Wall clock time and date at job start Sun Mar 7 2021 09:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86295 * 109.47119 * 2 1 4 4 C 1.50699 * 109.47058 * 120.00130 * 2 1 3 5 5 C 1.32774 * 124.71301 * 65.31508 * 4 2 1 6 6 C 1.44427 * 113.08324 * 180.14581 * 5 4 2 7 7 C 1.47191 * 123.45679 * 179.81087 * 6 5 4 8 8 O 1.21636 * 120.00572 * 359.72105 * 7 6 5 9 9 N 1.34777 * 119.99582 * 179.73061 * 7 6 5 10 10 C 1.46505 * 119.99797 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47276 * 325.00066 * 10 9 7 12 12 C 1.53002 * 109.46958 * 84.99979 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46894 * 109.47224 * 180.02562 * 14 13 12 17 17 H 1.00907 * 109.47919 * 299.99786 * 16 14 13 18 18 C 1.46935 * 109.47911 * 179.97438 * 16 14 13 19 19 C 1.53076 * 109.38082 * 179.97438 * 18 16 14 20 20 O 1.43037 * 109.25149 * 57.62568 * 19 18 16 21 21 C 1.43031 * 113.65514 * 302.10196 * 20 19 18 22 22 C 1.46939 * 109.48529 * 60.01399 * 16 14 13 23 23 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 24 24 C 1.52996 * 109.46998 * 204.99519 * 10 9 7 25 25 C 1.36004 * 113.07872 * 359.53991 * 6 5 4 26 26 S 1.70446 * 110.81727 * 0.24537 * 25 6 5 27 27 H 0.96698 * 114.00030 * 59.99848 * 1 2 3 28 28 H 1.09003 * 109.46801 * 240.00005 * 2 1 3 29 29 H 1.48500 * 109.99609 * 60.00055 * 3 2 1 30 30 H 1.48504 * 110.00002 * 181.31443 * 3 2 1 31 31 H 1.08003 * 123.46013 * 359.93130 * 5 4 2 32 32 H 0.97001 * 120.00457 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 34 34 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 35 35 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 36 36 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.48541 * 299.95944 * 18 16 14 38 38 H 1.09003 * 109.49131 * 60.01550 * 18 16 14 39 39 H 1.08994 * 109.50021 * 297.69760 * 19 18 16 40 40 H 1.08997 * 109.54830 * 177.58455 * 19 18 16 41 41 H 1.09001 * 109.50906 * 297.97747 * 21 20 19 42 42 H 1.08996 * 109.54500 * 177.86246 * 21 20 19 43 43 H 1.09002 * 109.48256 * 299.98534 * 22 16 14 44 44 H 1.09006 * 109.48029 * 60.01694 * 22 16 14 45 45 H 1.09002 * 109.47153 * 180.02562 * 23 14 13 46 46 H 1.09001 * 109.46832 * 60.00321 * 23 14 13 47 47 H 1.09004 * 109.47368 * 60.00227 * 24 10 9 48 48 H 1.09001 * 109.47372 * 300.00383 * 24 10 9 49 49 H 1.07999 * 124.59134 * 180.24990 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7536 -2.0017 1.4835 6 6 2.3369 -2.4185 2.7373 7 6 2.2711 -3.7989 3.2437 8 8 1.6985 -4.6568 2.5989 9 7 2.8451 -4.1124 4.4221 10 6 2.7792 -5.4863 4.9265 11 1 1.8235 -5.9301 4.6481 12 6 3.9188 -6.3075 4.3200 13 6 3.8496 -7.7425 4.8462 14 6 3.9824 -7.7337 6.3705 15 1 4.9383 -7.2902 6.6492 16 7 3.9166 -9.1114 6.8757 17 1 3.0319 -9.5225 6.6176 18 6 4.0448 -9.1032 8.3394 19 6 3.9752 -10.5398 8.8635 20 8 5.0079 -11.3162 8.2498 21 6 4.9395 -11.3353 6.8213 22 6 5.0114 -9.8998 6.2936 23 6 2.8429 -6.9125 6.9770 24 6 2.9125 -5.4770 6.4506 25 6 2.9582 -1.4057 3.3991 26 16 2.8398 0.0522 2.5240 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 1.5614 2.4677 1.2085 30 1 3.5346 1.7702 -0.0320 31 1 1.2241 -2.6708 0.8215 32 1 3.3020 -3.4284 4.9363 33 1 3.8239 -6.3142 3.2341 34 1 4.8746 -5.8637 4.5984 35 1 2.8937 -8.1860 4.5674 36 1 4.6612 -8.3276 4.4138 37 1 5.0009 -8.6602 8.6182 38 1 3.2329 -8.5188 8.7724 39 1 3.0035 -10.9693 8.6200 40 1 4.1129 -10.5406 9.9447 41 1 4.0007 -11.7919 6.5078 42 1 5.7751 -11.9114 6.4238 43 1 4.9171 -9.9066 5.2077 44 1 5.9672 -9.4562 6.5728 45 1 2.9378 -6.9058 8.0629 46 1 1.8871 -7.3560 6.6982 47 1 2.1006 -4.8919 6.8828 48 1 3.8683 -5.0331 6.7291 49 1 3.4588 -1.5110 4.3502 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_6894386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:06 Heat of formation + Delta-G solvation = 28.442063 kcal Electronic energy + Delta-G solvation = -29470.738310 eV Core-core repulsion = 25416.328627 eV Total energy + Delta-G solvation = -4054.409684 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.39926 -41.31527 -39.59022 -38.74726 -37.69626 -37.19299 -34.98788 -33.29104 -32.24848 -31.80053 -30.58024 -28.23105 -27.05416 -26.10733 -25.74239 -23.71690 -23.56166 -23.28022 -21.90763 -21.48922 -20.50290 -18.91961 -18.90729 -18.50185 -18.35903 -18.08311 -17.78778 -17.25021 -17.00076 -16.56999 -16.38187 -16.24411 -16.12728 -15.83554 -15.33800 -15.27756 -15.01626 -14.41591 -14.33082 -14.22679 -14.01405 -13.99965 -13.95905 -13.91650 -13.73023 -13.30347 -12.97520 -12.95660 -12.78063 -12.74246 -12.59582 -12.39932 -12.32980 -12.15795 -11.89877 -11.74077 -11.49843 -11.17094 -11.01616 -10.51428 -10.29539 -10.08938 -9.67185 -5.23367 -0.49057 0.23357 0.60366 0.62338 0.69196 1.14475 1.53392 1.81716 1.97155 2.13791 2.46407 2.54074 2.64594 2.93432 3.12450 3.27573 3.34323 3.37654 3.59460 3.62034 3.66570 3.74216 3.78685 3.86028 3.87376 3.90194 4.02609 4.08728 4.09633 4.15353 4.19662 4.27926 4.31792 4.35647 4.47229 4.51992 4.54793 4.56022 4.64753 4.65231 4.74365 4.79210 4.86851 4.87579 4.96178 4.98855 5.01420 5.13904 5.18453 5.39693 5.89509 6.32878 6.76584 7.03184 Molecular weight = 354.16amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.001813 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.842955 B =15440.843892 C =15687.129253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.046 4.046 3 Si 0.747 3.253 4 C -0.212 4.212 5 C -0.071 4.071 6 C -0.181 4.181 7 C 0.583 3.417 8 O -0.575 6.575 9 N -0.710 5.710 10 C 0.133 3.867 11 H 0.071 0.929 12 C -0.127 4.127 13 C -0.135 4.135 14 C 0.046 3.954 15 H 0.159 0.841 16 N -0.369 5.369 17 H 0.434 0.566 18 C -0.035 4.035 19 C 0.028 3.972 20 O -0.401 6.401 21 C 0.029 3.971 22 C -0.036 4.036 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.179 4.179 26 S 0.171 5.829 27 H 0.406 0.594 28 H 0.101 0.899 29 H -0.272 1.272 30 H -0.264 1.264 31 H 0.143 0.857 32 H 0.414 0.586 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.158 0.842 44 H 0.145 0.855 45 H 0.121 0.879 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -16.509 13.857 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.158 4.158 3 Si 0.649 3.351 4 C -0.328 4.328 5 C -0.100 4.100 6 C -0.199 4.199 7 C 0.369 3.631 8 O -0.456 6.456 9 N -0.362 5.362 10 C 0.029 3.971 11 H 0.089 0.911 12 C -0.167 4.167 13 C -0.173 4.173 14 C -0.056 4.056 15 H 0.176 0.824 16 N 0.052 4.948 17 H 0.271 0.729 18 C -0.157 4.157 19 C -0.049 4.049 20 O -0.319 6.319 21 C -0.047 4.047 22 C -0.157 4.157 23 C -0.173 4.173 24 C -0.159 4.159 25 C -0.317 4.317 26 S 0.437 5.563 27 H 0.258 0.742 28 H 0.118 0.882 29 H -0.198 1.198 30 H -0.189 1.189 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.176 0.824 44 H 0.163 0.837 45 H 0.139 0.861 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.066 -15.363 14.828 22.824 hybrid contribution -0.999 -1.425 -0.605 1.843 sum 7.066 -16.787 14.223 23.109 Atomic orbital electron populations 1.86453 1.17012 1.82468 1.51542 1.24200 0.85965 1.10460 0.95181 0.93492 0.79198 0.75878 0.86544 1.23757 1.09271 0.97425 1.02389 1.21113 0.98270 0.94572 0.96089 1.20246 1.07203 0.94921 0.97480 1.17603 0.77715 0.86321 0.81480 1.90799 1.45275 1.50652 1.58844 1.45789 1.56719 1.12962 1.20716 1.21324 0.99741 0.80864 0.95166 0.91092 1.21818 0.99271 0.95179 1.00385 1.22021 1.06035 0.97555 0.91709 1.23400 1.06314 0.79512 0.96394 0.82384 1.45414 1.18757 1.15299 1.15360 0.72865 1.24601 1.11889 1.02160 0.77000 1.23326 0.92606 0.87655 1.01314 1.88323 1.52058 1.71629 1.19922 1.23298 1.06498 0.94321 0.80627 1.24571 0.92659 0.93734 1.04784 1.22082 0.97974 0.94043 1.03223 1.21736 1.05124 0.97883 0.91154 1.26134 1.03382 0.96697 1.05500 1.83463 1.50416 1.10857 1.11599 0.74240 0.88167 1.19811 1.18881 0.83981 0.74890 0.93503 0.89420 0.89081 0.87290 0.83689 0.81766 0.89547 0.85517 0.89555 0.85699 0.82441 0.83733 0.86109 0.88659 0.90321 0.88464 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 6.99 12.86 -148.98 -1.92 5.08 16 2 C -0.05 0.63 2.93 71.24 0.21 0.84 16 3 Si 0.75 -11.46 30.92 68.60 2.12 -9.34 16 4 C -0.21 2.20 5.69 24.51 0.14 2.34 16 5 C -0.07 0.66 9.95 22.67 0.23 0.88 16 6 C -0.18 2.56 5.98 -19.87 -0.12 2.44 16 7 C 0.58 -9.30 7.76 86.59 0.67 -8.63 16 8 O -0.57 4.34 16.46 -4.15 -0.07 4.27 16 9 N -0.71 19.71 5.05 -446.02 -2.25 17.46 16 10 C 0.13 -4.63 2.45 44.99 0.11 -4.52 16 11 H 0.07 -2.08 7.58 -2.39 -0.02 -2.09 16 12 C -0.13 4.88 5.49 30.59 0.17 5.05 16 13 C -0.14 6.75 4.90 30.60 0.15 6.90 16 14 C 0.05 -2.63 1.61 44.92 0.07 -2.56 16 15 H 0.16 -9.53 8.14 -2.39 -0.02 -9.54 16 16 N -0.37 22.68 0.24 -870.40 -0.21 22.47 16 17 H 0.43 -28.06 8.32 -89.69 -0.75 -28.80 16 18 C -0.03 2.07 4.93 86.32 0.43 2.49 16 19 C 0.03 -1.38 6.96 72.01 0.50 -0.88 16 20 O -0.40 16.75 10.84 -148.98 -1.62 15.13 16 21 C 0.03 -1.44 6.97 72.02 0.50 -0.94 16 22 C -0.04 2.06 4.94 86.33 0.43 2.49 16 23 C -0.14 7.25 4.90 30.61 0.15 7.40 16 24 C -0.12 5.32 5.39 30.61 0.17 5.48 16 25 C -0.18 3.46 10.38 67.30 0.70 4.16 16 26 S 0.17 -2.36 20.20 -56.49 -1.14 -3.50 16 27 H 0.41 -9.13 8.74 -74.06 -0.65 -9.78 16 28 H 0.10 -1.73 7.96 -2.39 -0.02 -1.75 16 29 H -0.27 2.46 7.11 99.48 0.71 3.16 16 30 H -0.26 2.99 7.11 99.48 0.71 3.70 16 31 H 0.14 -1.00 8.06 -2.91 -0.02 -1.03 16 32 H 0.41 -13.73 7.10 -92.71 -0.66 -14.39 16 33 H 0.05 -1.31 8.14 -2.39 -0.02 -1.33 16 34 H 0.09 -3.53 8.14 -2.39 -0.02 -3.55 16 35 H 0.09 -4.47 8.14 -2.39 -0.02 -4.49 16 36 H 0.11 -5.73 6.28 -2.39 -0.02 -5.75 16 37 H 0.15 -8.61 8.14 -2.38 -0.02 -8.63 16 38 H 0.16 -10.35 6.15 -2.39 -0.01 -10.36 16 39 H 0.09 -4.46 8.14 -2.39 -0.02 -4.48 16 40 H 0.13 -6.00 8.14 -2.39 -0.02 -6.02 16 41 H 0.09 -4.39 8.14 -2.39 -0.02 -4.41 16 42 H 0.13 -5.77 8.14 -2.39 -0.02 -5.79 16 43 H 0.16 -9.49 6.15 -2.39 -0.01 -9.50 16 44 H 0.14 -8.40 8.14 -2.38 -0.02 -8.42 16 45 H 0.12 -6.97 6.29 -2.39 -0.02 -6.98 16 46 H 0.09 -5.05 8.14 -2.39 -0.02 -5.07 16 47 H 0.08 -3.15 8.14 -2.39 -0.02 -3.17 16 48 H 0.10 -4.52 8.14 -2.39 -0.02 -4.54 16 49 H 0.21 -6.12 7.01 -2.91 -0.02 -6.14 16 Total: 1.00 -83.03 387.50 -1.61 -84.64 By element: Atomic # 1 Polarization: -158.12 SS G_CDS: -1.03 Total: -159.15 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 4.50 Total: 22.94 kcal Atomic # 7 Polarization: 42.39 SS G_CDS: -2.46 Total: 39.93 kcal Atomic # 8 Polarization: 28.08 SS G_CDS: -3.60 Total: 24.48 kcal Atomic # 14 Polarization: -11.46 SS G_CDS: 2.12 Total: -9.34 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -1.14 Total: -3.50 kcal Total: -83.03 -1.61 -84.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_6894386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.082 kcal (2) G-P(sol) polarization free energy of solvation -83.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds