Wall clock time and date at job start Sun Mar 7 2021 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 H 1.00895 * 109.47038 * 2 1 4 4 C 1.46892 * 109.46795 * 120.00059 * 2 1 3 5 5 C 1.46899 * 109.46866 * 239.99856 * 2 1 3 6 6 C 1.53002 * 109.47077 * 175.00226 * 5 2 1 7 7 H 1.08999 * 112.84592 * 316.19771 * 6 5 2 8 8 C 1.53777 * 113.61506 * 87.50133 * 6 5 2 9 9 C 1.53778 * 87.07938 * 139.98227 * 8 6 5 10 10 H 1.09005 * 113.69126 * 89.13059 * 9 8 6 11 11 N 1.46506 * 113.61605 * 220.02012 * 9 8 6 12 12 C 1.34780 * 120.00007 * 252.50109 * 11 9 8 13 13 O 1.21571 * 119.99968 * 359.97438 * 12 11 9 14 14 C 1.47720 * 119.99654 * 179.97438 * 12 11 9 15 15 C 1.39709 * 120.02134 * 179.97438 * 14 12 11 16 16 C 1.37666 * 119.97559 * 180.02562 * 15 14 12 17 17 C 1.39503 * 120.02396 * 0.02562 * 16 15 14 18 18 C 1.48272 * 119.97447 * 179.97438 * 17 16 15 19 19 C 1.39400 * 120.12510 * 179.97438 * 18 17 16 20 20 C 1.38004 * 119.86767 * 179.69636 * 19 18 17 21 21 C 1.38333 * 120.13170 * 0.26363 * 20 19 18 22 22 C 1.50691 * 119.87274 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47211 * 65.00273 * 22 21 20 24 24 Si 1.86300 * 109.47171 * 184.99687 * 22 21 20 25 25 C 1.38339 * 120.25314 * 359.97438 * 21 20 19 26 26 C 1.37998 * 120.12498 * 359.97438 * 25 21 20 27 27 C 1.39505 * 120.04716 * 0.25628 * 17 16 15 28 28 C 1.37666 * 120.02249 * 359.48306 * 27 17 16 29 29 C 1.53775 * 87.08551 * 334.56767 * 9 8 6 30 30 H 1.08995 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47050 * 300.00427 * 1 2 3 32 32 H 1.09005 * 109.47073 * 59.99356 * 1 2 3 33 33 H 1.09008 * 109.47634 * 60.00055 * 4 2 1 34 34 H 1.08999 * 109.47335 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47766 * 299.99915 * 4 2 1 36 36 H 1.09003 * 109.46972 * 55.00176 * 5 2 1 37 37 H 1.09001 * 109.47189 * 295.00511 * 5 2 1 38 38 H 1.09005 * 113.61347 * 25.43624 * 8 6 5 39 39 H 1.08992 * 113.61622 * 254.53393 * 8 6 5 40 40 H 0.96998 * 119.99531 * 72.49356 * 11 9 8 41 41 H 1.08007 * 120.01210 * 0.04601 * 15 14 12 42 42 H 1.07997 * 119.98578 * 179.97438 * 16 15 14 43 43 H 1.08002 * 120.06765 * 359.97438 * 19 18 17 44 44 H 1.07999 * 119.93347 * 180.27637 * 20 19 18 45 45 H 1.08994 * 109.47784 * 304.99911 * 22 21 20 46 46 H 0.96702 * 113.99781 * 59.99333 * 23 22 21 47 47 H 1.48509 * 109.99819 * 58.68527 * 24 22 21 48 48 H 1.48498 * 110.00243 * 180.02562 * 24 22 21 49 49 H 1.07994 * 119.93313 * 180.02562 * 25 21 20 50 50 H 1.08003 * 120.06095 * 180.02562 * 26 25 21 51 51 H 1.07999 * 119.98452 * 179.74552 * 27 17 16 52 52 H 1.08008 * 120.00675 * 180.27690 * 28 27 17 53 53 H 1.08997 * 113.61709 * 139.97241 * 29 9 8 54 54 H 1.08994 * 113.61977 * 270.80224 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9586 -0.6925 -1.1994 6 6 3.4835 -0.5846 -1.2639 7 1 3.8473 0.4155 -1.0285 8 6 4.2130 -1.7029 -0.5010 9 6 5.2159 -1.7359 -1.6663 10 1 6.0552 -1.0517 -1.5413 11 7 5.6356 -3.0886 -2.0412 12 6 6.8779 -3.5163 -1.7406 13 8 7.6503 -2.7795 -1.1587 14 6 7.3009 -4.8803 -2.1182 15 6 8.5886 -5.3241 -1.8073 16 6 8.9820 -6.5953 -2.1601 17 6 8.0955 -7.4401 -2.8283 18 6 8.5205 -8.8088 -3.2082 19 6 7.6370 -9.6558 -3.8755 20 6 8.0403 -10.9265 -4.2322 21 6 9.3165 -11.3622 -3.9241 22 6 9.7509 -12.7506 -4.3169 23 8 9.7814 -12.8550 -5.7418 24 14 11.4512 -13.0861 -3.6333 25 6 10.1959 -10.5277 -3.2576 26 6 9.8041 -9.2547 -2.8969 27 6 6.8114 -6.9960 -3.1444 28 6 6.4141 -5.7270 -2.7878 29 6 4.0890 -1.1739 -2.5488 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.5953 -1.7202 1.1994 34 1 3.0486 -0.6929 1.1992 35 1 1.5953 -0.1787 2.0894 36 1 1.5240 -0.2330 -2.0872 37 1 1.6702 -1.7428 -1.1558 38 1 3.6281 -2.6175 -0.4022 39 1 4.6500 -1.3749 0.4421 40 1 5.0194 -3.6762 -2.5057 41 1 9.2752 -4.6701 -1.2900 42 1 9.9776 -6.9383 -1.9202 43 1 6.6404 -9.3167 -4.1169 44 1 7.3582 -11.5820 -4.7532 45 1 9.0473 -13.4791 -3.9142 46 1 10.3881 -12.2346 -6.1687 47 1 11.4401 -12.9494 -2.1545 48 1 11.8914 -14.4522 -4.0142 49 1 11.1912 -10.8730 -3.0200 50 1 10.4916 -8.6039 -2.3770 51 1 6.1273 -7.6494 -3.6654 52 1 5.4184 -5.3850 -3.0287 53 1 4.4259 -0.4186 -3.2588 54 1 3.4712 -1.9437 -3.0111 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_13158362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:25:11 Heat of formation + Delta-G solvation = 119.654848 kcal Electronic energy + Delta-G solvation = -31539.026722 eV Core-core repulsion = 27333.423846 eV Total energy + Delta-G solvation = -4205.602876 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.25589 -41.43220 -40.75806 -39.60317 -38.80292 -37.53675 -34.97036 -33.90856 -32.59898 -31.61758 -31.01550 -29.95087 -29.48782 -27.15942 -26.69806 -25.84650 -24.72362 -24.68741 -23.47229 -22.62627 -22.20462 -21.40188 -20.99302 -19.20514 -19.07774 -18.43227 -18.08694 -17.76112 -17.46280 -17.04085 -16.75925 -16.38901 -16.19919 -16.11605 -15.90311 -15.84347 -15.43371 -15.08402 -14.99677 -14.90454 -14.58829 -14.35653 -14.23876 -14.09163 -13.91012 -13.62092 -13.57531 -13.52195 -13.40539 -13.28833 -13.23161 -13.06691 -12.84425 -12.76534 -12.57284 -12.33439 -12.15727 -11.98054 -11.78355 -11.63807 -11.50111 -11.10806 -10.80209 -10.45380 -10.12184 -10.09288 -9.99020 -9.10486 -5.05547 -0.72418 0.31894 0.37101 0.46689 1.04334 1.26675 1.57611 1.74306 1.92825 2.06432 2.57296 2.90023 2.96719 2.98721 3.21562 3.34331 3.38371 3.47092 3.51322 3.60092 3.64840 3.72672 3.74864 3.81446 3.84957 3.96434 3.98612 4.02937 4.16263 4.21877 4.23874 4.25691 4.33914 4.34366 4.41019 4.44069 4.48071 4.61321 4.64836 4.68135 4.70800 4.75592 4.77504 4.84543 4.86652 4.88249 4.89251 4.94863 5.05266 5.06508 5.09586 5.17196 5.17813 5.22653 5.38816 5.47403 5.51123 5.62268 5.76845 5.90006 6.41606 6.71966 7.10501 Molecular weight = 368.20amu Principal moments of inertia in cm(-1) A = 0.022133 B = 0.001418 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.803083 B =19735.864424 C =20332.165317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.370 5.370 3 H 0.438 0.562 4 C -0.057 4.057 5 C 0.012 3.988 6 C -0.116 4.116 7 H 0.126 0.874 8 C -0.152 4.152 9 C 0.092 3.908 10 H 0.085 0.915 11 N -0.701 5.701 12 C 0.558 3.442 13 O -0.583 6.583 14 C -0.155 4.155 15 C -0.074 4.074 16 C -0.127 4.127 17 C -0.023 4.023 18 C -0.062 4.062 19 C -0.105 4.105 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.071 4.071 23 O -0.555 6.555 24 Si 0.766 3.234 25 C -0.120 4.120 26 C -0.108 4.108 27 C -0.122 4.122 28 C -0.069 4.069 29 C -0.127 4.127 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.416 0.584 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.395 0.605 47 H -0.286 1.286 48 H -0.304 1.304 49 H 0.143 0.857 50 H 0.145 0.855 51 H 0.155 0.845 52 H 0.167 0.833 53 H 0.078 0.922 54 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.773 29.031 8.253 42.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.053 4.947 3 H 0.275 0.725 4 C -0.200 4.200 5 C -0.110 4.110 6 C -0.135 4.135 7 H 0.143 0.857 8 C -0.191 4.191 9 C -0.012 4.012 10 H 0.103 0.897 11 N -0.353 5.353 12 C 0.347 3.653 13 O -0.464 6.464 14 C -0.158 4.158 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.023 4.023 18 C -0.062 4.062 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.182 4.182 23 O -0.363 6.363 24 Si 0.673 3.327 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.087 4.087 29 C -0.166 4.166 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.255 0.745 41 H 0.143 0.857 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.149 0.851 45 H 0.125 0.875 46 H 0.245 0.755 47 H -0.213 1.213 48 H -0.233 1.233 49 H 0.160 0.840 50 H 0.163 0.837 51 H 0.173 0.827 52 H 0.184 0.816 53 H 0.097 0.903 54 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -29.307 28.362 9.293 41.829 hybrid contribution 0.152 -0.417 -0.004 0.443 sum -29.155 27.946 9.290 41.440 Atomic orbital electron populations 1.24132 0.75381 1.09535 1.09759 1.44835 1.16030 1.19300 1.14485 0.72483 1.24268 1.05544 1.02711 0.87447 1.23901 0.94695 1.03711 0.88679 1.22686 0.92875 1.00666 0.97238 0.85650 1.23865 0.97401 1.00095 0.97711 1.22761 0.96825 0.83172 0.98454 0.89710 1.45763 1.13352 1.16526 1.59682 1.18468 0.82437 0.86514 0.77890 1.90792 1.54300 1.57744 1.43558 1.20061 0.96164 0.94674 1.04942 1.21266 0.95527 0.95620 0.96870 1.21385 1.00706 0.93349 0.99020 1.19144 0.94613 0.92270 0.96284 1.18968 0.94554 0.93025 0.99620 1.21518 1.00327 0.93166 0.97291 1.21122 0.95659 0.96366 0.98974 1.20510 0.95379 0.96485 0.99613 1.25092 1.11369 0.95525 0.86179 1.86483 1.69018 1.63710 1.17089 0.93839 0.78761 0.81816 0.78240 1.21137 0.99551 0.94186 0.98852 1.21486 0.95887 0.96005 0.99234 1.21507 0.95411 0.96783 1.00295 1.21468 0.99761 0.92664 0.94824 1.23338 0.95515 1.01276 0.96454 0.86202 0.85844 0.85396 0.85955 0.86747 0.85602 0.83186 0.84164 0.86989 0.90502 0.74463 0.85733 0.84090 0.83212 0.85114 0.87547 0.75476 1.21343 1.23273 0.83961 0.83720 0.82711 0.81564 0.90326 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.99 9.19 127.69 1.17 4.16 16 2 N -0.37 24.53 0.66 -948.84 -0.62 23.90 16 3 H 0.44 -30.48 8.40 -89.70 -0.75 -31.24 16 4 C -0.06 3.54 8.57 127.69 1.09 4.63 16 5 C 0.01 -0.76 4.57 86.30 0.39 -0.36 16 6 C -0.12 6.15 3.31 -10.27 -0.03 6.11 16 7 H 0.13 -6.82 8.09 -2.39 -0.02 -6.84 16 8 C -0.15 6.85 5.69 31.12 0.18 7.03 16 9 C 0.09 -3.20 4.24 45.51 0.19 -3.00 16 10 H 0.08 -2.24 7.46 -2.38 -0.02 -2.26 16 11 N -0.70 20.68 5.30 -443.01 -2.35 18.33 16 12 C 0.56 -9.89 7.77 86.75 0.67 -9.22 16 13 O -0.58 4.64 15.93 -3.94 -0.06 4.58 16 14 C -0.16 2.74 5.88 -20.06 -0.12 2.62 16 15 C -0.07 1.00 9.58 22.49 0.22 1.22 16 16 C -0.13 1.89 9.41 22.44 0.21 2.10 16 17 C -0.02 0.36 5.88 -20.00 -0.12 0.25 16 18 C -0.06 0.88 5.88 -20.05 -0.12 0.77 16 19 C -0.11 1.61 9.43 22.49 0.21 1.82 16 20 C -0.10 1.31 9.67 22.24 0.21 1.53 16 21 C -0.12 1.44 5.36 -19.82 -0.11 1.34 16 22 C -0.07 0.80 2.80 71.23 0.20 1.00 16 23 O -0.55 5.63 12.83 -148.98 -1.91 3.72 16 24 Si 0.77 -8.88 29.79 68.60 2.04 -6.84 16 25 C -0.12 1.64 8.65 22.24 0.19 1.83 16 26 C -0.11 1.54 9.43 22.49 0.21 1.75 16 27 C -0.12 2.54 9.41 22.44 0.21 2.75 16 28 C -0.07 1.63 9.52 22.49 0.21 1.84 16 29 C -0.13 5.64 7.39 31.12 0.23 5.87 16 30 H 0.12 -7.61 8.14 -2.39 -0.02 -7.63 16 31 H 0.12 -7.83 8.14 -2.39 -0.02 -7.85 16 32 H 0.13 -8.27 8.11 -2.38 -0.02 -8.29 16 33 H 0.12 -7.51 8.11 -2.38 -0.02 -7.53 16 34 H 0.11 -6.71 5.13 -2.39 -0.01 -6.72 16 35 H 0.13 -7.75 8.14 -2.39 -0.02 -7.77 16 36 H 0.15 -9.68 8.09 -2.39 -0.02 -9.70 16 37 H 0.14 -8.91 7.79 -2.39 -0.02 -8.93 16 38 H 0.11 -5.35 7.90 -2.38 -0.02 -5.37 16 39 H 0.08 -3.24 7.18 -2.39 -0.02 -3.26 16 40 H 0.42 -15.05 6.74 -92.71 -0.63 -15.68 16 41 H 0.12 -1.43 7.64 -2.91 -0.02 -1.45 16 42 H 0.14 -2.43 6.19 -2.91 -0.02 -2.45 16 43 H 0.15 -3.11 6.19 -2.91 -0.02 -3.13 16 44 H 0.13 -1.77 8.06 -2.91 -0.02 -1.79 16 45 H 0.11 -1.06 7.96 -2.39 -0.02 -1.08 16 46 H 0.40 -7.13 8.70 -74.06 -0.64 -7.78 16 47 H -0.29 1.96 7.11 99.48 0.71 2.67 16 48 H -0.30 0.89 7.11 99.48 0.71 1.60 16 49 H 0.14 -2.42 4.89 -2.91 -0.01 -2.44 16 50 H 0.15 -2.57 6.19 -2.91 -0.02 -2.59 16 51 H 0.16 -3.93 6.19 -2.91 -0.02 -3.95 16 52 H 0.17 -5.51 6.39 -2.91 -0.02 -5.53 16 53 H 0.08 -3.18 8.14 -2.39 -0.02 -3.20 16 54 H 0.12 -5.50 8.08 -2.39 -0.02 -5.52 16 Total: 1.00 -87.36 422.40 1.38 -85.98 By element: Atomic # 1 Polarization: -164.67 SS G_CDS: -1.04 Total: -165.71 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 5.33 Total: 36.03 kcal Atomic # 7 Polarization: 45.21 SS G_CDS: -2.97 Total: 42.24 kcal Atomic # 8 Polarization: 10.27 SS G_CDS: -1.97 Total: 8.30 kcal Atomic # 14 Polarization: -8.88 SS G_CDS: 2.04 Total: -6.84 kcal Total: -87.36 1.38 -85.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_13158362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.636 kcal (2) G-P(sol) polarization free energy of solvation -87.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds