Wall clock time and date at job start Sun Mar 7 2021 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 H 1.00895 * 109.46903 * 2 1 4 4 C 1.46896 * 109.47078 * 120.00704 * 2 1 3 5 5 C 1.46907 * 109.46659 * 240.00288 * 2 1 3 6 6 C 1.52995 * 109.46632 * 175.00157 * 5 2 1 7 7 H 1.09000 * 112.85307 * 43.80806 * 6 5 2 8 8 C 1.53791 * 113.60994 * 174.99997 * 6 5 2 9 9 C 1.53786 * 87.07966 * 139.97886 * 8 6 5 10 10 H 1.08998 * 113.60870 * 89.19954 * 9 8 6 11 11 N 1.46499 * 113.61394 * 220.01815 * 9 8 6 12 12 C 1.34777 * 119.99665 * 205.27970 * 11 9 8 13 13 O 1.21693 * 120.00200 * 359.72115 * 12 11 9 14 14 C 1.46680 * 119.99703 * 179.72441 * 12 11 9 15 15 C 1.37866 * 126.23126 * 179.71115 * 14 12 11 16 16 C 1.39839 * 107.08428 * 179.84713 * 15 14 12 17 17 C 1.50700 * 126.06748 * 180.14062 * 16 15 14 18 18 O 1.42902 * 109.46931 * 300.29977 * 17 16 15 19 19 Si 1.86303 * 109.46917 * 180.30543 * 17 16 15 20 20 C 1.35452 * 107.86271 * 0.41692 * 16 15 14 21 21 N 1.35525 * 108.87395 * 359.74497 * 20 16 15 22 22 C 1.53778 * 87.08287 * 334.56878 * 9 8 6 23 23 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46593 * 299.99852 * 1 2 3 25 25 H 1.08995 * 109.47315 * 59.99130 * 1 2 3 26 26 H 1.09002 * 109.46955 * 299.99223 * 4 2 1 27 27 H 1.08997 * 109.47759 * 59.99468 * 4 2 1 28 28 H 1.09003 * 109.46822 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.46946 * 55.00243 * 5 2 1 30 30 H 1.09005 * 109.46939 * 295.00038 * 5 2 1 31 31 H 1.08999 * 113.61698 * 25.43239 * 8 6 5 32 32 H 1.08999 * 113.68992 * 254.53765 * 8 6 5 33 33 H 0.97001 * 119.99790 * 24.99683 * 11 9 8 34 34 H 1.07997 * 126.45946 * 359.96364 * 15 14 12 35 35 H 1.08998 * 109.47432 * 60.30168 * 17 16 15 36 36 H 0.96698 * 114.00751 * 300.00563 * 18 17 16 37 37 H 1.48506 * 109.99756 * 179.97438 * 19 17 16 38 38 H 1.48499 * 110.00140 * 301.31504 * 19 17 16 39 39 H 1.08004 * 125.55997 * 179.69986 * 20 16 15 40 40 H 0.96998 * 125.68287 * 180.02562 * 21 20 16 41 41 H 1.08997 * 113.61721 * 139.97826 * 22 9 8 42 42 H 1.09004 * 113.61436 * 270.88721 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6926 1.1993 5 6 1.9586 -0.6925 -1.1996 6 6 3.4834 -0.5846 -1.2640 7 1 3.9615 -0.7640 -0.3010 8 6 4.1090 -1.3821 -2.4205 9 6 5.0666 -0.1949 -2.6171 10 1 5.9791 -0.2675 -2.0253 11 7 5.3243 0.1245 -4.0234 12 6 6.4669 0.7472 -4.3745 13 8 7.2822 1.0486 -3.5227 14 6 6.7277 1.0616 -5.7832 15 6 7.8445 1.6969 -6.2831 16 6 7.6802 1.7870 -7.6689 17 6 8.6536 2.4046 -8.6395 18 8 8.8551 3.7786 -8.3026 19 14 7.9687 2.2830 -10.3678 20 6 6.4880 1.2261 -7.9832 21 7 5.8992 0.7816 -6.8463 22 6 3.9817 0.6852 -1.9743 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8898 26 1 1.5954 -0.1788 2.0894 27 1 1.5953 -1.7202 1.1993 28 1 3.0487 -0.6930 1.1991 29 1 1.5240 -0.2329 -2.0872 30 1 1.6702 -1.7428 -1.1559 31 1 3.4310 -1.5397 -3.2593 32 1 4.6079 -2.2973 -2.1018 33 1 4.6745 -0.1158 -4.7023 34 1 8.6883 2.0555 -5.7123 35 1 9.6045 1.8744 -8.5874 36 1 8.0491 4.3123 -8.3283 37 1 8.9191 2.8892 -11.3346 38 1 7.7247 0.8608 -10.7186 39 1 6.0738 1.1468 -8.9775 40 1 5.0378 0.3393 -6.7909 41 1 4.3775 1.4392 -1.2939 42 1 3.2687 1.0928 -2.6910 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:23:22 Heat of formation + Delta-G solvation = 105.868592 kcal Electronic energy + Delta-G solvation = -21869.615549 eV Core-core repulsion = 18550.194885 eV Total energy + Delta-G solvation = -3319.420664 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.55176 -42.11978 -40.60213 -39.00647 -37.68870 -34.89780 -32.56372 -30.96847 -29.93380 -29.39662 -26.89286 -26.75639 -25.82444 -24.64217 -22.98087 -21.46477 -21.02674 -20.71906 -19.81363 -19.30179 -17.94990 -17.54139 -17.44406 -17.07897 -16.56959 -16.48818 -16.15990 -15.91521 -15.61875 -14.95614 -14.84403 -14.50097 -14.37071 -13.97617 -13.86600 -13.59019 -13.52086 -13.50997 -13.43376 -13.26760 -13.19092 -12.97401 -12.32530 -12.26889 -12.00985 -11.79330 -11.54699 -11.32583 -10.41285 -10.27418 -9.95908 -9.31546 -4.98137 0.30308 1.02055 1.35826 1.49759 1.68041 1.90245 2.08067 2.12335 2.20201 2.91239 2.95870 3.15501 3.38344 3.41083 3.63854 3.70166 3.72010 3.80704 3.85835 3.94707 4.15193 4.15757 4.24643 4.33065 4.35734 4.36887 4.49868 4.60360 4.65746 4.67972 4.69149 4.78546 4.82932 4.87130 4.87937 4.93526 4.99069 5.02914 5.12110 5.44324 5.54808 5.68517 6.30736 6.50801 6.86893 7.02258 Molecular weight = 281.17amu Principal moments of inertia in cm(-1) A = 0.039048 B = 0.002963 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.887887 B = 9448.158384 C = 9692.142187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 H 0.436 0.564 4 C -0.055 4.055 5 C 0.012 3.988 6 C -0.120 4.120 7 H 0.125 0.875 8 C -0.126 4.126 9 C 0.094 3.906 10 H 0.084 0.916 11 N -0.703 5.703 12 C 0.590 3.410 13 O -0.578 6.578 14 C -0.069 4.069 15 C -0.111 4.111 16 C -0.229 4.229 17 C -0.053 4.053 18 O -0.566 6.566 19 Si 0.800 3.200 20 C 0.060 3.940 21 N -0.510 5.510 22 C -0.151 4.151 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.393 0.607 37 H -0.318 1.318 38 H -0.271 1.271 39 H 0.214 0.786 40 H 0.439 0.561 41 H 0.073 0.927 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.732 -7.215 18.816 35.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.051 4.949 3 H 0.272 0.728 4 C -0.197 4.197 5 C -0.109 4.109 6 C -0.139 4.139 7 H 0.143 0.857 8 C -0.164 4.164 9 C -0.011 4.011 10 H 0.102 0.898 11 N -0.354 5.354 12 C 0.378 3.622 13 O -0.458 6.458 14 C -0.182 4.182 15 C -0.138 4.138 16 C -0.235 4.235 17 C -0.162 4.162 18 O -0.374 6.374 19 Si 0.706 3.294 20 C -0.078 4.078 21 N -0.108 5.108 22 C -0.189 4.189 23 H 0.140 0.860 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.251 0.749 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.243 0.757 37 H -0.247 1.247 38 H -0.197 1.197 39 H 0.230 0.770 40 H 0.281 0.719 41 H 0.092 0.908 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.727 -7.886 18.800 35.226 hybrid contribution 1.048 -0.046 0.155 1.060 sum -27.679 -7.931 18.955 34.472 Atomic orbital electron populations 1.24137 0.75304 1.09619 1.09721 1.44816 1.16099 1.19311 1.14678 0.72773 1.24195 1.05632 1.02710 0.87192 1.23898 0.94507 1.03845 0.88695 1.22774 0.93940 0.96626 1.00518 0.85727 1.23349 0.97345 0.96601 0.99127 1.22755 0.98550 0.98606 0.81172 0.89783 1.45658 1.19792 1.59560 1.10413 1.17197 0.81988 0.77198 0.85806 1.90869 1.48014 1.55364 1.51511 1.20174 0.96096 1.13909 0.88010 1.21219 0.97552 1.00315 0.94762 1.19928 0.98789 1.10397 0.94392 1.24684 1.00026 0.83470 1.08033 1.86470 1.38816 1.19135 1.93001 0.94047 0.85495 0.79454 0.70427 1.22325 0.93520 0.99670 0.92293 1.41754 1.18548 1.45711 1.04812 1.23745 0.98073 0.96913 1.00182 0.86031 0.85867 0.85480 0.85628 0.85773 0.86370 0.83455 0.83752 0.86444 0.90379 0.74883 0.86390 0.89432 0.75682 1.24672 1.19714 0.77010 0.71865 0.90842 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.00 9.19 127.69 1.17 4.17 16 2 N -0.37 24.87 0.66 -948.84 -0.62 24.24 16 3 H 0.44 -30.03 8.44 -89.70 -0.76 -30.79 16 4 C -0.06 3.48 8.98 127.69 1.15 4.63 16 5 C 0.01 -0.79 4.48 86.30 0.39 -0.40 16 6 C -0.12 6.41 3.58 -10.26 -0.04 6.38 16 7 H 0.12 -6.78 6.10 -2.39 -0.01 -6.80 16 8 C -0.13 5.66 7.39 31.13 0.23 5.89 16 9 C 0.09 -3.27 4.24 45.52 0.19 -3.08 16 10 H 0.08 -2.21 7.46 -2.39 -0.02 -2.23 16 11 N -0.70 21.34 5.35 -444.00 -2.38 18.96 16 12 C 0.59 -10.14 7.79 86.45 0.67 -9.46 16 13 O -0.58 3.57 16.48 -4.33 -0.07 3.50 16 14 C -0.07 1.18 7.06 40.35 0.28 1.46 16 15 C -0.11 1.13 10.59 22.57 0.24 1.37 16 16 C -0.23 3.39 5.44 -20.12 -0.11 3.28 16 17 C -0.05 0.66 3.02 71.24 0.22 0.87 16 18 O -0.57 5.58 12.88 -148.98 -1.92 3.66 16 19 Si 0.80 -13.49 30.59 68.60 2.10 -11.39 16 20 C 0.06 -1.39 10.45 83.48 0.87 -0.52 16 21 N -0.51 13.40 5.99 -183.62 -1.10 12.30 16 22 C -0.15 6.82 7.43 31.12 0.23 7.05 16 23 H 0.12 -7.80 8.14 -2.39 -0.02 -7.82 16 24 H 0.12 -7.86 8.14 -2.39 -0.02 -7.88 16 25 H 0.13 -8.28 8.11 -2.39 -0.02 -8.30 16 26 H 0.13 -7.86 8.14 -2.39 -0.02 -7.88 16 27 H 0.12 -7.79 8.11 -2.39 -0.02 -7.81 16 28 H 0.12 -7.26 6.10 -2.39 -0.01 -7.28 16 29 H 0.15 -9.64 7.79 -2.39 -0.02 -9.66 16 30 H 0.14 -9.28 8.09 -2.38 -0.02 -9.30 16 31 H 0.12 -5.74 8.08 -2.39 -0.02 -5.76 16 32 H 0.08 -3.20 8.14 -2.39 -0.02 -3.22 16 33 H 0.41 -15.77 7.86 -92.71 -0.73 -16.50 16 34 H 0.12 -0.54 8.06 -2.91 -0.02 -0.56 16 35 H 0.09 -0.76 7.96 -2.39 -0.02 -0.78 16 36 H 0.39 -7.48 8.70 -74.06 -0.64 -8.12 16 37 H -0.32 1.92 7.11 99.48 0.71 2.63 16 38 H -0.27 3.94 7.11 99.48 0.71 4.65 16 39 H 0.21 -6.45 6.19 -2.91 -0.02 -6.47 16 40 H 0.44 -15.78 8.19 -92.71 -0.76 -16.54 16 41 H 0.07 -3.04 8.14 -2.39 -0.02 -3.06 16 42 H 0.11 -5.53 7.90 -2.39 -0.02 -5.54 16 Total: 1.00 -91.84 339.62 -0.29 -92.13 By element: Atomic # 1 Polarization: -163.24 SS G_CDS: -1.79 Total: -165.03 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 5.50 Total: 21.64 kcal Atomic # 7 Polarization: 59.60 SS G_CDS: -4.10 Total: 55.50 kcal Atomic # 8 Polarization: 9.15 SS G_CDS: -1.99 Total: 7.16 kcal Atomic # 14 Polarization: -13.49 SS G_CDS: 2.10 Total: -11.39 kcal Total: -91.84 -0.29 -92.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.998 kcal (2) G-P(sol) polarization free energy of solvation -91.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds