Wall clock time and date at job start Sun Mar 7 2021 09:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36771 * 125.80371 * 2 1 4 4 C 1.47266 * 126.94007 * 359.93929 * 3 2 1 5 5 O 1.21632 * 119.99995 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00145 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00029 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47062 * 35.00511 * 7 6 4 9 9 C 1.53001 * 109.47308 * 155.00012 * 7 6 4 10 10 C 1.52996 * 109.47486 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47165 * 300.00170 * 10 9 7 12 12 H 1.08992 * 109.47280 * 300.00193 * 11 10 9 13 13 N 1.46906 * 109.46907 * 179.97438 * 11 10 9 14 14 H 1.00902 * 109.47492 * 299.99836 * 13 11 10 15 15 C 1.46941 * 109.47590 * 179.97438 * 13 11 10 16 16 C 1.53076 * 109.37442 * 180.02562 * 15 13 11 17 17 O 1.43030 * 109.25692 * 57.62386 * 16 15 13 18 18 C 1.43027 * 113.65312 * 302.10148 * 17 16 15 19 19 C 1.46939 * 109.47690 * 60.01798 * 13 11 10 20 20 C 1.53002 * 109.46978 * 60.00120 * 11 10 9 21 21 C 1.52996 * 109.46891 * 299.99589 * 20 11 10 22 22 C 1.46687 * 106.11871 * 180.20354 * 3 2 1 23 23 C 1.34489 * 106.32901 * 359.62668 * 22 3 2 24 24 C 1.50703 * 125.56525 * 180.08901 * 23 22 3 25 25 O 1.42892 * 109.47534 * 300.30685 * 24 23 22 26 26 Si 1.86301 * 109.46672 * 180.30685 * 24 23 22 27 27 N 1.34657 * 125.80321 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46995 * 90.00418 * 1 2 3 29 29 H 1.09000 * 109.46803 * 209.99673 * 1 2 3 30 30 H 1.08995 * 109.47348 * 330.00520 * 1 2 3 31 31 H 0.97001 * 119.99990 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47109 * 59.99973 * 9 7 6 33 33 H 1.09004 * 109.47086 * 300.00446 * 9 7 6 34 34 H 1.09000 * 109.47054 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46997 * 60.00430 * 10 9 7 36 36 H 1.09002 * 109.48746 * 299.95948 * 15 13 11 37 37 H 1.08995 * 109.48742 * 60.02136 * 15 13 11 38 38 H 1.08998 * 109.49602 * 297.69304 * 16 15 13 39 39 H 1.09004 * 109.54355 * 177.58716 * 16 15 13 40 40 H 1.09000 * 109.51137 * 297.97238 * 18 17 16 41 41 H 1.08999 * 109.54380 * 177.85657 * 18 17 16 42 42 H 1.08998 * 109.48689 * 299.97908 * 19 13 11 43 43 H 1.09001 * 109.48390 * 60.04165 * 19 13 11 44 44 H 1.09001 * 109.47142 * 59.99766 * 20 11 10 45 45 H 1.09004 * 109.47006 * 179.97438 * 20 11 10 46 46 H 1.09001 * 109.47372 * 300.00036 * 21 20 11 47 47 H 1.09004 * 109.47368 * 180.02562 * 21 20 11 48 48 H 1.08002 * 126.83123 * 179.74379 * 22 3 2 49 49 H 1.08995 * 109.47105 * 60.31116 * 24 23 22 50 50 H 0.96703 * 113.99950 * 300.00208 * 25 24 23 51 51 H 1.48500 * 110.00069 * 58.68420 * 26 24 23 52 52 H 1.48499 * 110.00058 * 179.97438 * 26 24 23 53 53 H 0.97002 * 124.85045 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0012 5 8 0.6839 2.7839 -0.0029 6 7 2.7850 3.5054 -0.0016 7 6 2.3504 4.9044 -0.0034 8 1 1.4383 5.0023 0.5853 9 6 3.4471 5.7800 0.6061 10 6 2.9930 7.2410 0.6048 11 6 2.7222 7.6897 -0.8326 12 1 3.6341 7.5921 -1.4215 13 7 2.2856 9.0923 -0.8337 14 1 1.4413 9.1823 -0.2886 15 6 2.0261 9.5236 -2.2142 16 6 1.5720 10.9854 -2.2128 17 8 2.5769 11.7909 -1.5906 18 6 2.8820 11.3943 -0.2507 19 6 3.3386 9.9337 -0.2485 20 6 1.6254 6.8142 -1.4421 21 6 2.0796 5.3532 -1.4408 22 6 3.6882 0.6151 -0.0050 23 6 3.6095 -0.7274 0.0008 24 6 4.7820 -1.6742 0.0006 25 8 5.5757 -1.4494 -1.1662 26 14 4.1616 -3.4309 0.0007 27 7 2.2947 -1.0921 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 3.7311 3.2915 -0.0014 32 1 4.3592 5.6821 0.0175 33 1 3.6397 5.4606 1.6304 34 1 3.7745 7.8648 1.0387 35 1 2.0810 7.3385 1.1938 36 1 2.9385 9.4274 -2.8028 37 1 1.2450 8.9001 -2.6492 38 1 0.6381 11.0757 -1.6580 39 1 1.4199 11.3211 -3.2386 40 1 1.9930 11.4985 0.3712 41 1 3.6784 12.0252 0.1439 42 1 3.5318 9.6146 0.7756 43 1 4.2505 9.8373 -0.8379 44 1 0.7134 6.9117 -0.8531 45 1 1.4322 7.1341 -2.4660 46 1 2.9916 5.2556 -2.0298 47 1 1.2984 4.7294 -1.8754 48 1 4.5890 1.2110 -0.0102 49 1 5.3876 -1.5028 0.8905 50 1 5.1000 -1.5841 -1.9973 51 1 3.3083 -3.6682 -1.1913 52 1 5.3082 -4.3745 -0.0001 53 1 1.9734 -2.0074 0.0005 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608376_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:26 Heat of formation + Delta-G solvation = 33.885989 kcal Electronic energy + Delta-G solvation = -32059.442555 eV Core-core repulsion = 27823.379302 eV Total energy + Delta-G solvation = -4236.063253 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.212 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.36785 -42.50836 -40.61739 -39.24594 -37.97376 -37.53224 -34.79571 -33.26414 -32.84416 -32.31988 -31.75213 -30.52967 -28.97818 -28.09449 -26.07214 -25.66138 -24.08989 -23.59376 -23.46758 -22.64410 -21.62339 -21.33533 -20.50327 -18.88130 -18.77940 -18.26185 -17.80264 -17.75031 -17.40320 -16.97825 -16.81712 -16.67018 -16.52710 -16.11682 -15.98545 -15.58984 -15.35319 -15.22508 -14.92134 -14.60761 -14.53486 -14.25047 -14.16307 -14.01982 -13.92733 -13.89344 -13.79565 -13.41543 -13.25573 -12.92878 -12.84999 -12.79022 -12.75550 -12.67041 -12.51329 -12.27398 -12.20729 -11.87391 -11.66315 -11.41185 -11.03419 -10.99263 -10.67751 -10.14774 -9.82914 -9.18394 -5.12217 0.65182 0.67889 1.06762 1.26717 1.39393 1.78773 2.02534 2.37902 2.49150 2.51677 2.57967 2.67294 2.97075 3.15091 3.28952 3.38290 3.42199 3.60490 3.66062 3.72904 3.79915 3.83097 3.87112 3.93523 4.06172 4.09188 4.13546 4.17174 4.20782 4.26365 4.33417 4.35891 4.48459 4.51395 4.54186 4.55412 4.60056 4.66733 4.67160 4.69161 4.73138 4.79458 4.83469 4.92196 5.00300 5.02099 5.04789 5.16317 5.26133 5.28788 5.60163 5.68791 5.83908 5.91638 6.34710 6.39546 6.61791 7.33802 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.001969 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.379681 B =14217.784843 C =14776.387597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.114 3.886 3 C -0.266 4.266 4 C 0.592 3.408 5 O -0.583 6.583 6 N -0.718 5.718 7 C 0.136 3.864 8 H 0.071 0.929 9 C -0.121 4.121 10 C -0.134 4.134 11 C 0.045 3.955 12 H 0.156 0.844 13 N -0.369 5.369 14 H 0.434 0.566 15 C -0.036 4.036 16 C 0.030 3.970 17 O -0.401 6.401 18 C 0.028 3.972 19 C -0.035 4.035 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.025 4.025 24 C -0.038 4.038 25 O -0.538 6.538 26 Si 0.741 3.259 27 N -0.539 5.539 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.410 0.590 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.127 0.873 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.047 0.953 48 H 0.162 0.838 49 H 0.142 0.858 50 H 0.387 0.613 51 H -0.279 1.279 52 H -0.299 1.299 53 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 21.809 0.382 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.006 4.006 3 C -0.276 4.276 4 C 0.382 3.618 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.032 3.968 8 H 0.089 0.911 9 C -0.159 4.159 10 C -0.172 4.172 11 C -0.056 4.056 12 H 0.173 0.827 13 N 0.052 4.948 14 H 0.272 0.728 15 C -0.158 4.158 16 C -0.047 4.047 17 O -0.320 6.320 18 C -0.049 4.049 19 C -0.157 4.157 20 C -0.172 4.172 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.133 4.133 24 C -0.149 4.149 25 O -0.346 6.346 26 Si 0.646 3.354 27 N -0.139 5.139 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.145 0.855 42 H 0.183 0.817 43 H 0.162 0.838 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.066 0.934 48 H 0.180 0.820 49 H 0.159 0.841 50 H 0.237 0.763 51 H -0.205 1.205 52 H -0.226 1.226 53 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -0.408 21.372 0.166 21.377 hybrid contribution 0.059 -0.865 -0.967 1.299 sum -0.349 20.507 -0.801 20.526 Atomic orbital electron populations 1.20607 0.86318 1.04734 1.03788 1.20629 0.94253 0.85807 0.99924 1.20283 0.93723 0.92323 1.21235 1.17433 0.85111 0.84745 0.74552 1.90734 1.18019 1.84863 1.52854 1.45751 1.09919 1.05780 1.75354 1.21211 0.98954 0.79739 0.96890 0.91056 1.21711 0.97905 0.93616 1.02698 1.22066 1.05594 0.96466 0.93095 1.23397 1.02802 0.77344 1.02097 0.82676 1.45409 1.18672 1.14284 1.16400 0.72819 1.24558 1.10196 0.99382 0.81628 1.23292 0.91559 0.87322 1.02540 1.88319 1.58787 1.56496 1.28357 1.23315 1.04081 0.93328 0.84144 1.24590 0.92658 0.91657 1.06781 1.22016 0.97819 0.93365 1.04022 1.21804 1.02390 0.95873 0.96481 1.21953 0.95567 0.92791 1.05319 1.20603 0.84449 0.95843 1.12441 1.24436 0.92257 1.06328 0.91904 1.86630 1.40473 1.90963 1.16490 0.94753 0.81040 0.72842 0.86760 1.41791 1.05466 1.08937 1.57683 0.90184 0.89562 0.89460 0.75349 0.89034 0.90425 0.86303 0.88507 0.83881 0.82401 0.89483 0.85720 0.89463 0.85536 0.81744 0.83829 0.88910 0.87472 0.90046 0.93447 0.82035 0.84070 0.76338 1.20490 1.22641 0.73554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.62 9.88 71.24 0.70 2.32 16 2 C 0.11 -1.76 7.17 41.78 0.30 -1.46 16 3 C -0.27 4.15 6.29 -19.04 -0.12 4.03 16 4 C 0.59 -9.78 7.77 86.62 0.67 -9.10 16 5 O -0.58 6.02 14.48 -4.13 -0.06 5.96 16 6 N -0.72 18.89 5.07 -445.95 -2.26 16.62 16 7 C 0.14 -4.63 2.45 44.99 0.11 -4.52 16 8 H 0.07 -2.08 7.58 -2.39 -0.02 -2.09 16 9 C -0.12 5.16 5.39 30.59 0.16 5.33 16 10 C -0.13 7.08 4.89 30.59 0.15 7.23 16 11 C 0.05 -2.58 1.62 44.91 0.07 -2.51 16 12 H 0.16 -9.13 8.14 -2.39 -0.02 -9.15 16 13 N -0.37 22.45 0.24 -870.56 -0.21 22.24 16 14 H 0.43 -27.97 8.32 -89.69 -0.75 -28.72 16 15 C -0.04 2.05 4.93 86.32 0.43 2.48 16 16 C 0.03 -1.45 6.96 72.01 0.50 -0.95 16 17 O -0.40 16.64 10.84 -148.98 -1.62 15.03 16 18 C 0.03 -1.39 6.96 71.99 0.50 -0.89 16 19 C -0.04 2.07 4.93 86.30 0.43 2.49 16 20 C -0.13 6.62 4.90 30.59 0.15 6.77 16 21 C -0.13 4.71 5.50 30.59 0.17 4.88 16 22 C -0.13 2.43 10.43 23.62 0.25 2.67 16 23 C -0.02 0.45 6.11 40.98 0.25 0.70 16 24 C -0.04 0.72 2.98 71.24 0.21 0.93 16 25 O -0.54 8.41 12.86 -148.98 -1.92 6.49 16 26 Si 0.74 -13.37 30.94 68.60 2.12 -11.25 16 27 N -0.54 10.00 5.41 -171.07 -0.93 9.08 16 28 H 0.08 -1.34 8.14 -2.39 -0.02 -1.36 16 29 H 0.09 -1.75 8.14 -2.39 -0.02 -1.77 16 30 H 0.09 -1.13 6.47 -2.39 -0.02 -1.15 16 31 H 0.41 -12.19 7.73 -92.71 -0.72 -12.91 16 32 H 0.09 -4.04 8.14 -2.39 -0.02 -4.06 16 33 H 0.08 -2.99 8.14 -2.38 -0.02 -3.01 16 34 H 0.12 -6.74 6.29 -2.39 -0.02 -6.76 16 35 H 0.10 -5.10 8.14 -2.39 -0.02 -5.12 16 36 H 0.14 -8.20 8.14 -2.39 -0.02 -8.22 16 37 H 0.16 -9.45 6.15 -2.39 -0.01 -9.46 16 38 H 0.09 -4.42 8.14 -2.39 -0.02 -4.44 16 39 H 0.12 -5.73 8.14 -2.38 -0.02 -5.75 16 40 H 0.09 -4.50 8.14 -2.39 -0.02 -4.52 16 41 H 0.13 -5.95 8.14 -2.39 -0.02 -5.97 16 42 H 0.17 -10.27 6.15 -2.39 -0.01 -10.28 16 43 H 0.14 -8.41 8.14 -2.39 -0.02 -8.43 16 44 H 0.09 -4.54 8.14 -2.39 -0.02 -4.56 16 45 H 0.11 -5.57 6.28 -2.38 -0.01 -5.58 16 46 H 0.08 -3.12 8.14 -2.39 -0.02 -3.13 16 47 H 0.05 -1.30 8.14 -2.39 -0.02 -1.32 16 48 H 0.16 -3.66 7.70 -2.91 -0.02 -3.69 16 49 H 0.14 -2.96 7.96 -2.39 -0.02 -2.97 16 50 H 0.39 -7.91 8.70 -74.06 -0.64 -8.55 16 51 H -0.28 3.95 7.11 99.48 0.71 4.66 16 52 H -0.30 2.55 7.11 99.48 0.71 3.26 16 53 H 0.42 -9.50 6.70 -92.71 -0.62 -10.12 16 Total: 1.00 -78.94 401.39 -1.67 -80.61 By element: Atomic # 1 Polarization: -163.44 SS G_CDS: -1.74 Total: -165.18 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.94 Total: 20.40 kcal Atomic # 7 Polarization: 51.33 SS G_CDS: -3.40 Total: 47.93 kcal Atomic # 8 Polarization: 31.07 SS G_CDS: -3.59 Total: 27.48 kcal Atomic # 14 Polarization: -13.37 SS G_CDS: 2.12 Total: -11.25 kcal Total: -78.94 -1.67 -80.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608376_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.493 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds