Wall clock time and date at job start Sun Mar 7 2021 09:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47294 * 2 1 4 4 C 1.50702 * 109.47388 * 239.99571 * 2 1 3 5 5 C 1.34851 * 125.88843 * 119.95479 * 4 2 1 6 6 C 1.40888 * 107.41290 * 179.80673 * 5 4 2 7 7 C 1.34848 * 107.42187 * 0.38349 * 6 5 4 8 8 C 1.50695 * 125.89348 * 179.88290 * 7 6 5 9 9 C 1.50703 * 109.47099 * 274.69147 * 8 7 6 10 10 O 1.21279 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00074 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46813 * 35.00305 * 12 11 9 14 14 C 1.53000 * 109.46840 * 155.00031 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 18 18 N 1.46898 * 109.47006 * 179.97438 * 16 15 14 19 19 H 1.00898 * 109.48069 * 299.99968 * 18 16 15 20 20 C 1.46945 * 109.47754 * 179.97438 * 18 16 15 21 21 C 1.53073 * 109.37426 * 180.02562 * 20 18 16 22 22 O 1.43025 * 109.25574 * 57.63391 * 21 20 18 23 23 C 1.43034 * 113.65169 * 302.09384 * 22 21 20 24 24 C 1.46944 * 109.48044 * 60.01730 * 18 16 15 25 25 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 26 26 C 1.52996 * 109.47185 * 275.00149 * 12 11 9 27 27 N 1.36338 * 125.89052 * 300.00396 * 4 2 1 28 28 H 0.96700 * 113.99465 * 60.00467 * 1 2 3 29 29 H 1.09005 * 109.46937 * 120.00100 * 2 1 3 30 30 H 1.48502 * 109.99899 * 59.99720 * 3 2 1 31 31 H 1.48496 * 110.00417 * 181.31714 * 3 2 1 32 32 H 1.07998 * 126.29157 * 0.06610 * 5 4 2 33 33 H 1.08004 * 126.28558 * 180.24028 * 6 5 4 34 34 H 1.09002 * 109.47342 * 154.69073 * 8 7 6 35 35 H 1.09003 * 109.47335 * 34.68931 * 8 7 6 36 36 H 0.97002 * 119.99499 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 38 38 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 39 39 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 40 40 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 41 41 H 1.08991 * 109.48670 * 299.96673 * 20 18 16 42 42 H 1.09002 * 109.47957 * 60.02106 * 20 18 16 43 43 H 1.09002 * 109.50224 * 297.69250 * 21 20 18 44 44 H 1.09004 * 109.53967 * 177.59546 * 21 20 18 45 45 H 1.09000 * 109.51041 * 297.97248 * 23 22 21 46 46 H 1.09001 * 109.54456 * 177.86641 * 23 22 21 47 47 H 1.09001 * 109.48623 * 299.97766 * 24 18 16 48 48 H 1.09005 * 109.48579 * 60.01599 * 24 18 16 49 49 H 1.09002 * 109.47045 * 180.02562 * 25 16 15 50 50 H 1.09001 * 109.47375 * 59.99966 * 25 16 15 51 51 H 1.08992 * 109.47554 * 299.99819 * 26 12 11 52 52 H 1.09004 * 109.47108 * 60.00069 * 26 12 11 53 53 H 0.97001 * 125.63906 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9315 -0.7105 -1.2304 5 6 2.7093 -0.1725 -2.1917 6 6 2.9483 -1.1760 -3.1513 7 6 2.3004 -2.2864 -2.7443 8 6 2.2751 -3.6090 -3.4660 9 6 1.1816 -3.5945 -4.5030 10 8 0.4907 -2.6075 -4.6420 11 7 0.9716 -4.6784 -5.2761 12 6 -0.0917 -4.6645 -6.2838 13 1 -0.1764 -3.6644 -6.7088 14 6 0.2440 -5.6633 -7.3931 15 6 -0.8661 -5.6484 -8.4459 16 6 -2.1936 -6.0385 -7.7928 17 1 -2.1094 -7.0388 -7.3678 18 7 -3.2596 -6.0236 -8.8034 19 1 -3.3375 -5.0976 -9.1966 20 6 -4.5345 -6.3989 -8.1765 21 6 -5.6433 -6.3832 -9.2317 22 8 -5.2968 -7.2767 -10.2934 23 6 -4.0494 -6.9661 -10.9206 24 6 -2.9379 -6.9828 -9.8691 25 6 -2.5292 -5.0397 -6.6835 26 6 -1.4188 -5.0551 -5.6303 27 7 1.6772 -2.0077 -1.5641 28 1 -0.3932 0.4417 -0.7651 29 1 1.7924 -0.5139 0.8900 30 1 1.5615 2.4678 1.2085 31 1 3.5346 1.7703 -0.0321 32 1 3.0839 0.8400 -2.2186 33 1 3.5397 -1.0738 -4.0493 34 1 2.0868 -4.4097 -2.7508 35 1 3.2357 -3.7756 -3.9534 36 1 1.5240 -5.4680 -5.1647 37 1 1.1895 -5.3851 -7.8586 38 1 0.3287 -6.6635 -6.9681 39 1 -0.9505 -4.6482 -8.8708 40 1 -0.6273 -6.3602 -9.2360 41 1 -4.4506 -7.3995 -7.7527 42 1 -4.7740 -5.6877 -7.3859 43 1 -5.7549 -5.3736 -9.6273 44 1 -6.5820 -6.7024 -8.7789 45 1 -4.1064 -5.9766 -11.3741 46 1 -3.8338 -7.7073 -11.6903 47 1 -1.9924 -6.7052 -10.3349 48 1 -2.8543 -7.9834 -9.4446 49 1 -3.4748 -5.3179 -6.2179 50 1 -2.6135 -4.0395 -7.1084 51 1 -1.3342 -6.0552 -5.2053 52 1 -1.6579 -4.3435 -4.8400 53 1 1.1413 -2.6296 -1.0474 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:57 Heat of formation + Delta-G solvation = 34.638956 kcal Electronic energy + Delta-G solvation = -31751.712068 eV Core-core repulsion = 27515.681466 eV Total energy + Delta-G solvation = -4236.030602 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.212 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.38292 -42.36864 -40.85370 -39.35009 -37.80035 -37.56589 -34.81612 -33.27941 -33.16694 -31.96564 -31.76851 -30.81616 -29.34791 -27.94843 -26.08843 -25.29182 -23.75832 -23.54202 -23.35631 -21.77523 -21.45631 -21.37897 -20.94094 -19.01533 -18.89892 -18.39492 -17.92134 -17.76908 -17.58443 -16.99199 -16.85060 -16.54468 -16.40484 -16.25436 -16.09830 -15.51928 -15.35928 -15.18054 -14.92092 -14.70121 -14.42836 -14.23743 -14.13995 -14.10770 -13.96044 -13.90872 -13.88693 -13.58068 -13.28763 -12.94885 -12.84807 -12.78743 -12.75913 -12.54266 -12.29549 -12.14077 -12.04289 -11.88786 -11.68519 -11.44077 -11.01065 -10.97159 -10.70053 -10.08872 -9.83673 -8.99285 -5.00025 0.63719 1.07048 1.24933 1.60699 1.63231 1.85424 1.89232 2.26421 2.46765 2.47975 2.56775 2.66015 2.94975 3.13618 3.36389 3.40195 3.45590 3.62432 3.66132 3.71340 3.75742 3.78021 3.83426 3.90975 4.02648 4.07186 4.10780 4.14258 4.18057 4.23878 4.31244 4.33812 4.34524 4.45819 4.52595 4.53381 4.58447 4.60174 4.65579 4.67428 4.75705 4.77939 4.81672 4.90407 4.99709 5.02687 5.20545 5.22806 5.23293 5.25722 5.52945 5.90429 5.95473 6.08846 6.49630 6.61000 6.64526 7.25261 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.001861 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.235221 B =15042.445450 C =15842.886044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.048 4.048 3 Si 0.795 3.205 4 C -0.021 4.021 5 C -0.204 4.204 6 C -0.202 4.202 7 C 0.035 3.965 8 C -0.073 4.073 9 C 0.515 3.485 10 O -0.569 6.569 11 N -0.719 5.719 12 C 0.135 3.865 13 H 0.067 0.933 14 C -0.120 4.120 15 C -0.136 4.136 16 C 0.046 3.954 17 H 0.157 0.843 18 N -0.370 5.370 19 H 0.433 0.567 20 C -0.035 4.035 21 C 0.029 3.971 22 O -0.401 6.401 23 C 0.027 3.973 24 C -0.035 4.035 25 C -0.136 4.136 26 C -0.126 4.126 27 N -0.536 5.536 28 H 0.395 0.605 29 H 0.107 0.893 30 H -0.297 1.297 31 H -0.288 1.288 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.417 0.583 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.165 0.835 48 H 0.145 0.855 49 H 0.106 0.894 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.045 0.955 53 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 -16.564 -20.062 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.158 4.158 3 Si 0.701 3.299 4 C -0.134 4.134 5 C -0.229 4.229 6 C -0.226 4.226 7 C -0.079 4.079 8 C -0.113 4.113 9 C 0.302 3.698 10 O -0.448 6.448 11 N -0.372 5.372 12 C 0.030 3.970 13 H 0.085 0.915 14 C -0.158 4.158 15 C -0.174 4.174 16 C -0.056 4.056 17 H 0.175 0.825 18 N 0.051 4.949 19 H 0.271 0.729 20 C -0.157 4.157 21 C -0.048 4.048 22 O -0.319 6.319 23 C -0.049 4.049 24 C -0.156 4.156 25 C -0.174 4.174 26 C -0.165 4.165 27 N -0.131 5.131 28 H 0.245 0.755 29 H 0.124 0.876 30 H -0.225 1.225 31 H -0.215 1.215 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.156 0.844 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.104 0.896 44 H 0.143 0.857 45 H 0.105 0.895 46 H 0.145 0.855 47 H 0.183 0.817 48 H 0.163 0.837 49 H 0.124 0.876 50 H 0.108 0.892 51 H 0.104 0.896 52 H 0.064 0.936 53 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.083 -16.096 -19.075 27.309 hybrid contribution 0.372 -0.301 0.814 0.944 sum -10.712 -16.398 -18.261 26.778 Atomic orbital electron populations 1.86437 1.17418 1.82132 1.50624 1.24818 0.84959 1.10767 0.95300 0.93091 0.77786 0.74667 0.84401 1.20883 1.06312 0.85995 1.00214 1.20918 1.04886 1.00640 0.96452 1.20831 1.06834 0.93164 1.01814 1.19959 1.01081 0.97567 0.89264 1.20281 1.00587 0.93530 0.96900 1.20744 0.84377 0.82673 0.82047 1.90758 1.49584 1.34620 1.69805 1.45955 1.36885 1.16949 1.37417 1.21191 0.86650 1.00590 0.88545 0.91486 1.21710 0.99538 0.99904 0.94685 1.22080 0.90851 1.05580 0.98911 1.23405 0.86855 1.06480 0.88844 0.82512 1.45424 1.14594 1.19179 1.15665 0.72887 1.24552 0.81920 1.09563 0.99681 1.23289 0.98463 0.96130 0.86878 1.88322 1.39184 1.54364 1.50073 1.23317 0.81416 1.05326 0.94874 1.24585 1.04021 0.97083 0.89929 1.22031 1.00307 0.99932 0.95146 1.21808 0.93770 1.02819 0.98104 1.41853 1.41013 1.10841 1.19409 0.75488 0.87605 1.22527 1.21520 0.83599 0.84162 0.85741 0.84368 0.74598 0.90274 0.88657 0.88779 0.86314 0.83785 0.82467 0.89562 0.85730 0.89539 0.85515 0.81742 0.83735 0.87566 0.89234 0.89595 0.93640 0.74364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 6.48 12.88 -148.98 -1.92 4.56 16 2 C -0.05 0.57 3.08 71.24 0.22 0.78 16 3 Si 0.80 -9.51 30.58 68.60 2.10 -7.41 16 4 C -0.02 0.23 6.50 41.08 0.27 0.49 16 5 C -0.20 2.02 9.37 22.14 0.21 2.23 16 6 C -0.20 2.24 10.76 22.14 0.24 2.48 16 7 C 0.04 -0.53 5.66 41.08 0.23 -0.30 16 8 C -0.07 1.78 6.24 29.10 0.18 1.96 16 9 C 0.52 -11.91 7.79 87.66 0.68 -11.23 16 10 O -0.57 7.46 15.70 -3.03 -0.05 7.41 16 11 N -0.72 23.57 5.08 -442.53 -2.25 21.32 16 12 C 0.13 -5.06 2.45 44.99 0.11 -4.95 16 13 H 0.07 -2.11 7.58 -2.39 -0.02 -2.13 16 14 C -0.12 5.51 5.39 30.59 0.16 5.67 16 15 C -0.14 7.44 4.90 30.60 0.15 7.59 16 16 C 0.05 -2.69 1.62 44.92 0.07 -2.61 16 17 H 0.16 -9.55 8.14 -2.39 -0.02 -9.57 16 18 N -0.37 22.92 0.24 -870.56 -0.21 22.71 16 19 H 0.43 -28.29 8.32 -89.70 -0.75 -29.04 16 20 C -0.04 2.06 4.93 86.32 0.43 2.48 16 21 C 0.03 -1.45 6.96 72.01 0.50 -0.94 16 22 O -0.40 16.92 10.84 -148.98 -1.62 15.30 16 23 C 0.03 -1.38 6.96 71.99 0.50 -0.88 16 24 C -0.03 2.07 4.93 86.30 0.43 2.49 16 25 C -0.14 6.94 4.90 30.61 0.15 7.09 16 26 C -0.13 5.07 5.50 30.61 0.17 5.24 16 27 N -0.54 7.39 6.07 -171.12 -1.04 6.35 16 28 H 0.40 -7.26 8.70 -74.06 -0.64 -7.91 16 29 H 0.11 -1.18 7.96 -2.38 -0.02 -1.20 16 30 H -0.30 1.41 7.11 99.48 0.71 2.11 16 31 H -0.29 1.82 7.11 99.48 0.71 2.53 16 32 H 0.15 -1.77 6.22 -2.91 -0.02 -1.79 16 33 H 0.14 -1.86 8.06 -2.91 -0.02 -1.89 16 34 H 0.12 -3.66 8.14 -2.39 -0.02 -3.68 16 35 H 0.14 -3.95 8.14 -2.39 -0.02 -3.96 16 36 H 0.42 -15.89 8.60 -92.71 -0.80 -16.69 16 37 H 0.08 -3.32 8.14 -2.39 -0.02 -3.34 16 38 H 0.09 -4.57 8.14 -2.39 -0.02 -4.59 16 39 H 0.09 -5.08 8.14 -2.39 -0.02 -5.10 16 40 H 0.12 -6.94 6.29 -2.39 -0.02 -6.96 16 41 H 0.14 -8.43 8.14 -2.39 -0.02 -8.45 16 42 H 0.16 -9.55 6.15 -2.39 -0.01 -9.56 16 43 H 0.09 -4.42 8.14 -2.39 -0.02 -4.44 16 44 H 0.12 -5.81 8.14 -2.39 -0.02 -5.83 16 45 H 0.09 -4.51 8.14 -2.39 -0.02 -4.53 16 46 H 0.13 -6.06 8.14 -2.39 -0.02 -6.08 16 47 H 0.17 -10.46 6.15 -2.39 -0.01 -10.47 16 48 H 0.14 -8.65 8.14 -2.38 -0.02 -8.67 16 49 H 0.11 -5.66 6.29 -2.39 -0.01 -5.68 16 50 H 0.09 -4.47 8.14 -2.39 -0.02 -4.48 16 51 H 0.09 -3.61 8.14 -2.39 -0.02 -3.63 16 52 H 0.04 -1.37 8.14 -2.38 -0.02 -1.39 16 53 H 0.42 -7.25 8.96 -92.71 -0.83 -8.08 16 Total: 1.00 -84.35 404.96 -2.32 -86.66 By element: Atomic # 1 Polarization: -172.46 SS G_CDS: -2.03 Total: -174.50 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 4.70 Total: 17.60 kcal Atomic # 7 Polarization: 53.87 SS G_CDS: -3.50 Total: 50.38 kcal Atomic # 8 Polarization: 30.85 SS G_CDS: -3.58 Total: 27.27 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.10 Total: -7.41 kcal Total: -84.35 -2.32 -86.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.303 kcal (2) G-P(sol) polarization free energy of solvation -84.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds