14 8.14 -51.93 -0.42 -2.56 16 39 H 0.14 -3.48 8.14 -51.93 -0.42 -3.91 16 40 H 0.08 -2.13 8.14 -51.93 -0.42 -2.55 16 41 H 0.14 -3.45 8.14 -51.93 -0.42 -3.88 16 42 H 0.14 -4.27 6.15 -51.93 -0.32 -4.59 16 43 H 0.14 -3.96 8.14 -51.93 -0.42 -4.38 16 44 H 0.09 -2.58 6.29 -51.93 -0.33 -2.91 16 45 H 0.09 -2.42 8.14 -51.93 -0.42 -2.84 16 46 H 0.08 -1.83 8.14 -51.93 -0.42 -2.25 16 47 H 0.09 -1.92 8.14 -51.93 -0.42 -2.34 16 48 H 0.16 -1.93 7.74 -52.49 -0.41 -2.33 16 49 H 0.13 -1.30 7.96 -51.93 -0.41 -1.71 16 50 H 0.39 -4.90 8.70 45.56 0.40 -4.50 16 51 H -0.24 1.32 7.11 56.52 0.40 1.72 16 52 H -0.25 1.36 7.11 56.52 0.40 1.76 16 LS Contribution 401.42 15.07 6.05 6.05 Total: 1.00 -35.32 401.42 -10.67 -45.98 By element: Atomic # 1 Polarization: -78.17 SS G_CDS: -8.71 Total: -86.88 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.53 Total: 6.73 kcal Atomic # 7 Polarization: 22.41 SS G_CDS: -0.33 Total: 22.08 kcal Atomic # 8 Polarization: 18.13 SS G_CDS: -0.69 Total: 17.44 kcal Atomic # 14 Polarization: -5.95 SS G_CDS: -5.45 Total: -11.40 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.32 -10.67 -45.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_13308374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.452 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds