Wall clock time and date at job start Sun Mar 7 2021 09:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.46755 * 2 1 4 4 C 1.50697 * 109.47023 * 119.99995 * 2 1 3 5 5 C 1.31120 * 118.54612 * 250.02088 * 4 2 1 6 6 N 1.38965 * 121.87007 * 179.64046 * 5 4 2 7 7 C 1.47023 * 118.85688 * 13.18006 * 6 5 4 8 8 C 1.50703 * 109.82390 * 196.87602 * 7 6 5 9 9 O 1.21283 * 119.99488 * 19.13649 * 8 7 6 10 10 N 1.34777 * 120.00290 * 199.14089 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53003 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47127 * 300.00125 * 14 13 11 16 16 H 1.08995 * 109.47275 * 299.99879 * 15 14 13 17 17 N 1.46905 * 109.47282 * 180.02562 * 15 14 13 18 18 H 1.00900 * 109.47693 * 299.98417 * 17 15 14 19 19 C 1.46938 * 109.48122 * 179.97438 * 17 15 14 20 20 C 1.53069 * 109.37676 * 179.97438 * 19 17 15 21 21 O 1.43040 * 109.24668 * 57.64081 * 20 19 17 22 22 C 1.43026 * 113.65473 * 302.09853 * 21 20 19 23 23 C 1.46943 * 109.47725 * 59.99727 * 17 15 14 24 24 C 1.52999 * 109.47278 * 60.00039 * 15 14 13 25 25 C 1.52994 * 109.47024 * 299.99839 * 24 15 14 26 26 C 1.53546 * 107.71614 * 316.44664 * 7 6 5 27 27 C 1.50198 * 118.54935 * 70.00153 * 4 2 1 28 28 H 0.96694 * 114.00317 * 299.99900 * 1 2 3 29 29 H 1.08996 * 109.47424 * 240.00191 * 2 1 3 30 30 H 1.48498 * 110.00249 * 299.99808 * 3 2 1 31 31 H 1.48503 * 110.00013 * 61.31925 * 3 2 1 32 32 H 1.07997 * 119.07412 * 359.59833 * 5 4 2 33 33 H 0.96996 * 120.58459 * 193.29256 * 6 5 4 34 34 H 1.08998 * 109.82333 * 76.01770 * 7 6 5 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 37 37 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 38 38 H 1.08996 * 109.47077 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47062 * 60.00488 * 14 13 11 40 40 H 1.08998 * 109.48598 * 299.96177 * 19 17 15 41 41 H 1.08997 * 109.48023 * 60.02103 * 19 17 15 42 42 H 1.08998 * 109.51282 * 297.71476 * 20 19 17 43 43 H 1.08996 * 109.54572 * 177.59590 * 20 19 17 44 44 H 1.09002 * 109.50220 * 297.96738 * 22 21 20 45 45 H 1.09004 * 109.54175 * 177.86001 * 22 21 20 46 46 H 1.09006 * 109.48746 * 299.98365 * 23 17 15 47 47 H 1.08998 * 109.48219 * 60.03857 * 23 17 15 48 48 H 1.08996 * 109.47245 * 179.97438 * 24 15 14 49 49 H 1.09003 * 109.46809 * 59.99699 * 24 15 14 50 50 H 1.08994 * 109.47599 * 300.00048 * 25 24 15 51 51 H 1.08998 * 109.47530 * 179.97438 * 25 24 15 52 52 H 1.08997 * 109.62489 * 180.64263 * 26 7 6 53 53 H 1.09000 * 109.62009 * 301.01321 * 26 7 6 54 54 H 1.09006 * 109.33156 * 79.81309 * 27 4 2 55 55 H 1.09009 * 109.32925 * 320.33559 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.5112 -0.0027 2.1697 6 7 2.9930 -0.5855 3.3356 7 6 3.1168 -2.0492 3.3986 8 6 3.2499 -2.4895 4.8337 9 8 2.9038 -1.7490 5.7297 10 7 3.7535 -3.7061 5.1214 11 6 3.8772 -4.1364 6.5163 12 1 4.1328 -3.2796 7.1395 13 6 2.5481 -4.7307 6.9865 14 6 2.6775 -5.1807 8.4431 15 6 3.7769 -6.2388 8.5541 16 1 3.5211 -7.0955 7.9306 17 7 3.9008 -6.6714 9.9526 18 1 4.1377 -5.8787 10.5302 19 6 4.9563 -7.6881 10.0594 20 6 5.0838 -8.1366 11.5173 21 8 3.8227 -8.6391 11.9681 22 6 2.7562 -7.6920 11.8612 23 6 2.6242 -7.2423 10.4038 24 6 5.1061 -5.6446 8.0840 25 6 4.9767 -5.1946 6.6274 26 6 1.8452 -2.6524 2.7847 27 6 1.7452 -2.1977 1.3269 28 1 -0.3933 0.4416 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5878 2.4586 1.2243 32 1 2.6181 1.0632 2.0332 33 1 3.2419 -0.0364 4.0955 34 1 3.9898 -2.3711 2.8309 35 1 4.0300 -4.2984 4.4047 36 1 1.7647 -3.9770 6.9069 37 1 2.2925 -5.5875 6.3632 38 1 1.7305 -5.6036 8.7782 39 1 2.9333 -4.3240 9.0667 40 1 4.7002 -8.5449 9.4362 41 1 5.9036 -7.2651 9.7251 42 1 5.3791 -7.2883 12.1347 43 1 5.8364 -8.9214 11.5930 44 1 2.9720 -6.8285 12.4904 45 1 1.8239 -8.1546 12.1853 46 1 1.8407 -6.4886 10.3251 47 1 2.3687 -8.0992 9.7804 48 1 5.8895 -6.3983 8.1635 49 1 5.3619 -4.7879 8.7076 50 1 4.7209 -6.0512 6.0038 51 1 5.9234 -4.7709 6.2925 52 1 1.8994 -3.7403 2.8260 53 1 0.9722 -2.3081 3.3392 54 1 2.5161 -2.6967 0.7396 55 1 0.7649 -2.4650 0.9321 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_15413834.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:01 Heat of formation + Delta-G solvation = 13.489978 kcal Electronic energy + Delta-G solvation = -32692.805823 eV Core-core repulsion = 28428.546654 eV Total energy + Delta-G solvation = -4264.259169 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.227 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.38474 -41.51895 -39.98002 -39.21218 -37.78914 -37.37679 -34.95960 -33.28205 -33.23428 -33.05459 -31.77430 -30.71986 -28.40145 -27.19589 -26.09272 -25.46688 -24.02045 -23.62716 -23.52656 -23.16107 -21.61523 -21.38706 -19.45958 -19.17964 -18.89525 -18.33433 -17.98050 -17.77896 -17.54772 -16.99283 -16.89637 -16.58564 -16.45148 -16.11731 -16.05468 -15.76608 -15.56098 -15.32708 -15.23535 -14.94859 -14.58124 -14.30634 -14.20802 -14.09880 -13.94815 -13.91262 -13.85430 -13.29599 -13.19256 -12.97118 -12.93589 -12.88430 -12.77283 -12.56232 -12.38092 -12.29585 -11.99011 -11.89063 -11.72284 -11.70122 -11.45395 -11.26528 -11.01090 -10.91203 -10.36773 -10.17701 -8.49535 -4.96215 0.63614 1.30181 1.35733 1.43348 1.51802 1.87598 1.97274 2.47661 2.54108 2.61619 2.66140 2.94866 3.13295 3.35862 3.39675 3.47731 3.56179 3.66390 3.69301 3.73188 3.78924 3.83515 3.88373 3.90824 4.03588 4.05994 4.10604 4.11875 4.22101 4.30346 4.30864 4.33507 4.43658 4.51337 4.52892 4.57995 4.59019 4.62645 4.65282 4.66954 4.76370 4.77667 4.80851 4.90682 4.99259 5.02260 5.02656 5.18034 5.18626 5.21816 5.26414 5.44593 5.56469 5.90265 6.21550 6.42153 6.56826 6.77154 7.08828 Molecular weight = 353.23amu Principal moments of inertia in cm(-1) A = 0.033383 B = 0.001756 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.544499 B =15941.103136 C =16135.195498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.055 4.055 3 Si 0.742 3.258 4 C -0.278 4.278 5 C 0.136 3.864 6 N -0.737 5.737 7 C 0.133 3.867 8 C 0.517 3.483 9 O -0.572 6.572 10 N -0.711 5.711 11 C 0.134 3.866 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.136 4.136 15 C 0.045 3.955 16 H 0.158 0.842 17 N -0.370 5.370 18 H 0.433 0.567 19 C -0.034 4.034 20 C 0.027 3.973 21 O -0.401 6.401 22 C 0.029 3.971 23 C -0.035 4.035 24 C -0.136 4.136 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.057 4.057 28 H 0.381 0.619 29 H 0.114 0.886 30 H -0.318 1.318 31 H -0.289 1.289 32 H 0.136 0.864 33 H 0.406 0.594 34 H 0.114 0.886 35 H 0.419 0.581 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.158 0.842 47 H 0.144 0.856 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.080 0.920 52 H 0.105 0.895 53 H 0.050 0.950 54 H 0.083 0.917 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -19.389 19.753 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.166 4.166 3 Si 0.651 3.349 4 C -0.289 4.289 5 C 0.015 3.985 6 N -0.370 5.370 7 C 0.024 3.976 8 C 0.303 3.697 9 O -0.450 6.450 10 N -0.363 5.363 11 C 0.030 3.970 12 H 0.088 0.912 13 C -0.167 4.167 14 C -0.174 4.174 15 C -0.057 4.057 16 H 0.175 0.825 17 N 0.051 4.949 18 H 0.271 0.729 19 C -0.156 4.156 20 C -0.050 4.050 21 O -0.320 6.320 22 C -0.048 4.048 23 C -0.157 4.157 24 C -0.174 4.174 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.094 4.094 28 H 0.229 0.771 29 H 0.132 0.868 30 H -0.247 1.247 31 H -0.217 1.217 32 H 0.153 0.847 33 H 0.243 0.757 34 H 0.132 0.868 35 H 0.256 0.744 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.104 0.896 43 H 0.145 0.855 44 H 0.104 0.896 45 H 0.142 0.858 46 H 0.175 0.825 47 H 0.162 0.838 48 H 0.137 0.863 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.099 0.901 52 H 0.123 0.877 53 H 0.069 0.931 54 H 0.101 0.899 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.551 -18.906 19.766 28.972 hybrid contribution -1.272 1.067 0.292 1.685 sum 8.280 -17.839 20.058 28.091 Atomic orbital electron populations 1.86556 1.19855 1.80083 1.50015 1.24787 0.82521 1.09500 0.99767 0.94664 0.90964 0.73948 0.75312 1.20886 1.11197 0.97458 0.99318 1.20557 0.93951 0.97132 0.86820 1.44374 1.72455 1.04976 1.15147 1.21196 1.00806 0.82661 0.92930 1.20673 0.76205 0.82171 0.90641 1.90734 1.50137 1.54886 1.49291 1.45903 1.63918 1.16356 1.10092 1.21256 0.96122 0.97871 0.81742 0.91176 1.21816 0.96933 1.01380 0.96530 1.22019 0.99127 0.98634 0.97639 1.23416 0.99511 1.02657 0.80067 0.82458 1.45424 1.15335 1.17785 1.16316 0.72900 1.24593 0.94428 0.94678 1.01890 1.23331 0.86968 1.03108 0.91548 1.88324 1.18104 1.40203 1.85333 1.23292 0.93235 0.94835 0.93417 1.24555 0.85834 1.05726 0.99593 1.22077 0.95001 1.03575 0.96744 1.21716 0.98191 0.98447 0.97499 1.21787 0.95681 1.01800 0.96270 1.19995 1.02335 0.91469 0.95602 0.77062 0.86821 1.24729 1.21675 0.84678 0.75736 0.86835 0.74394 0.93565 0.89401 0.87573 0.89204 0.83708 0.81698 0.89554 0.85533 0.89591 0.85766 0.82479 0.83757 0.86266 0.88740 0.88505 0.90119 0.87681 0.93083 0.89872 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 4.35 12.88 -148.98 -1.92 2.43 16 2 C -0.06 0.68 2.81 71.23 0.20 0.88 16 3 Si 0.74 -8.88 29.96 68.60 2.05 -6.83 16 4 C -0.28 4.25 5.37 -16.77 -0.09 4.16 16 5 C 0.14 -2.20 9.62 83.40 0.80 -1.39 16 6 N -0.74 13.21 5.47 -328.97 -1.80 11.41 16 7 C 0.13 -3.08 3.36 44.33 0.15 -2.93 16 8 C 0.52 -12.36 7.05 87.66 0.62 -11.74 16 9 O -0.57 8.63 15.75 -3.04 -0.05 8.58 16 10 N -0.71 23.91 5.08 -442.53 -2.25 21.67 16 11 C 0.13 -5.22 2.45 44.99 0.11 -5.11 16 12 H 0.07 -2.33 7.58 -2.39 -0.02 -2.35 16 13 C -0.13 5.26 5.49 30.60 0.17 5.42 16 14 C -0.14 7.05 4.90 30.59 0.15 7.20 16 15 C 0.05 -2.68 1.61 44.91 0.07 -2.61 16 16 H 0.16 -9.71 8.14 -2.39 -0.02 -9.73 16 17 N -0.37 23.14 0.24 -870.44 -0.21 22.93 16 18 H 0.43 -28.55 8.32 -89.69 -0.75 -29.30 16 19 C -0.03 2.07 4.93 86.32 0.43 2.49 16 20 C 0.03 -1.38 6.96 72.01 0.50 -0.88 16 21 O -0.40 17.04 10.84 -148.98 -1.62 15.42 16 22 C 0.03 -1.45 6.96 72.01 0.50 -0.94 16 23 C -0.04 2.07 4.94 86.33 0.43 2.49 16 24 C -0.14 7.57 4.90 30.59 0.15 7.72 16 25 C -0.12 5.66 5.39 30.59 0.16 5.82 16 26 C -0.12 2.59 5.47 30.79 0.17 2.76 16 27 C -0.06 1.03 5.85 29.70 0.17 1.21 16 28 H 0.38 -4.89 8.70 -74.06 -0.64 -5.53 16 29 H 0.11 -1.51 7.96 -2.39 -0.02 -1.53 16 30 H -0.32 0.62 7.11 99.48 0.71 1.33 16 31 H -0.29 2.39 6.84 99.48 0.68 3.07 16 32 H 0.14 -2.28 4.30 -2.91 -0.01 -2.29 16 33 H 0.41 -6.89 8.10 -92.71 -0.75 -7.65 16 34 H 0.11 -3.12 8.14 -2.39 -0.02 -3.14 16 35 H 0.42 -16.20 8.60 -92.71 -0.80 -17.00 16 36 H 0.05 -1.43 8.14 -2.39 -0.02 -1.45 16 37 H 0.09 -3.78 8.14 -2.39 -0.02 -3.80 16 38 H 0.11 -5.72 6.28 -2.39 -0.02 -5.74 16 39 H 0.09 -4.57 8.14 -2.39 -0.02 -4.59 16 40 H 0.14 -8.74 8.14 -2.39 -0.02 -8.76 16 41 H 0.17 -10.59 6.15 -2.39 -0.01 -10.60 16 42 H 0.09 -4.53 8.14 -2.39 -0.02 -4.55 16 43 H 0.13 -6.09 8.14 -2.39 -0.02 -6.11 16 44 H 0.09 -4.43 8.14 -2.39 -0.02 -4.45 16 45 H 0.12 -5.81 8.14 -2.38 -0.02 -5.83 16 46 H 0.16 -9.61 6.15 -2.38 -0.01 -9.62 16 47 H 0.14 -8.50 8.14 -2.39 -0.02 -8.52 16 48 H 0.12 -7.08 6.29 -2.39 -0.02 -7.09 16 49 H 0.09 -5.20 8.14 -2.39 -0.02 -5.22 16 50 H 0.10 -4.76 8.14 -2.39 -0.02 -4.78 16 51 H 0.08 -3.49 8.14 -2.39 -0.02 -3.51 16 52 H 0.10 -2.96 8.14 -2.39 -0.02 -2.98 16 53 H 0.05 -0.85 8.14 -2.39 -0.02 -0.87 16 54 H 0.08 -1.74 8.14 -2.38 -0.02 -1.76 16 55 H 0.06 -0.93 8.14 -2.38 -0.02 -0.95 16 Total: 1.00 -82.04 407.22 -3.10 -85.14 By element: Atomic # 1 Polarization: -173.31 SS G_CDS: -2.01 Total: -175.32 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 4.69 Total: 14.56 kcal Atomic # 7 Polarization: 60.26 SS G_CDS: -4.26 Total: 56.01 kcal Atomic # 8 Polarization: 30.02 SS G_CDS: -3.58 Total: 26.44 kcal Atomic # 14 Polarization: -8.88 SS G_CDS: 2.05 Total: -6.83 kcal Total: -82.04 -3.10 -85.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_15413834.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.628 kcal (2) G-P(sol) polarization free energy of solvation -82.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds