Wall clock time and date at job start Sun Mar 7 2021 09:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47428 * 2 1 4 4 C 1.50697 * 109.47560 * 120.00094 * 2 1 3 5 5 C 1.31117 * 118.55136 * 249.97962 * 4 2 1 6 6 N 1.38921 * 121.85150 * 180.42625 * 5 4 2 7 7 C 1.47026 * 118.88299 * 346.68100 * 6 5 4 8 8 C 1.53541 * 107.66116 * 43.66442 * 7 6 5 9 9 C 1.50209 * 118.54794 * 69.99737 * 4 2 1 10 10 C 1.50696 * 109.32860 * 39.66441 * 9 4 2 11 11 O 1.21287 * 119.99595 * 120.86062 * 10 9 4 12 12 N 1.34780 * 120.00373 * 300.87105 * 10 9 4 13 13 C 1.46506 * 120.00088 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46872 * 324.99405 * 13 12 10 15 15 C 1.52997 * 109.47277 * 84.99368 * 13 12 10 16 16 C 1.52996 * 109.47165 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 300.00293 * 16 15 13 18 18 H 1.09000 * 109.46986 * 299.99742 * 17 16 15 19 19 N 1.46896 * 109.47250 * 180.02562 * 17 16 15 20 20 H 1.00906 * 109.47898 * 299.97717 * 19 17 16 21 21 C 1.46945 * 109.47921 * 179.97438 * 19 17 16 22 22 C 1.53070 * 109.37562 * 179.97438 * 21 19 17 23 23 O 1.43037 * 109.25082 * 57.64183 * 22 21 19 24 24 C 1.43030 * 113.65082 * 302.09776 * 23 22 21 25 25 C 1.46933 * 109.48425 * 59.99604 * 19 17 16 26 26 C 1.52997 * 109.47415 * 59.99860 * 17 16 15 27 27 C 1.52999 * 109.46691 * 204.99775 * 13 12 10 28 28 H 0.96697 * 113.99625 * 299.99565 * 1 2 3 29 29 H 1.09000 * 109.47165 * 240.00276 * 2 1 3 30 30 H 1.48500 * 109.99740 * 300.00474 * 3 2 1 31 31 H 1.48497 * 109.99953 * 61.31804 * 3 2 1 32 32 H 1.07997 * 119.06979 * 0.42499 * 5 4 2 33 33 H 0.96998 * 120.55885 * 166.66635 * 6 5 4 34 34 H 1.09005 * 109.82225 * 284.12430 * 7 6 5 35 35 H 1.08998 * 109.82084 * 163.20646 * 7 6 5 36 36 H 1.09001 * 109.62399 * 179.32465 * 8 7 6 37 37 H 1.09004 * 109.77142 * 58.85972 * 8 7 6 38 38 H 1.09002 * 109.18659 * 280.10171 * 9 4 2 39 39 H 0.97000 * 119.99750 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.47140 * 60.00200 * 15 13 12 41 41 H 1.09001 * 109.47375 * 300.00183 * 15 13 12 42 42 H 1.08992 * 109.47534 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47134 * 59.99508 * 16 15 13 44 44 H 1.08991 * 109.48542 * 299.95543 * 21 19 17 45 45 H 1.08999 * 109.48561 * 60.02205 * 21 19 17 46 46 H 1.08999 * 109.51056 * 297.70976 * 22 21 19 47 47 H 1.09001 * 109.50767 * 177.57324 * 22 21 19 48 48 H 1.09008 * 109.50483 * 297.96707 * 24 23 22 49 49 H 1.09001 * 109.54583 * 177.85797 * 24 23 22 50 50 H 1.09003 * 109.48579 * 299.98418 * 25 19 17 51 51 H 1.08999 * 109.48597 * 60.03549 * 25 19 17 52 52 H 1.09001 * 109.46922 * 180.02562 * 26 17 16 53 53 H 1.09000 * 109.47140 * 59.99976 * 26 17 16 54 54 H 1.08993 * 109.47839 * 59.99891 * 27 13 12 55 55 H 1.09000 * 109.47160 * 299.99453 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.5121 -0.0029 2.1693 6 7 3.0081 -0.5883 3.3274 7 6 2.6240 -1.9716 3.6446 8 6 2.7182 -2.7900 2.3489 9 6 1.7452 -2.1978 1.3268 10 6 1.9982 -2.8206 -0.0219 11 8 2.8697 -3.6542 -0.1509 12 7 1.2563 -2.4512 -1.0847 13 6 1.5019 -3.0572 -2.3957 14 1 2.5684 -3.2495 -2.5130 15 6 0.7315 -4.3748 -2.5010 16 6 0.9885 -5.0080 -3.8699 17 6 0.5190 -4.0533 -4.9695 18 1 -0.5475 -3.8609 -4.8527 19 7 0.7652 -4.6614 -6.2839 20 1 1.7524 -4.8396 -6.3926 21 6 0.3138 -3.7449 -7.3401 22 6 0.5720 -4.3805 -8.7084 23 8 -0.1053 -5.6384 -8.7795 24 6 0.2835 -6.5580 -7.7554 25 6 0.0250 -5.9266 -6.3849 26 6 1.2895 -2.7357 -4.8643 27 6 1.0320 -2.1023 -3.4949 28 1 -0.3932 0.4416 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5880 2.4585 1.2242 32 1 2.6075 1.0648 2.0385 33 1 3.5980 -0.0928 3.9167 34 1 1.6017 -1.9940 4.0224 35 1 3.3038 -2.3820 4.3913 36 1 2.4506 -3.8272 2.5508 37 1 3.7341 -2.7437 1.9566 38 1 0.7222 -2.4114 1.6367 39 1 0.5591 -1.7847 -0.9814 40 1 -0.3350 -4.1825 -2.3837 41 1 1.0662 -5.0551 -1.7179 42 1 0.4393 -5.9464 -3.9451 43 1 2.0550 -5.2002 -3.9868 44 1 -0.7527 -3.5530 -7.2236 45 1 0.8628 -2.8062 -7.2661 46 1 1.6427 -4.5356 -8.8416 47 1 0.1988 -3.7213 -9.4922 48 1 1.3443 -6.7877 -7.8560 49 1 -0.2980 -7.4753 -7.8491 50 1 0.3595 -6.6071 -5.6019 51 1 -1.0415 -5.7342 -6.2685 52 1 0.9546 -2.0555 -5.6474 53 1 2.3560 -2.9281 -4.9811 54 1 1.5808 -1.1636 -3.4200 55 1 -0.0345 -1.9100 -3.3777 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_15608500.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:05 Heat of formation + Delta-G solvation = 24.515698 kcal Electronic energy + Delta-G solvation = -33977.827761 eV Core-core repulsion = 29714.046703 eV Total energy + Delta-G solvation = -4263.781058 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.227 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.38367 -41.67991 -39.85834 -39.04763 -37.90741 -37.44335 -34.83057 -33.45570 -33.27488 -32.74588 -31.77490 -30.65488 -28.26391 -27.22982 -26.08882 -25.82404 -23.77023 -23.58764 -23.32147 -23.16115 -21.58552 -21.36575 -19.37863 -19.08448 -18.86720 -18.32317 -17.95220 -17.75842 -17.60953 -17.21341 -16.98600 -16.65713 -16.45074 -16.12126 -16.03171 -15.63406 -15.42379 -15.39760 -15.14138 -14.72519 -14.60277 -14.33456 -14.24255 -14.09757 -13.98594 -13.91466 -13.69871 -13.24899 -13.20112 -12.94714 -12.90525 -12.76687 -12.73180 -12.50808 -12.34064 -12.29006 -11.98825 -11.88359 -11.74455 -11.65968 -11.45455 -11.40316 -11.00304 -10.77981 -10.48680 -9.93030 -8.50920 -4.91311 0.63685 1.20181 1.32593 1.54163 1.69496 1.93330 2.25664 2.48253 2.55855 2.61368 2.66099 2.95695 3.13866 3.33176 3.37792 3.40208 3.61570 3.64675 3.71334 3.77551 3.81354 3.83173 3.91667 3.96469 4.06108 4.10476 4.12242 4.18367 4.23990 4.25961 4.31068 4.34677 4.35931 4.53102 4.53801 4.54308 4.58345 4.64406 4.65965 4.68897 4.75393 4.77139 4.80085 4.83213 4.90187 4.99059 5.01590 5.16624 5.21194 5.22784 5.24143 5.38846 5.56845 5.90824 6.26455 6.44146 6.62882 6.88123 7.26174 Molecular weight = 353.23amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002586 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.387075 B =10826.407667 C =11893.383894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.058 4.058 3 Si 0.725 3.275 4 C -0.295 4.295 5 C 0.154 3.846 6 N -0.747 5.747 7 C 0.119 3.881 8 C -0.118 4.118 9 C -0.037 4.037 10 C 0.528 3.472 11 O -0.577 6.577 12 N -0.723 5.723 13 C 0.128 3.872 14 H 0.076 0.924 15 C -0.127 4.127 16 C -0.133 4.133 17 C 0.044 3.956 18 H 0.153 0.847 19 N -0.367 5.367 20 H 0.435 0.565 21 C -0.036 4.036 22 C 0.029 3.971 23 O -0.401 6.401 24 C 0.030 3.970 25 C -0.036 4.036 26 C -0.134 4.134 27 C -0.124 4.124 28 H 0.390 0.610 29 H 0.127 0.873 30 H -0.298 1.298 31 H -0.290 1.290 32 H 0.142 0.858 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.418 0.582 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.165 0.835 46 H 0.088 0.912 47 H 0.126 0.874 48 H 0.088 0.912 49 H 0.125 0.875 50 H 0.159 0.841 51 H 0.142 0.858 52 H 0.118 0.882 53 H 0.100 0.900 54 H 0.078 0.922 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 -6.216 -16.511 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.169 4.169 3 Si 0.633 3.367 4 C -0.306 4.306 5 C 0.031 3.969 6 N -0.377 5.377 7 C -0.006 4.006 8 C -0.157 4.157 9 C -0.058 4.058 10 C 0.316 3.684 11 O -0.457 6.457 12 N -0.379 5.379 13 C 0.024 3.976 14 H 0.094 0.906 15 C -0.166 4.166 16 C -0.172 4.172 17 C -0.058 4.058 18 H 0.171 0.829 19 N 0.054 4.946 20 H 0.273 0.727 21 C -0.158 4.158 22 C -0.048 4.048 23 O -0.320 6.320 24 C -0.047 4.047 25 C -0.158 4.158 26 C -0.172 4.172 27 C -0.163 4.163 28 H 0.240 0.760 29 H 0.145 0.855 30 H -0.225 1.225 31 H -0.218 1.218 32 H 0.159 0.841 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.260 0.740 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.161 0.839 45 H 0.183 0.817 46 H 0.106 0.894 47 H 0.144 0.856 48 H 0.106 0.894 49 H 0.143 0.857 50 H 0.177 0.823 51 H 0.160 0.840 52 H 0.137 0.863 53 H 0.119 0.881 54 H 0.097 0.903 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.636 -6.399 -17.237 18.575 hybrid contribution -0.662 0.426 1.462 1.660 sum -3.298 -5.974 -15.776 17.188 Atomic orbital electron populations 1.86321 1.18422 1.80203 1.50760 1.24925 0.83537 1.09261 0.99198 0.94297 0.91569 0.74304 0.76556 1.20427 1.17037 0.93593 0.99532 1.20746 0.92721 0.96984 0.86457 1.44727 1.53855 1.14662 1.24429 1.21680 1.01127 0.81370 0.96423 1.21658 0.99573 0.99305 0.95141 1.19650 1.01150 0.92818 0.92215 1.20681 0.80300 0.80670 0.86786 1.90685 1.34325 1.34813 1.85888 1.46673 1.38235 1.44366 1.08644 1.21288 1.00649 0.93411 0.82290 0.90556 1.21804 1.01318 0.96147 0.97332 1.22014 1.04553 0.98745 0.91839 1.23388 1.06919 0.95407 0.80041 0.82924 1.45389 1.19820 1.15085 1.14345 0.72743 1.24605 1.08327 0.96128 0.86713 1.23323 0.99579 0.85529 0.96364 1.88321 1.65825 1.25642 1.52179 1.23296 1.03618 0.93892 0.83867 1.24571 1.02626 0.85681 1.02951 1.22080 1.02509 0.94243 0.98373 1.21747 1.03449 0.98462 0.92611 0.76002 0.85538 1.22546 1.21767 0.84107 0.75217 0.91723 0.88741 0.90642 0.91962 0.88444 0.74036 0.90302 0.93233 0.87378 0.88717 0.83945 0.81741 0.89359 0.85566 0.89405 0.85709 0.82327 0.83967 0.86342 0.88127 0.90298 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 12.75 11.40 -148.98 -1.70 11.06 16 2 C -0.06 1.32 1.69 71.23 0.12 1.44 16 3 Si 0.72 -14.95 29.97 68.60 2.06 -12.90 16 4 C -0.29 5.93 5.03 -16.76 -0.08 5.84 16 5 C 0.15 -3.03 9.61 83.41 0.80 -2.23 16 6 N -0.75 14.65 5.83 -345.91 -2.02 12.64 16 7 C 0.12 -2.29 7.16 86.46 0.62 -1.67 16 8 C -0.12 1.95 4.91 30.79 0.15 2.10 16 9 C -0.04 0.68 2.75 -12.43 -0.03 0.65 16 10 C 0.53 -9.38 6.81 87.66 0.60 -8.78 16 11 O -0.58 6.06 15.46 -3.05 -0.05 6.01 16 12 N -0.72 18.49 3.38 -442.52 -1.49 17.00 16 13 C 0.13 -4.24 2.45 44.99 0.11 -4.13 16 14 H 0.08 -2.23 7.58 -2.39 -0.02 -2.25 16 15 C -0.13 4.64 5.49 30.59 0.17 4.81 16 16 C -0.13 6.52 4.90 30.59 0.15 6.67 16 17 C 0.04 -2.48 1.61 44.92 0.07 -2.41 16 18 H 0.15 -8.79 8.14 -2.39 -0.02 -8.81 16 19 N -0.37 22.21 0.24 -870.47 -0.21 22.00 16 20 H 0.43 -27.94 8.32 -89.69 -0.75 -28.69 16 21 C -0.04 2.09 4.93 86.32 0.43 2.52 16 22 C 0.03 -1.42 6.96 72.01 0.50 -0.91 16 23 O -0.40 16.54 10.84 -148.98 -1.62 14.92 16 24 C 0.03 -1.46 6.96 72.01 0.50 -0.96 16 25 C -0.04 2.07 4.94 86.33 0.43 2.50 16 26 C -0.13 6.95 4.90 30.61 0.15 7.10 16 27 C -0.12 5.09 5.40 30.61 0.17 5.26 16 28 H 0.39 -10.16 8.70 -74.06 -0.64 -10.80 16 29 H 0.13 -3.12 5.29 -2.39 -0.01 -3.13 16 30 H -0.30 4.09 7.11 99.48 0.71 4.79 16 31 H -0.29 4.44 6.82 99.48 0.68 5.12 16 32 H 0.14 -3.07 4.31 -2.91 -0.01 -3.09 16 33 H 0.41 -9.19 8.96 -92.71 -0.83 -10.02 16 34 H 0.06 -1.26 8.14 -2.38 -0.02 -1.28 16 35 H 0.09 -1.99 8.14 -2.39 -0.02 -2.01 16 36 H 0.07 -1.19 8.14 -2.39 -0.02 -1.21 16 37 H 0.06 -0.75 7.76 -2.38 -0.02 -0.77 16 38 H 0.10 -1.89 8.14 -2.39 -0.02 -1.91 16 39 H 0.42 -11.00 5.12 -92.71 -0.47 -11.47 16 40 H 0.08 -2.92 8.14 -2.39 -0.02 -2.94 16 41 H 0.05 -1.36 8.14 -2.39 -0.02 -1.38 16 42 H 0.11 -5.58 6.28 -2.39 -0.02 -5.60 16 43 H 0.09 -4.62 8.14 -2.39 -0.02 -4.64 16 44 H 0.14 -8.23 8.14 -2.39 -0.02 -8.25 16 45 H 0.17 -10.17 6.15 -2.39 -0.01 -10.19 16 46 H 0.09 -4.54 8.14 -2.39 -0.02 -4.56 16 47 H 0.13 -5.89 8.14 -2.39 -0.02 -5.91 16 48 H 0.09 -4.45 8.14 -2.38 -0.02 -4.47 16 49 H 0.13 -5.71 8.14 -2.39 -0.02 -5.73 16 50 H 0.16 -9.46 6.15 -2.39 -0.01 -9.47 16 51 H 0.14 -8.08 8.14 -2.39 -0.02 -8.10 16 52 H 0.12 -6.60 6.29 -2.39 -0.02 -6.62 16 53 H 0.10 -5.28 8.14 -2.39 -0.02 -5.30 16 54 H 0.08 -2.95 8.14 -2.39 -0.02 -2.97 16 55 H 0.08 -3.51 8.14 -2.39 -0.02 -3.52 16 Total: 1.00 -74.69 396.87 -1.95 -76.63 By element: Atomic # 1 Polarization: -163.39 SS G_CDS: -1.76 Total: -165.16 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 4.84 Total: 17.80 kcal Atomic # 7 Polarization: 55.35 SS G_CDS: -3.72 Total: 51.63 kcal Atomic # 8 Polarization: 35.35 SS G_CDS: -3.36 Total: 31.99 kcal Atomic # 14 Polarization: -14.95 SS G_CDS: 2.06 Total: -12.90 kcal Total: -74.69 -1.95 -76.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_15608500.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.150 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds