Wall clock time and date at job start Sun Mar 7 2021 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00901 * 109.47215 * 2 1 4 4 C 1.46902 * 109.46688 * 240.00130 * 2 1 3 5 5 C 1.46901 * 109.47230 * 120.00743 * 2 1 3 6 6 C 1.52998 * 109.46683 * 184.99843 * 5 2 1 7 7 H 1.08996 * 112.85127 * 316.18661 * 6 5 2 8 8 C 1.53777 * 113.61659 * 87.50342 * 6 5 2 9 9 C 1.53783 * 87.08459 * 139.97769 * 8 6 5 10 10 H 1.08993 * 113.61820 * 89.11156 * 9 8 6 11 11 N 1.46498 * 113.69244 * 220.00714 * 9 8 6 12 12 C 1.34770 * 120.00295 * 252.53291 * 11 9 8 13 13 O 1.21596 * 119.99950 * 359.97438 * 12 11 9 14 14 C 1.47539 * 120.00113 * 179.97438 * 12 11 9 15 15 C 1.40145 * 120.19090 * 180.02562 * 14 12 11 16 16 O 1.35652 * 120.14617 * 0.02562 * 15 14 12 17 17 C 1.38705 * 119.69909 * 180.02562 * 15 14 12 18 18 C 1.38055 * 120.08343 * 0.02562 * 17 15 14 19 19 C 1.50699 * 119.80315 * 180.02562 * 18 17 15 20 20 O 1.42904 * 109.47531 * 64.99361 * 19 18 17 21 21 Si 1.86303 * 109.47313 * 184.99766 * 19 18 17 22 22 C 1.38551 * 120.39151 * 0.02562 * 18 17 15 23 23 C 1.37785 * 120.29854 * 359.67619 * 22 18 17 24 24 C 1.53785 * 87.07877 * 334.56441 * 9 8 6 25 25 H 1.09002 * 109.47742 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46736 * 299.99613 * 1 2 3 27 27 H 1.09000 * 109.47357 * 59.99578 * 1 2 3 28 28 H 1.08992 * 109.47412 * 300.00019 * 4 2 1 29 29 H 1.09004 * 109.46739 * 60.00523 * 4 2 1 30 30 H 1.09001 * 109.47165 * 179.97438 * 4 2 1 31 31 H 1.08995 * 109.46814 * 304.99109 * 5 2 1 32 32 H 1.08993 * 109.46905 * 64.99501 * 5 2 1 33 33 H 1.08998 * 113.61388 * 254.52083 * 8 6 5 34 34 H 1.08995 * 113.61861 * 25.42728 * 8 6 5 35 35 H 0.97009 * 119.99353 * 72.53226 * 11 9 8 36 36 H 0.96698 * 113.99918 * 90.00421 * 16 15 14 37 37 H 1.08004 * 119.95732 * 180.02562 * 17 15 14 38 38 H 1.09003 * 109.47364 * 304.99478 * 19 18 17 39 39 H 0.96696 * 114.00498 * 179.97438 * 20 19 18 40 40 H 1.48498 * 109.99474 * 299.99841 * 21 19 18 41 41 H 1.48498 * 109.99834 * 61.31621 * 21 19 18 42 42 H 1.08000 * 119.84716 * 179.97438 * 22 18 17 43 43 H 1.07997 * 120.04749 * 180.31802 * 23 22 18 44 44 H 1.08997 * 113.61903 * 270.88246 * 24 9 8 45 45 H 1.09001 * 113.69063 * 139.99086 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9585 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1993 6 6 3.4835 -0.5847 1.2637 7 1 3.9615 -0.7640 0.3007 8 6 3.9817 0.6849 1.9740 9 6 5.0668 -0.1952 2.6166 10 1 5.9786 -0.2669 2.0237 11 7 5.3263 0.1228 4.0229 12 6 6.4665 0.7503 4.3727 13 8 7.2803 1.0521 3.5210 14 6 6.7275 1.0711 5.7889 15 6 7.9117 1.7240 6.1570 16 8 8.8237 2.0648 5.2124 17 6 8.1469 2.0202 7.4915 18 6 7.2180 1.6723 8.4517 19 6 7.4797 1.9976 9.8997 20 8 7.5087 3.4160 10.0716 21 14 6.1258 1.2719 10.9538 22 6 6.0465 1.0258 8.0919 23 6 5.7938 0.7293 6.7703 24 6 4.1092 -1.3824 2.4200 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.5952 -1.7201 -1.1995 29 1 1.5952 -0.1785 -2.0894 30 1 3.0485 -0.6921 -1.1998 31 1 1.5242 -0.2331 2.0871 32 1 1.6702 -1.7428 1.1556 33 1 4.3776 1.4390 1.2938 34 1 3.2690 1.0925 2.6909 35 1 4.6772 -0.1183 4.7024 36 1 8.6894 2.9450 4.8354 37 1 9.0579 2.5236 7.7798 38 1 8.4390 1.5757 10.1993 39 1 7.6726 3.6987 10.9816 40 1 4.8126 1.8392 10.5553 41 1 6.1060 -0.2059 10.8084 42 1 5.3261 0.7573 8.8504 43 1 4.8771 0.2299 6.4938 44 1 3.4313 -1.5401 3.2588 45 1 4.6066 -2.2979 2.1000 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:26:07 Heat of formation + Delta-G solvation = 53.006558 kcal Electronic energy + Delta-G solvation = -25383.134975 eV Core-core repulsion = 21679.939620 eV Total energy + Delta-G solvation = -3703.195355 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25707 -41.69868 -40.34280 -39.03717 -38.39137 -37.27293 -34.90804 -32.89729 -31.30040 -30.11837 -29.41272 -27.67682 -26.89612 -25.81482 -24.28285 -24.02041 -22.96994 -21.71827 -20.99767 -19.42326 -19.27839 -18.80124 -18.48262 -18.02196 -17.64920 -17.22552 -16.74454 -16.61730 -16.43116 -16.10660 -15.99223 -15.59216 -15.31048 -14.75679 -14.61163 -14.22565 -14.08270 -13.86967 -13.61765 -13.52966 -13.49302 -13.44299 -13.27295 -13.20634 -13.05206 -12.97435 -12.53639 -12.25428 -12.17050 -11.91987 -11.77289 -11.54435 -11.00963 -10.49425 -10.27165 -10.11711 -9.92967 -4.91393 -0.57953 -0.04641 1.00122 1.23959 1.52786 1.65834 1.88680 1.96514 2.39047 2.89142 2.93788 2.98099 3.13768 3.21699 3.36283 3.39584 3.45179 3.56927 3.69818 3.69989 3.76127 3.83495 3.97936 4.08472 4.13688 4.20527 4.23223 4.32511 4.34468 4.47898 4.49798 4.58176 4.64345 4.66822 4.67597 4.76768 4.78461 4.83534 4.85969 4.91430 4.97471 5.01200 5.08503 5.13717 5.39724 5.46901 6.34081 6.57230 6.80241 7.05136 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.002861 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.078906 B = 9785.383451 C =10633.449302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 H 0.436 0.564 4 C -0.055 4.055 5 C 0.012 3.988 6 C -0.119 4.119 7 H 0.127 0.873 8 C -0.151 4.151 9 C 0.094 3.906 10 H 0.085 0.915 11 N -0.703 5.703 12 C 0.560 3.440 13 O -0.561 6.561 14 C -0.183 4.183 15 C 0.155 3.845 16 O -0.495 6.495 17 C -0.142 4.142 18 C -0.041 4.041 19 C -0.095 4.095 20 O -0.564 6.564 21 Si 0.774 3.226 22 C -0.155 4.155 23 C -0.048 4.048 24 C -0.128 4.128 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.409 0.591 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.406 0.594 40 H -0.280 1.280 41 H -0.282 1.282 42 H 0.137 0.863 43 H 0.175 0.825 44 H 0.115 0.885 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.321 -5.454 -18.217 30.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.051 4.949 3 H 0.272 0.728 4 C -0.197 4.197 5 C -0.110 4.110 6 C -0.137 4.137 7 H 0.144 0.856 8 C -0.189 4.189 9 C -0.010 4.010 10 H 0.103 0.897 11 N -0.356 5.356 12 C 0.347 3.653 13 O -0.440 6.440 14 C -0.187 4.187 15 C 0.109 3.891 16 O -0.308 6.308 17 C -0.160 4.160 18 C -0.041 4.041 19 C -0.204 4.204 20 O -0.374 6.374 21 Si 0.677 3.323 22 C -0.172 4.172 23 C -0.066 4.066 24 C -0.166 4.166 25 H 0.140 0.860 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.253 0.747 36 H 0.269 0.731 37 H 0.155 0.845 38 H 0.108 0.892 39 H 0.257 0.743 40 H -0.207 1.207 41 H -0.209 1.209 42 H 0.155 0.845 43 H 0.192 0.808 44 H 0.133 0.867 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.460 -6.520 -19.361 31.869 hybrid contribution 0.883 0.812 -0.129 1.206 sum -23.577 -5.708 -19.489 31.118 Atomic orbital electron populations 1.24138 0.75325 1.09633 1.09704 1.44812 1.16086 1.19304 1.14669 0.72776 1.24201 1.05655 1.02719 0.87142 1.23889 0.94567 1.03838 0.88688 1.22772 0.93888 0.96580 1.00509 0.85556 1.23738 0.98089 0.96945 1.00139 1.22740 0.98500 0.98530 0.81233 0.89689 1.45760 1.20168 1.59309 1.10348 1.18125 0.82053 0.77808 0.87288 1.90827 1.46980 1.54058 1.52180 1.20503 0.96346 1.07284 0.94536 1.18781 0.87301 0.94676 0.88347 1.84717 1.50594 1.40429 1.55064 1.21423 1.01185 1.01767 0.91668 1.19835 0.93737 0.95481 0.95095 1.25064 1.11237 0.87594 0.96486 1.86419 1.95787 1.19017 1.36193 0.93677 0.74548 0.76474 0.87557 1.21099 0.96949 1.01763 0.97433 1.21404 0.98546 0.95896 0.90794 1.23353 0.97430 0.96719 0.99113 0.86015 0.85593 0.85769 0.85772 0.85557 0.86336 0.83651 0.83731 0.90672 0.87050 0.74676 0.73111 0.84454 0.89199 0.74285 1.20694 1.20858 0.84530 0.80771 0.86680 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.96 9.19 127.69 1.17 4.13 16 2 N -0.37 24.42 0.66 -948.86 -0.62 23.80 16 3 H 0.44 -29.56 8.44 -89.69 -0.76 -30.32 16 4 C -0.05 3.43 8.97 127.69 1.15 4.58 16 5 C 0.01 -0.75 4.48 86.30 0.39 -0.36 16 6 C -0.12 6.18 3.58 -10.27 -0.04 6.14 16 7 H 0.13 -6.74 6.10 -2.39 -0.01 -6.76 16 8 C -0.15 6.58 7.43 31.12 0.23 6.81 16 9 C 0.09 -3.12 4.24 45.52 0.19 -2.93 16 10 H 0.08 -2.13 7.46 -2.39 -0.02 -2.14 16 11 N -0.70 19.31 5.31 -443.20 -2.35 16.95 16 12 C 0.56 -8.58 7.76 86.70 0.67 -7.91 16 13 O -0.56 3.63 14.76 16.90 0.25 3.88 16 14 C -0.18 2.56 5.89 -20.01 -0.12 2.44 16 15 C 0.16 -1.40 6.72 22.84 0.15 -1.25 16 16 O -0.49 3.43 11.58 -68.76 -0.80 2.64 16 17 C -0.14 1.35 9.60 22.34 0.21 1.57 16 18 C -0.04 0.48 5.39 -19.83 -0.11 0.38 16 19 C -0.09 1.47 2.78 71.24 0.20 1.67 16 20 O -0.56 8.20 12.81 -148.98 -1.91 6.29 16 21 Si 0.77 -14.21 29.83 68.60 2.05 -12.16 16 22 C -0.16 2.37 8.64 22.24 0.19 2.56 16 23 C -0.05 0.94 9.53 22.52 0.21 1.15 16 24 C -0.13 5.48 7.39 31.12 0.23 5.71 16 25 H 0.12 -7.68 8.14 -2.39 -0.02 -7.70 16 26 H 0.13 -8.04 8.11 -2.38 -0.02 -8.06 16 27 H 0.12 -7.82 8.14 -2.39 -0.02 -7.84 16 28 H 0.12 -7.68 8.11 -2.39 -0.02 -7.70 16 29 H 0.13 -7.83 8.14 -2.39 -0.02 -7.84 16 30 H 0.12 -7.20 6.10 -2.39 -0.01 -7.21 16 31 H 0.15 -9.22 7.79 -2.39 -0.02 -9.24 16 32 H 0.14 -9.07 8.09 -2.39 -0.02 -9.09 16 33 H 0.07 -3.05 8.14 -2.39 -0.02 -3.06 16 34 H 0.11 -5.17 7.90 -2.39 -0.02 -5.19 16 35 H 0.41 -14.07 6.76 -92.70 -0.63 -14.70 16 36 H 0.41 -5.77 9.06 -74.06 -0.67 -6.44 16 37 H 0.14 -1.32 8.06 -2.91 -0.02 -1.34 16 38 H 0.09 -1.60 7.96 -2.39 -0.02 -1.62 16 39 H 0.41 -9.80 8.74 -74.06 -0.65 -10.44 16 40 H -0.28 3.75 7.04 99.48 0.70 4.45 16 41 H -0.28 3.85 7.11 99.48 0.71 4.55 16 42 H 0.14 -2.39 4.83 -2.91 -0.01 -2.40 16 43 H 0.18 -5.18 6.40 -2.91 -0.02 -5.20 16 44 H 0.11 -5.32 8.08 -2.39 -0.02 -5.34 16 45 H 0.08 -3.09 8.14 -2.39 -0.02 -3.11 16 Total: 1.00 -87.37 359.40 -0.27 -87.64 By element: Atomic # 1 Polarization: -152.10 SS G_CDS: -1.63 Total: -153.73 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 4.75 Total: 24.69 kcal Atomic # 7 Polarization: 43.73 SS G_CDS: -2.98 Total: 40.75 kcal Atomic # 8 Polarization: 15.26 SS G_CDS: -2.45 Total: 12.81 kcal Atomic # 14 Polarization: -14.21 SS G_CDS: 2.05 Total: -12.16 kcal Total: -87.37 -0.27 -87.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.645 kcal (2) G-P(sol) polarization free energy of solvation -87.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds