Wall clock time and date at job start Sun Mar 7 2021 09:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86295 * 109.47119 * 2 1 4 4 C 1.50699 * 109.47058 * 120.00130 * 2 1 3 5 5 C 1.32774 * 124.71301 * 65.31508 * 4 2 1 6 6 C 1.44427 * 113.08324 * 180.14581 * 5 4 2 7 7 C 1.47191 * 123.45679 * 179.81087 * 6 5 4 8 8 O 1.21636 * 120.00572 * 359.72105 * 7 6 5 9 9 N 1.34777 * 119.99582 * 179.73061 * 7 6 5 10 10 C 1.46505 * 119.99797 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47276 * 325.00066 * 10 9 7 12 12 C 1.53002 * 109.46958 * 84.99979 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46894 * 109.47224 * 180.02562 * 14 13 12 17 17 H 1.00907 * 109.47919 * 299.99786 * 16 14 13 18 18 C 1.46935 * 109.47911 * 179.97438 * 16 14 13 19 19 C 1.53076 * 109.38082 * 179.97438 * 18 16 14 20 20 O 1.43037 * 109.25149 * 57.62568 * 19 18 16 21 21 C 1.43031 * 113.65514 * 302.10196 * 20 19 18 22 22 C 1.46939 * 109.48529 * 60.01399 * 16 14 13 23 23 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 24 24 C 1.52996 * 109.46998 * 204.99519 * 10 9 7 25 25 C 1.36004 * 113.07872 * 359.53991 * 6 5 4 26 26 S 1.70446 * 110.81727 * 0.24537 * 25 6 5 27 27 H 0.96698 * 114.00030 * 59.99848 * 1 2 3 28 28 H 1.09003 * 109.46801 * 240.00005 * 2 1 3 29 29 H 1.48500 * 109.99609 * 60.00055 * 3 2 1 30 30 H 1.48504 * 110.00002 * 181.31443 * 3 2 1 31 31 H 1.08003 * 123.46013 * 359.93130 * 5 4 2 32 32 H 0.97001 * 120.00457 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 34 34 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 35 35 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 36 36 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.48541 * 299.95944 * 18 16 14 38 38 H 1.09003 * 109.49131 * 60.01550 * 18 16 14 39 39 H 1.08994 * 109.50021 * 297.69760 * 19 18 16 40 40 H 1.08997 * 109.54830 * 177.58455 * 19 18 16 41 41 H 1.09001 * 109.50906 * 297.97747 * 21 20 19 42 42 H 1.08996 * 109.54500 * 177.86246 * 21 20 19 43 43 H 1.09002 * 109.48256 * 299.98534 * 22 16 14 44 44 H 1.09006 * 109.48029 * 60.01694 * 22 16 14 45 45 H 1.09002 * 109.47153 * 180.02562 * 23 14 13 46 46 H 1.09001 * 109.46832 * 60.00321 * 23 14 13 47 47 H 1.09004 * 109.47368 * 60.00227 * 24 10 9 48 48 H 1.09001 * 109.47372 * 300.00383 * 24 10 9 49 49 H 1.07999 * 124.59134 * 180.24990 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7536 -2.0017 1.4835 6 6 2.3369 -2.4185 2.7373 7 6 2.2711 -3.7989 3.2437 8 8 1.6985 -4.6568 2.5989 9 7 2.8451 -4.1124 4.4221 10 6 2.7792 -5.4863 4.9265 11 1 1.8235 -5.9301 4.6481 12 6 3.9188 -6.3075 4.3200 13 6 3.8496 -7.7425 4.8462 14 6 3.9824 -7.7337 6.3705 15 1 4.9383 -7.2902 6.6492 16 7 3.9166 -9.1114 6.8757 17 1 3.0319 -9.5225 6.6176 18 6 4.0448 -9.1032 8.3394 19 6 3.9752 -10.5398 8.8635 20 8 5.0079 -11.3162 8.2498 21 6 4.9395 -11.3353 6.8213 22 6 5.0114 -9.8998 6.2936 23 6 2.8429 -6.9125 6.9770 24 6 2.9125 -5.4770 6.4506 25 6 2.9582 -1.4057 3.3991 26 16 2.8398 0.0522 2.5240 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 1.5614 2.4677 1.2085 30 1 3.5346 1.7702 -0.0320 31 1 1.2241 -2.6708 0.8215 32 1 3.3020 -3.4284 4.9363 33 1 3.8239 -6.3142 3.2341 34 1 4.8746 -5.8637 4.5984 35 1 2.8937 -8.1860 4.5674 36 1 4.6612 -8.3276 4.4138 37 1 5.0009 -8.6602 8.6182 38 1 3.2329 -8.5188 8.7724 39 1 3.0035 -10.9693 8.6200 40 1 4.1129 -10.5406 9.9447 41 1 4.0007 -11.7919 6.5078 42 1 5.7751 -11.9114 6.4238 43 1 4.9171 -9.9066 5.2077 44 1 5.9672 -9.4562 6.5728 45 1 2.9378 -6.9058 8.0629 46 1 1.8871 -7.3560 6.6982 47 1 2.1006 -4.8919 6.8828 48 1 3.8683 -5.0331 6.7291 49 1 3.4588 -1.5110 4.3502 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608376_6894386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:07 Heat of formation + Delta-G solvation = 54.630925 kcal Electronic energy + Delta-G solvation = -29469.602676 eV Core-core repulsion = 25416.328627 eV Total energy + Delta-G solvation = -4053.274049 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.59765 -42.38513 -41.20287 -39.73425 -39.10063 -37.87325 -36.27360 -35.43127 -33.70886 -33.23246 -32.09916 -30.10936 -28.18816 -27.71780 -26.79021 -25.87700 -25.43193 -24.96435 -23.18131 -22.74083 -21.36255 -21.05911 -20.41573 -19.92945 -19.74965 -19.19596 -19.15127 -19.00582 -18.79072 -18.32293 -18.06567 -17.57916 -17.28663 -16.95007 -16.82125 -16.34982 -16.32974 -16.23176 -16.14656 -15.84828 -15.73058 -15.28369 -14.99306 -14.96442 -14.90158 -14.80938 -14.61882 -14.58691 -14.44774 -14.39628 -14.16787 -13.98118 -13.47107 -13.32019 -13.19582 -13.04621 -13.02989 -12.70815 -11.92177 -11.38545 -11.14603 -10.74747 -10.31986 -5.88907 -1.63404 -1.19594 -0.40414 -0.04341 0.06194 0.26815 0.31412 0.49346 0.50852 0.62936 0.85031 0.91238 0.93717 1.19471 1.20446 1.27202 1.39431 1.46763 1.52421 1.66734 1.76057 1.83271 1.93464 2.04045 2.09201 2.24503 2.29726 2.38822 2.41420 2.43967 2.51418 2.60987 2.61062 2.70563 2.74876 2.85209 2.85829 2.90750 3.00042 3.15721 3.18578 3.29312 3.43635 3.58005 3.65478 3.65878 3.83445 3.88883 4.17006 4.27193 4.43354 5.28809 5.88816 6.12959 Molecular weight = 354.16amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.001813 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.842955 B =15440.843892 C =15687.129253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.036 4.036 3 Si 0.672 3.328 4 C -0.193 4.193 5 C -0.052 4.052 6 C -0.162 4.162 7 C 0.587 3.413 8 O -0.527 6.527 9 N -0.728 5.728 10 C 0.142 3.858 11 H 0.097 0.903 12 C -0.129 4.129 13 C -0.137 4.137 14 C 0.024 3.976 15 H 0.139 0.861 16 N -0.384 5.384 17 H 0.422 0.578 18 C -0.048 4.048 19 C 0.036 3.964 20 O -0.357 6.357 21 C 0.037 3.963 22 C -0.048 4.048 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.206 4.206 26 S 0.192 5.808 27 H 0.388 0.612 28 H 0.087 0.913 29 H -0.233 1.233 30 H -0.238 1.238 31 H 0.159 0.841 32 H 0.402 0.598 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -16.082 11.930 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.149 4.149 3 Si 0.571 3.429 4 C -0.309 4.309 5 C -0.081 4.081 6 C -0.181 4.181 7 C 0.373 3.627 8 O -0.403 6.403 9 N -0.381 5.381 10 C 0.037 3.963 11 H 0.115 0.885 12 C -0.169 4.169 13 C -0.176 4.176 14 C -0.078 4.078 15 H 0.157 0.843 16 N 0.039 4.961 17 H 0.257 0.743 18 C -0.169 4.169 19 C -0.041 4.041 20 O -0.274 6.274 21 C -0.041 4.041 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.164 4.164 25 C -0.344 4.344 26 S 0.459 5.541 27 H 0.236 0.764 28 H 0.105 0.895 29 H -0.156 1.156 30 H -0.161 1.161 31 H 0.176 0.824 32 H 0.237 0.763 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.160 0.840 41 H 0.100 0.900 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.157 0.843 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.048 -14.917 12.886 20.934 hybrid contribution -0.675 -1.513 -0.062 1.658 sum 6.373 -16.429 12.824 21.794 Atomic orbital electron populations 1.86500 1.16564 1.81900 1.50050 1.23993 0.86143 1.09768 0.95044 0.94336 0.81935 0.78031 0.88633 1.23486 1.08733 0.97225 1.01448 1.21021 0.97610 0.94451 0.95024 1.20084 1.06643 0.93648 0.97710 1.17613 0.77541 0.87199 0.80307 1.90832 1.42728 1.49682 1.57105 1.45786 1.58744 1.10901 1.22647 1.20981 1.00143 0.82895 0.92253 0.88489 1.21939 0.99780 0.91987 1.03157 1.22105 1.05202 1.00956 0.89296 1.23772 1.06055 0.78949 0.99000 0.84301 1.45681 1.18256 1.16387 1.15805 0.74276 1.24713 1.10613 1.04595 0.77018 1.23264 0.93184 0.85638 1.01993 1.88402 1.50597 1.70266 1.18118 1.23273 1.06883 0.92015 0.81893 1.24727 0.92076 0.95805 1.04330 1.22081 0.97011 0.96562 1.01776 1.21782 1.04989 0.94926 0.94719 1.25814 1.04943 0.98785 1.04866 1.83434 1.50044 1.09482 1.11162 0.76360 0.89543 1.15628 1.16138 0.82395 0.76268 0.88892 0.90385 0.89013 0.88939 0.84307 0.83853 0.90073 0.84021 0.90049 0.84005 0.83804 0.84302 0.88712 0.88917 0.88721 0.89952 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.99 12.86 -35.23 -0.45 3.53 16 2 C -0.04 0.29 2.93 36.01 0.11 0.40 16 3 Si 0.67 -5.82 30.92 -169.99 -5.26 -11.08 16 4 C -0.19 1.28 5.69 -36.18 -0.21 1.07 16 5 C -0.05 0.34 9.95 -39.02 -0.39 -0.05 16 6 C -0.16 1.36 5.98 -104.63 -0.63 0.74 16 7 C 0.59 -5.58 7.76 -12.62 -0.10 -5.68 16 8 O -0.53 3.16 16.46 5.25 0.09 3.24 16 9 N -0.73 10.72 5.05 -54.95 -0.28 10.44 16 10 C 0.14 -2.59 2.45 -67.93 -0.17 -2.76 16 11 H 0.10 -1.57 7.58 -51.93 -0.39 -1.96 16 12 C -0.13 2.57 5.49 -26.73 -0.15 2.42 16 13 C -0.14 3.41 4.90 -26.73 -0.13 3.28 16 14 C 0.02 -0.66 1.61 -67.71 -0.11 -0.77 16 15 H 0.14 -3.96 8.14 -51.93 -0.42 -4.38 16 16 N -0.38 11.51 0.24 -226.46 -0.05 11.46 16 17 H 0.42 -13.36 8.32 -39.29 -0.33 -13.69 16 18 C -0.05 1.38 4.93 -3.77 -0.02 1.36 16 19 C 0.04 -0.92 6.96 37.20 0.26 -0.66 16 20 O -0.36 7.75 10.84 -35.23 -0.38 7.37 16 21 C 0.04 -0.92 6.97 37.21 0.26 -0.66 16 22 C -0.05 1.36 4.94 -3.75 -0.02 1.34 16 23 C -0.14 3.54 4.90 -26.71 -0.13 3.40 16 24 C -0.13 2.75 5.39 -26.71 -0.14 2.60 16 25 C -0.21 2.10 10.38 29.93 0.31 2.41 16 26 S 0.19 -1.51 20.20 -107.50 -2.17 -3.69 16 27 H 0.39 -4.69 8.74 45.56 0.40 -4.29 16 28 H 0.09 -0.84 7.96 -51.93 -0.41 -1.25 16 29 H -0.23 1.37 7.11 56.52 0.40 1.77 16 30 H -0.24 1.60 7.11 56.52 0.40 2.00 16 31 H 0.16 -0.96 8.06 -52.48 -0.42 -1.38 16 32 H 0.40 -6.73 7.10 -40.82 -0.29 -7.02 16 33 H 0.09 -1.48 8.14 -51.93 -0.42 -1.91 16 34 H 0.08 -1.57 8.14 -51.93 -0.42 -1.99 16 35 H 0.09 -2.27 8.14 -51.93 -0.42 -2.69 16 36 H 0.09 -2.39 6.28 -51.93 -0.33 -2.71 16 37 H 0.14 -3.99 8.14 -51.93 -0.42 -4.41 16 38 H 0.14 -4.33 6.15 -51.93 -0.32 -4.65 16 39 H 0.08 -2.13 8.14 -51.93 -0.42 -2.55 16 40 H 0.14 -3.47 8.14 -51.93 -0.42 -3.89 16 41 H 0.08 -2.12 8.14 -51.93 -0.42 -2.54 16 42 H 0.14 -3.44 8.14 -51.93 -0.42 -3.87 16 43 H 0.14 -4.25 6.15 -51.93 -0.32 -4.57 16 44 H 0.14 -3.95 8.14 -51.93 -0.42 -4.37 16 45 H 0.09 -2.58 6.29 -51.93 -0.33 -2.90 16 46 H 0.09 -2.40 8.14 -51.93 -0.42 -2.83 16 47 H 0.09 -1.90 8.14 -51.93 -0.42 -2.33 16 48 H 0.08 -1.84 8.14 -51.93 -0.42 -2.26 16 49 H 0.17 -2.39 7.01 -52.49 -0.37 -2.76 16 LS Contribution 387.50 15.07 5.84 5.84 Total: 1.00 -36.16 387.50 -11.72 -47.88 By element: Atomic # 1 Polarization: -75.63 SS G_CDS: -7.80 Total: -83.44 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.25 Total: 8.44 kcal Atomic # 7 Polarization: 22.23 SS G_CDS: -0.33 Total: 21.90 kcal Atomic # 8 Polarization: 14.89 SS G_CDS: -0.75 Total: 14.14 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: -5.26 Total: -11.08 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.17 Total: -3.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.16 -11.72 -47.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_6894386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.509 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds