Wall clock time and date at job start Sun Mar 7 2021 09:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33816 * 122.44884 * 2 1 4 4 C 1.50706 * 124.52398 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46995 * 329.72320 * 4 3 2 6 6 Si 1.86293 * 109.47210 * 209.72342 * 4 3 2 7 7 S 1.70612 * 110.95696 * 179.75221 * 3 2 1 8 8 C 1.75831 * 91.56473 * 0.22833 * 7 3 2 9 9 C 1.46577 * 125.46180 * 179.97438 * 8 7 3 10 10 O 1.21708 * 120.00100 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00290 * 0.02564 * 9 8 7 12 12 C 1.46491 * 120.00304 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47540 * 35.00538 * 12 11 9 14 14 C 1.53008 * 109.47161 * 154.99960 * 12 11 9 15 15 C 1.53005 * 109.47034 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.46921 * 299.99935 * 15 14 12 17 17 H 1.09003 * 109.47705 * 299.99991 * 16 15 14 18 18 N 1.46896 * 109.46939 * 179.97438 * 16 15 14 19 19 H 1.00904 * 109.48439 * 300.00131 * 18 16 15 20 20 C 1.46947 * 109.48092 * 179.97438 * 18 16 15 21 21 C 1.53070 * 109.37913 * 180.02562 * 20 18 16 22 22 O 1.43038 * 109.25585 * 57.63072 * 21 20 18 23 23 C 1.43040 * 113.64762 * 302.09766 * 22 21 20 24 24 C 1.46948 * 109.47943 * 60.02051 * 18 16 15 25 25 C 1.53008 * 109.47213 * 60.00175 * 16 15 14 26 26 C 1.52995 * 109.47155 * 299.99813 * 25 16 15 27 27 C 1.36649 * 109.08172 * 0.02562 * 8 7 3 28 28 H 1.08997 * 109.47567 * 90.00024 * 1 2 3 29 29 H 1.08996 * 109.47028 * 210.00178 * 1 2 3 30 30 H 1.09000 * 109.47183 * 329.99383 * 1 2 3 31 31 H 1.08997 * 109.46819 * 89.71811 * 4 3 2 32 32 H 0.96703 * 113.99820 * 300.00222 * 5 4 3 33 33 H 1.48505 * 110.00052 * 179.97438 * 6 4 3 34 34 H 1.48499 * 110.00222 * 301.31653 * 6 4 3 35 35 H 0.97008 * 119.99474 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.46834 * 300.00090 * 14 12 11 37 37 H 1.08997 * 109.46533 * 60.00330 * 14 12 11 38 38 H 1.08998 * 109.47025 * 59.99950 * 15 14 12 39 39 H 1.08999 * 109.46966 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.48526 * 299.96292 * 20 18 16 41 41 H 1.09000 * 109.48308 * 60.01958 * 20 18 16 42 42 H 1.09000 * 109.50372 * 297.70190 * 21 20 18 43 43 H 1.08995 * 109.50973 * 177.56489 * 21 20 18 44 44 H 1.08993 * 109.50905 * 297.97458 * 23 22 21 45 45 H 1.09003 * 109.50483 * 177.83382 * 23 22 21 46 46 H 1.09000 * 109.48112 * 299.98097 * 24 18 16 47 47 H 1.08997 * 109.48293 * 60.01660 * 24 18 16 48 48 H 1.09003 * 109.46421 * 59.99914 * 25 16 15 49 49 H 1.09003 * 109.46834 * 179.97438 * 25 16 15 50 50 H 1.08998 * 109.46917 * 300.00058 * 26 25 16 51 51 H 1.08999 * 109.47087 * 179.97438 * 26 25 16 52 52 H 1.07995 * 123.35415 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 6 1.6354 2.5162 0.0006 5 8 0.3780 2.4996 -0.6782 6 14 2.7959 3.6846 -0.8704 7 16 3.8968 0.7893 0.0069 8 6 3.5937 -0.9426 0.0028 9 6 4.6231 -1.9861 0.0052 10 8 4.3002 -3.1596 0.0015 11 7 5.9273 -1.6462 0.0115 12 6 6.9561 -2.6890 0.0133 13 1 6.6146 -3.5375 -0.5797 14 6 8.2476 -2.1325 -0.5896 15 6 9.3219 -3.2219 -0.5883 16 6 9.5847 -3.6772 0.8486 17 1 9.9266 -2.8291 1.4418 18 7 10.6157 -4.7236 0.8498 19 1 10.2990 -5.5088 0.3008 20 6 10.8687 -5.1607 2.2297 21 6 11.9436 -6.2504 2.2284 22 8 13.1302 -5.7418 1.6124 23 6 12.9291 -5.2809 0.2733 24 6 11.8564 -4.1897 0.2710 25 6 8.2932 -4.2338 1.4515 26 6 7.2189 -3.1445 1.4501 27 6 2.2447 -1.1601 -0.0041 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.4890 2.8483 1.0283 32 1 0.4326 2.2130 -1.6002 33 1 2.2257 5.0558 -0.8772 34 1 4.1174 3.6870 -0.1930 35 1 6.1847 -0.7109 0.0148 36 1 8.0604 -1.8084 -1.6134 37 1 8.5891 -1.2841 0.0034 38 1 8.9800 -4.0700 -1.1814 39 1 10.2421 -2.8253 -1.0173 40 1 11.2119 -4.3128 2.8226 41 1 9.9489 -5.5570 2.6599 42 1 11.5851 -7.1146 1.6692 43 1 12.1640 -6.5456 3.2542 44 1 12.6042 -6.1119 -0.3527 45 1 13.8627 -4.8745 -0.1158 46 1 11.6698 -3.8653 -0.7527 47 1 12.1990 -3.3420 0.8644 48 1 7.9514 -5.0820 0.8582 49 1 8.4806 -4.5586 2.4750 50 1 7.5608 -2.2963 2.0433 51 1 6.2988 -3.5411 1.8792 52 1 1.8020 -2.1451 -0.0074 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_6739946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:02 Heat of formation + Delta-G solvation = 25.277670 kcal Electronic energy + Delta-G solvation = -31607.575248 eV Core-core repulsion = 27397.490727 eV Total energy + Delta-G solvation = -4210.084521 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.173 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.38300 -41.21516 -40.04099 -39.32315 -37.72928 -37.26451 -34.96481 -33.27890 -32.34323 -31.78644 -30.69226 -30.25349 -28.30197 -26.37614 -26.08813 -24.64745 -23.67443 -23.53929 -23.19630 -21.77695 -21.42414 -20.20233 -19.44103 -18.88077 -18.24164 -17.96732 -17.77797 -17.32021 -17.14376 -16.98547 -16.57483 -16.49312 -16.19485 -16.14747 -15.94569 -15.45132 -15.32147 -15.08605 -14.61534 -14.53891 -14.33667 -14.19068 -14.00183 -13.92692 -13.91315 -13.51577 -13.31514 -13.15402 -13.04056 -12.95733 -12.88620 -12.76540 -12.59622 -12.48492 -12.31256 -12.28468 -11.88593 -11.82930 -11.72522 -11.48521 -11.28562 -11.00234 -10.71097 -10.30153 -9.71439 -9.45591 -5.10975 -0.72273 0.23901 0.62829 0.64123 1.06623 1.27650 1.47198 1.88571 1.92671 2.01624 2.48004 2.55661 2.66128 2.95402 3.14041 3.32777 3.35804 3.39350 3.54415 3.61640 3.64993 3.71012 3.79275 3.87128 3.89467 4.04417 4.05421 4.10303 4.11761 4.20378 4.22481 4.29840 4.33780 4.39280 4.48480 4.53526 4.54919 4.57653 4.66000 4.66882 4.72685 4.78976 4.81638 4.85326 4.89814 4.97000 4.98078 5.01076 5.13494 5.19684 5.35776 5.38122 5.42527 5.90962 6.25212 6.62164 6.95808 Molecular weight = 368.17amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.001864 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.131504 B =15015.121025 C =15763.980007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.102 4.102 3 C -0.238 4.238 4 C -0.036 4.036 5 O -0.543 6.543 6 Si 0.733 3.267 7 S 0.247 5.753 8 C -0.284 4.284 9 C 0.594 3.406 10 O -0.566 6.566 11 N -0.714 5.714 12 C 0.133 3.867 13 H 0.077 0.923 14 C -0.122 4.122 15 C -0.135 4.135 16 C 0.044 3.956 17 H 0.157 0.843 18 N -0.369 5.369 19 H 0.434 0.566 20 C -0.036 4.036 21 C 0.029 3.971 22 O -0.401 6.401 23 C 0.028 3.972 24 C -0.035 4.035 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.060 4.060 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.395 0.605 33 H -0.283 1.283 34 H -0.244 1.244 35 H 0.410 0.590 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.166 0.834 47 H 0.144 0.856 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.047 0.953 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.779 -10.441 -0.362 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.357 4.357 4 C -0.148 4.148 5 O -0.351 6.351 6 Si 0.635 3.365 7 S 0.516 5.484 8 C -0.404 4.404 9 C 0.381 3.619 10 O -0.447 6.447 11 N -0.365 5.365 12 C 0.029 3.971 13 H 0.095 0.905 14 C -0.161 4.161 15 C -0.173 4.173 16 C -0.058 4.058 17 H 0.175 0.825 18 N 0.052 4.948 19 H 0.272 0.728 20 C -0.158 4.158 21 C -0.047 4.047 22 O -0.320 6.320 23 C -0.049 4.049 24 C -0.157 4.157 25 C -0.173 4.173 26 C -0.168 4.168 27 C -0.093 4.093 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.246 0.754 33 H -0.210 1.210 34 H -0.169 1.169 35 H 0.246 0.754 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.105 0.895 45 H 0.145 0.855 46 H 0.184 0.816 47 H 0.162 0.838 48 H 0.111 0.889 49 H 0.126 0.874 50 H 0.104 0.896 51 H 0.066 0.934 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.481 -9.233 0.516 27.108 hybrid contribution -2.540 -0.979 0.407 2.752 sum 22.941 -10.212 0.924 25.129 Atomic orbital electron populations 1.20617 0.88507 1.02800 1.03402 1.18768 0.98743 0.90636 1.03258 1.24639 0.99318 1.00932 1.10829 1.24655 0.92768 0.95299 1.02108 1.86529 1.27964 1.90205 1.30358 0.94042 0.76177 0.77543 0.88743 1.82592 1.01970 0.95905 1.67981 1.24675 0.97842 0.98537 1.19363 1.17024 0.82753 0.86698 0.75410 1.90840 1.82402 1.19710 1.51720 1.45859 1.04426 1.11395 1.74856 1.21363 0.87715 0.90597 0.97403 0.90529 1.21749 0.91891 0.99392 1.03040 1.22077 1.01452 1.00645 0.93086 1.23416 0.88104 0.92018 1.02212 0.82501 1.45409 1.14946 1.18011 1.16413 0.72815 1.24559 1.05340 1.04192 0.81670 1.23289 0.84059 0.94780 1.02610 1.88327 1.33477 1.81604 1.28572 1.23320 1.00999 0.96446 0.84147 1.24595 0.82896 1.01223 1.06947 1.22019 0.91982 0.99059 1.04218 1.21832 0.99043 0.99723 0.96225 1.20769 0.91705 1.00010 0.96848 0.89947 0.92224 0.90553 0.86402 0.75421 1.20956 1.16922 0.75381 0.89951 0.88687 0.88427 0.86055 0.83819 0.82426 0.89520 0.85771 0.89494 0.85538 0.81650 0.83763 0.88877 0.87374 0.89610 0.93387 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 1.38 8.68 71.23 0.62 2.00 16 2 C -0.10 1.48 5.75 -21.05 -0.12 1.36 16 3 C -0.24 4.05 5.53 24.68 0.14 4.19 16 4 C -0.04 0.62 2.76 71.24 0.20 0.82 16 5 O -0.54 8.61 9.87 -148.98 -1.47 7.14 16 6 Si 0.73 -13.82 31.32 68.60 2.15 -11.67 16 7 S 0.25 -5.21 19.79 -56.49 -1.12 -6.33 16 8 C -0.28 4.74 6.45 24.07 0.16 4.90 16 9 C 0.59 -10.49 7.75 86.42 0.67 -9.82 16 10 O -0.57 5.57 16.50 -4.37 -0.07 5.50 16 11 N -0.71 20.08 5.07 -446.59 -2.27 17.81 16 12 C 0.13 -4.75 2.45 45.00 0.11 -4.64 16 13 H 0.08 -2.38 7.58 -2.39 -0.02 -2.40 16 14 C -0.12 5.49 5.39 30.60 0.16 5.65 16 15 C -0.13 7.34 4.90 30.59 0.15 7.49 16 16 C 0.04 -2.58 1.62 44.92 0.07 -2.51 16 17 H 0.16 -9.50 8.14 -2.39 -0.02 -9.52 16 18 N -0.37 22.86 0.24 -870.54 -0.21 22.65 16 19 H 0.43 -28.41 8.32 -89.69 -0.75 -29.16 16 20 C -0.04 2.08 4.93 86.32 0.43 2.50 16 21 C 0.03 -1.45 6.96 72.01 0.50 -0.95 16 22 O -0.40 16.90 10.84 -148.98 -1.62 15.29 16 23 C 0.03 -1.39 6.96 71.99 0.50 -0.89 16 24 C -0.04 2.09 4.93 86.30 0.43 2.52 16 25 C -0.13 6.82 4.90 30.60 0.15 6.97 16 26 C -0.13 5.02 5.50 30.59 0.17 5.19 16 27 C -0.06 0.80 9.80 21.72 0.21 1.02 16 28 H 0.08 -1.37 8.14 -2.39 -0.02 -1.39 16 29 H 0.06 -0.83 8.13 -2.39 -0.02 -0.85 16 30 H 0.08 -0.94 6.43 -2.39 -0.02 -0.96 16 31 H 0.12 -1.89 7.96 -2.39 -0.02 -1.91 16 32 H 0.40 -9.06 8.67 -74.06 -0.64 -9.70 16 33 H -0.28 2.88 7.11 99.48 0.71 3.58 16 34 H -0.24 4.39 7.09 99.48 0.71 5.09 16 35 H 0.41 -13.10 7.72 -92.70 -0.72 -13.82 16 36 H 0.08 -3.40 8.14 -2.39 -0.02 -3.42 16 37 H 0.09 -4.43 8.14 -2.39 -0.02 -4.45 16 38 H 0.10 -5.31 8.14 -2.39 -0.02 -5.32 16 39 H 0.12 -7.11 6.29 -2.39 -0.02 -7.13 16 40 H 0.14 -8.38 8.14 -2.38 -0.02 -8.40 16 41 H 0.16 -9.56 6.15 -2.39 -0.01 -9.57 16 42 H 0.09 -4.45 8.14 -2.39 -0.02 -4.47 16 43 H 0.12 -5.77 8.14 -2.39 -0.02 -5.79 16 44 H 0.09 -4.54 8.14 -2.39 -0.02 -4.56 16 45 H 0.13 -6.04 8.14 -2.39 -0.02 -6.06 16 46 H 0.17 -10.54 6.15 -2.39 -0.01 -10.56 16 47 H 0.14 -8.62 8.14 -2.39 -0.02 -8.64 16 48 H 0.09 -4.67 8.14 -2.39 -0.02 -4.68 16 49 H 0.11 -5.74 6.28 -2.39 -0.01 -5.75 16 50 H 0.09 -3.46 8.14 -2.39 -0.02 -3.48 16 51 H 0.05 -1.38 8.14 -2.39 -0.02 -1.40 16 52 H 0.14 -1.75 8.06 -2.91 -0.02 -1.78 16 Total: 1.00 -79.13 404.80 -1.18 -80.31 By element: Atomic # 1 Polarization: -155.37 SS G_CDS: -1.12 Total: -156.49 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 4.54 Total: 25.79 kcal Atomic # 7 Polarization: 42.94 SS G_CDS: -2.48 Total: 40.46 kcal Atomic # 8 Polarization: 31.09 SS G_CDS: -3.16 Total: 27.93 kcal Atomic # 14 Polarization: -13.82 SS G_CDS: 2.15 Total: -11.67 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.12 Total: -6.33 kcal Total: -79.13 -1.18 -80.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_6739946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.589 kcal (2) G-P(sol) polarization free energy of solvation -79.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds