Wall clock time and date at job start Sun Mar 7 2021 09:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.34174 * 125.43799 * 64.72491 * 4 2 1 6 6 C 1.47024 * 105.95318 * 179.86804 * 5 4 2 7 7 C 1.47375 * 127.19530 * 180.15122 * 6 5 4 8 8 O 1.21619 * 119.99858 * 0.30700 * 7 6 5 9 9 N 1.34768 * 120.00377 * 180.30845 * 7 6 5 10 10 C 1.46500 * 120.00181 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47636 * 325.00354 * 10 9 7 12 12 C 1.53003 * 109.47128 * 85.00235 * 10 9 7 13 13 C 1.53002 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47017 * 299.99518 * 13 12 10 15 15 H 1.08997 * 109.47285 * 300.00700 * 14 13 12 16 16 N 1.46896 * 109.47239 * 179.97438 * 14 13 12 17 17 H 1.00899 * 109.47736 * 300.00458 * 16 14 13 18 18 C 1.46931 * 109.47898 * 179.97438 * 16 14 13 19 19 C 1.53074 * 109.37955 * 180.02562 * 18 16 14 20 20 O 1.43031 * 109.25551 * 57.62342 * 19 18 16 21 21 C 1.43024 * 113.65464 * 302.10726 * 20 19 18 22 22 C 1.46935 * 109.47546 * 60.01973 * 16 14 13 23 23 C 1.53003 * 109.46684 * 60.00093 * 14 13 12 24 24 C 1.52999 * 109.47236 * 204.99771 * 10 9 7 25 25 C 1.36419 * 105.61603 * 0.38664 * 6 5 4 26 26 O 1.33655 * 108.39707 * 359.76467 * 25 6 5 27 27 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 28 28 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 29 29 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 30 30 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 31 31 H 1.07998 * 127.02132 * 359.97438 * 5 4 2 32 32 H 0.97006 * 120.00330 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.47022 * 299.99849 * 12 10 9 34 34 H 1.09000 * 109.47461 * 59.99362 * 12 10 9 35 35 H 1.08998 * 109.46885 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.46989 * 59.99704 * 13 12 10 37 37 H 1.08999 * 109.49112 * 299.96184 * 18 16 14 38 38 H 1.09004 * 109.48994 * 60.02619 * 18 16 14 39 39 H 1.09009 * 109.49821 * 297.69723 * 19 18 16 40 40 H 1.09000 * 109.54985 * 177.59236 * 19 18 16 41 41 H 1.09001 * 109.50887 * 297.96549 * 21 20 19 42 42 H 1.09003 * 109.54499 * 177.85693 * 21 20 19 43 43 H 1.08998 * 109.49092 * 299.97967 * 22 16 14 44 44 H 1.08997 * 109.48731 * 60.02000 * 22 16 14 45 45 H 1.09003 * 109.47022 * 180.02562 * 23 14 13 46 46 H 1.09002 * 109.47585 * 59.99985 * 23 14 13 47 47 H 1.08999 * 109.47653 * 300.00421 * 24 10 9 48 48 H 1.08998 * 109.46926 * 60.00573 * 24 10 9 49 49 H 1.08000 * 125.80531 * 179.76459 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7506 -2.0110 1.5062 6 6 2.4128 -2.2461 2.7976 7 6 2.5012 -3.5191 3.5349 8 8 1.9948 -4.5246 3.0748 9 7 3.1430 -3.5691 4.7189 10 6 3.2303 -4.8345 5.4520 11 1 2.3142 -5.4056 5.3015 12 6 4.4242 -5.6409 4.9371 13 6 4.5150 -6.9627 5.7022 14 6 4.6981 -6.6768 7.1941 15 1 5.6142 -6.1059 7.3449 16 7 4.7847 -7.9459 7.9288 17 1 3.9364 -8.4740 7.7892 18 6 4.9611 -7.6715 9.3615 19 6 5.0517 -8.9953 10.1248 20 8 6.1345 -9.7689 9.6006 21 6 6.0198 -10.0422 8.2014 22 6 5.9312 -8.7208 7.4348 23 6 3.5041 -5.8704 7.7090 24 6 3.4136 -4.5481 6.9437 25 6 2.9239 -1.0384 3.1735 26 8 2.6261 -0.1417 2.2282 27 1 -0.3934 0.4416 -0.7651 28 1 1.7924 -0.5138 -0.8899 29 1 1.5877 2.4585 -1.2243 30 1 1.5613 2.4680 1.2084 31 1 1.2273 -2.7372 0.9020 32 1 3.5472 -2.7672 5.0857 33 1 4.2937 -5.8450 3.8743 34 1 5.3404 -5.0699 5.0874 35 1 5.3654 -7.5374 5.3351 36 1 3.5988 -7.5335 5.5514 37 1 5.8780 -7.1019 9.5125 38 1 4.1109 -7.0968 9.7291 39 1 4.1193 -9.5477 10.0071 40 1 5.2253 -8.7955 11.1822 41 1 5.1207 -10.6305 8.0179 42 1 6.8943 -10.5998 7.8659 43 1 5.8013 -8.9250 6.3720 44 1 6.8477 -8.1506 7.5862 45 1 3.6347 -5.6663 8.7717 46 1 2.5878 -6.4412 7.5582 47 1 4.3298 -3.9770 7.0942 48 1 2.5630 -3.9736 7.3106 49 1 3.4755 -0.8404 4.0807 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_13456056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:50 Heat of formation + Delta-G solvation = 14.047539 kcal Electronic energy + Delta-G solvation = -29788.978468 eV Core-core repulsion = 25609.873912 eV Total energy + Delta-G solvation = -4179.104556 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.75585 -43.37012 -40.91397 -39.33542 -38.13024 -37.62465 -35.00797 -33.94477 -33.26771 -32.13646 -31.76371 -30.56598 -28.20770 -26.67144 -26.08065 -25.13039 -23.65020 -23.50872 -23.06539 -22.27755 -21.47413 -20.77689 -19.06753 -18.88035 -18.81728 -18.22328 -17.77575 -17.45551 -17.34946 -17.18362 -16.97581 -16.55752 -16.23343 -16.11350 -15.95862 -15.84491 -15.29314 -15.25425 -14.87358 -14.31262 -14.22667 -14.18500 -14.10822 -13.93003 -13.90102 -13.71119 -13.28578 -12.96040 -12.93960 -12.81668 -12.75904 -12.56620 -12.28823 -12.20616 -11.87925 -11.69982 -11.46581 -11.25429 -11.00230 -10.99646 -10.70546 -10.20616 -9.81167 -4.98544 0.22716 0.65005 0.75209 1.12975 1.43890 1.71067 1.92568 2.00140 2.21234 2.49155 2.56648 2.66717 2.96189 3.14782 3.29404 3.37510 3.41026 3.46889 3.52123 3.65228 3.69602 3.79430 3.84877 3.91255 3.92885 4.06573 4.11122 4.12642 4.21575 4.24506 4.32065 4.34541 4.37640 4.46959 4.53973 4.54501 4.59093 4.66392 4.68316 4.78042 4.81557 4.86375 4.91346 5.00746 5.03441 5.09225 5.18462 5.23466 5.44701 5.82929 5.91250 6.41663 6.43335 7.11380 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.039144 B = 0.001901 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.134888 B =14722.311293 C =14903.270412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.050 4.050 3 Si 0.782 3.218 4 C -0.017 4.017 5 C -0.152 4.152 6 C -0.271 4.271 7 C 0.592 3.408 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.133 3.867 11 H 0.067 0.933 12 C -0.127 4.127 13 C -0.136 4.136 14 C 0.046 3.954 15 H 0.161 0.839 16 N -0.370 5.370 17 H 0.433 0.567 18 C -0.035 4.035 19 C 0.027 3.973 20 O -0.401 6.401 21 C 0.029 3.971 22 C -0.035 4.035 23 C -0.136 4.136 24 C -0.120 4.120 25 C 0.065 3.935 26 O -0.172 6.172 27 H 0.405 0.595 28 H 0.121 0.879 29 H -0.276 1.276 30 H -0.303 1.303 31 H 0.144 0.856 32 H 0.417 0.583 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.078 0.922 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.776 -13.025 17.191 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.158 4.158 3 Si 0.686 3.314 4 C -0.065 4.065 5 C -0.172 4.172 6 C -0.276 4.276 7 C 0.380 3.620 8 O -0.464 6.464 9 N -0.361 5.361 10 C 0.029 3.971 11 H 0.085 0.915 12 C -0.166 4.166 13 C -0.174 4.174 14 C -0.056 4.056 15 H 0.178 0.822 16 N 0.051 4.949 17 H 0.271 0.729 18 C -0.156 4.156 19 C -0.049 4.049 20 O -0.319 6.319 21 C -0.048 4.048 22 C -0.157 4.157 23 C -0.174 4.174 24 C -0.158 4.158 25 C -0.005 4.005 26 O -0.067 6.067 27 H 0.258 0.742 28 H 0.139 0.861 29 H -0.202 1.202 30 H -0.231 1.231 31 H 0.162 0.838 32 H 0.254 0.746 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.103 0.897 40 H 0.145 0.855 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.139 0.861 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.097 0.903 49 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 11.750 -12.849 17.556 24.726 hybrid contribution -1.977 -0.103 -1.075 2.252 sum 9.773 -12.952 16.481 23.128 Atomic orbital electron populations 1.86509 1.17763 1.80987 1.51812 1.24131 0.84468 1.12996 0.94164 0.93677 0.89878 0.70936 0.76924 1.21280 1.01092 0.91954 0.92152 1.22564 1.01908 0.95822 0.96871 1.21555 1.11062 0.95659 0.99302 1.17320 0.77234 0.86256 0.81171 1.90794 1.49105 1.37259 1.69197 1.45725 1.56477 1.13959 1.19953 1.21294 0.99154 0.84270 0.92340 0.91507 1.21819 0.98880 0.96235 0.99687 1.22022 1.05773 0.98345 0.91262 1.23415 1.05875 0.83498 0.92795 0.82167 1.45421 1.18330 1.16106 1.15024 0.72941 1.24596 1.11641 1.02041 0.77331 1.23326 0.91594 0.89273 1.00754 1.88320 1.46459 1.73198 1.23953 1.23281 1.06612 0.94733 0.80158 1.24546 0.90981 0.95538 1.04653 1.22091 0.97130 0.95707 1.02504 1.21736 1.05139 0.98392 0.90554 1.25414 0.97137 0.84999 0.92952 1.83711 1.57163 1.39405 1.26450 0.74236 0.86147 1.20218 1.23070 0.83820 0.74592 0.93643 0.89049 0.87323 0.89346 0.83584 0.81767 0.89651 0.85524 0.89669 0.85703 0.82465 0.83628 0.86110 0.88908 0.88077 0.90293 0.71628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 6.06 12.86 -148.98 -1.92 4.15 16 2 C -0.05 0.71 2.96 71.24 0.21 0.92 16 3 Si 0.78 -11.82 32.09 68.60 2.20 -9.61 16 4 C -0.02 0.20 6.22 24.76 0.15 0.36 16 5 C -0.15 1.51 10.90 23.65 0.26 1.77 16 6 C -0.27 4.34 6.31 -18.99 -0.12 4.22 16 7 C 0.59 -10.21 7.78 86.65 0.67 -9.54 16 8 O -0.58 4.37 16.65 -4.09 -0.07 4.30 16 9 N -0.71 21.24 5.07 -445.85 -2.26 18.98 16 10 C 0.13 -4.82 2.45 44.99 0.11 -4.71 16 11 H 0.07 -1.99 7.58 -2.39 -0.02 -2.01 16 12 C -0.13 5.02 5.49 30.60 0.17 5.18 16 13 C -0.14 6.88 4.89 30.59 0.15 7.03 16 14 C 0.05 -2.68 1.62 44.92 0.07 -2.61 16 15 H 0.16 -9.84 8.14 -2.39 -0.02 -9.86 16 16 N -0.37 22.90 0.24 -870.61 -0.21 22.69 16 17 H 0.43 -28.14 8.32 -89.69 -0.75 -28.89 16 18 C -0.03 2.06 4.93 86.32 0.43 2.49 16 19 C 0.03 -1.37 6.96 72.01 0.50 -0.87 16 20 O -0.40 16.87 10.84 -148.98 -1.62 15.26 16 21 C 0.03 -1.43 6.96 71.99 0.50 -0.93 16 22 C -0.04 2.06 4.93 86.31 0.43 2.49 16 23 C -0.14 7.42 4.90 30.61 0.15 7.57 16 24 C -0.12 5.46 5.39 30.61 0.17 5.63 16 25 C 0.07 -1.48 11.61 67.40 0.78 -0.70 16 26 O -0.17 2.71 8.90 4.37 0.04 2.74 16 27 H 0.41 -7.77 8.74 -74.06 -0.65 -8.42 16 28 H 0.12 -2.32 7.96 -2.39 -0.02 -2.34 16 29 H -0.28 3.08 7.11 99.48 0.71 3.79 16 30 H -0.30 1.96 7.11 99.48 0.71 2.67 16 31 H 0.14 -1.07 8.06 -2.91 -0.02 -1.10 16 32 H 0.42 -15.35 7.57 -92.70 -0.70 -16.05 16 33 H 0.04 -1.31 8.14 -2.39 -0.02 -1.33 16 34 H 0.09 -3.84 8.14 -2.39 -0.02 -3.86 16 35 H 0.11 -5.78 6.29 -2.39 -0.02 -5.80 16 36 H 0.09 -4.36 8.14 -2.39 -0.02 -4.38 16 37 H 0.15 -8.78 8.14 -2.39 -0.02 -8.79 16 38 H 0.16 -10.43 6.15 -2.38 -0.01 -10.45 16 39 H 0.09 -4.42 8.14 -2.38 -0.02 -4.44 16 40 H 0.13 -6.04 8.14 -2.39 -0.02 -6.06 16 41 H 0.09 -4.34 8.14 -2.39 -0.02 -4.36 16 42 H 0.13 -5.81 8.14 -2.39 -0.02 -5.83 16 43 H 0.16 -9.54 6.15 -2.39 -0.01 -9.56 16 44 H 0.15 -8.56 8.14 -2.39 -0.02 -8.58 16 45 H 0.12 -7.07 6.29 -2.39 -0.01 -7.08 16 46 H 0.09 -4.96 8.14 -2.39 -0.02 -4.98 16 47 H 0.10 -4.91 8.14 -2.39 -0.02 -4.93 16 48 H 0.08 -3.27 8.14 -2.39 -0.02 -3.29 16 49 H 0.27 -9.58 7.47 -2.91 -0.02 -9.60 16 Total: 1.00 -88.43 381.60 -0.27 -88.71 By element: Atomic # 1 Polarization: -164.44 SS G_CDS: -1.08 Total: -165.52 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 4.63 Total: 18.30 kcal Atomic # 7 Polarization: 44.15 SS G_CDS: -2.47 Total: 41.68 kcal Atomic # 8 Polarization: 30.01 SS G_CDS: -3.56 Total: 26.45 kcal Atomic # 14 Polarization: -11.82 SS G_CDS: 2.20 Total: -9.61 kcal Total: -88.43 -0.27 -88.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_13456056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.754 kcal (2) G-P(sol) polarization free energy of solvation -88.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds