Wall clock time and date at job start Sun Mar 7 2021 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00899 * 109.46920 * 2 1 4 4 C 1.46900 * 109.47002 * 119.99497 * 2 1 3 5 5 C 1.46891 * 109.47291 * 239.99291 * 2 1 3 6 6 C 1.53005 * 109.46866 * 65.00222 * 5 2 1 7 7 H 1.09000 * 112.85133 * 43.80361 * 6 5 2 8 8 C 1.53787 * 113.61178 * 175.00030 * 6 5 2 9 9 C 1.53784 * 87.07923 * 140.06478 * 8 6 5 10 10 H 1.09002 * 113.61478 * 89.11632 * 9 8 6 11 11 N 1.46497 * 113.61569 * 220.01663 * 9 8 6 12 12 C 1.34769 * 120.00274 * 204.99925 * 11 9 8 13 13 O 1.21611 * 119.99948 * 0.02562 * 12 11 9 14 14 C 1.47384 * 120.00211 * 179.97438 * 12 11 9 15 15 C 1.36418 * 127.19089 * 0.02809 * 14 12 11 16 16 O 1.33649 * 108.39813 * 179.97438 * 15 14 12 17 17 C 1.34219 * 110.90768 * 0.02562 * 16 15 14 18 18 C 1.50703 * 125.43508 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46746 * 119.97397 * 18 17 16 20 20 Si 1.86294 * 109.47358 * 359.97218 * 18 17 16 21 21 C 1.34175 * 109.12110 * 359.70439 * 17 16 15 22 22 C 1.53779 * 87.08045 * 334.56667 * 9 8 6 23 23 H 1.08992 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46911 * 300.00426 * 1 2 3 25 25 H 1.08995 * 109.46861 * 60.00399 * 1 2 3 26 26 H 1.09001 * 109.47119 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47350 * 299.99808 * 4 2 1 28 28 H 1.09002 * 109.47603 * 59.99992 * 4 2 1 29 29 H 1.08995 * 109.47633 * 305.00449 * 5 2 1 30 30 H 1.09006 * 109.47627 * 184.99903 * 5 2 1 31 31 H 1.09004 * 113.61202 * 254.61231 * 8 6 5 32 32 H 1.08994 * 113.61447 * 25.51662 * 8 6 5 33 33 H 0.97009 * 119.99534 * 24.99936 * 11 9 8 34 34 H 1.08002 * 125.79791 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.46699 * 239.96862 * 18 17 16 36 36 H 0.96696 * 113.99827 * 299.99551 * 19 18 17 37 37 H 1.48503 * 110.00070 * 179.97438 * 20 18 17 38 38 H 1.48493 * 110.00261 * 301.32275 * 20 18 17 39 39 H 1.08002 * 127.02147 * 180.27359 * 21 17 16 40 40 H 1.09006 * 113.61307 * 270.88660 * 22 9 8 41 41 H 1.08999 * 113.69146 * 139.99146 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6924 1.1995 5 6 1.9587 -0.6926 -1.1993 6 6 1.5539 0.0975 -2.4454 7 1 1.7120 1.1705 -2.3362 8 6 2.1235 -0.4792 -3.7524 9 6 0.7631 -0.1595 -4.3941 10 1 0.7049 0.8432 -4.8177 11 7 0.2908 -1.1959 -5.3155 12 6 -0.5693 -0.8784 -6.3033 13 8 -0.9531 0.2686 -6.4300 14 6 -1.0440 -1.9210 -7.2306 15 6 -0.7111 -3.2439 -7.2242 16 8 -1.3561 -3.8461 -8.2280 17 6 -2.1105 -2.9682 -8.9075 18 6 -2.9719 -3.2956 -10.1000 19 8 -4.3336 -2.9772 -9.8057 20 14 -2.8290 -5.1118 -10.4895 21 6 -1.9799 -1.7539 -8.3520 22 6 0.1606 -0.2683 -2.9835 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.0486 -0.6920 1.1998 27 1 1.5953 -0.1785 2.0895 28 1 1.5953 -1.7201 1.1997 29 1 1.5241 -1.6911 -1.2452 30 1 3.0450 -0.7708 -1.1557 31 1 2.9480 0.1032 -4.1638 32 1 2.3419 -1.5457 -3.7003 33 1 0.5973 -2.1108 -5.2146 34 1 -0.0410 -3.7234 -6.5260 35 1 -2.6399 -2.7125 -10.9590 36 1 -4.6961 -3.4604 -9.0506 37 1 -3.6743 -5.4476 -11.6633 38 1 -1.4127 -5.4620 -10.7661 39 1 -2.4618 -0.8398 -8.6661 40 1 -0.1576 -1.2774 -2.7212 41 1 -0.6000 0.4835 -2.7729 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:26:29 Heat of formation + Delta-G solvation = 80.365268 kcal Electronic energy + Delta-G solvation = -22067.351126 eV Core-core repulsion = 18649.105893 eV Total energy + Delta-G solvation = -3418.245233 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.75709 -42.21569 -40.75212 -38.98862 -38.06204 -34.93470 -33.82557 -31.85161 -30.07070 -29.48350 -26.90834 -26.68596 -26.03491 -25.02638 -23.19340 -22.35507 -21.35440 -20.70112 -19.30971 -19.06898 -18.09089 -17.79912 -17.53237 -17.48935 -17.28957 -16.70957 -16.20507 -16.03386 -15.91673 -15.63476 -14.90358 -14.49742 -14.29950 -14.07840 -13.91676 -13.66676 -13.54925 -13.51337 -13.39904 -13.27571 -13.06724 -12.86858 -12.83961 -12.33520 -12.27872 -11.78565 -11.50208 -11.24376 -11.00618 -10.68939 -10.15353 -9.80207 -5.04025 0.23318 0.76682 1.05261 1.14251 1.48107 1.77495 1.92997 2.04916 2.19823 2.91098 2.98427 3.21898 3.26783 3.35235 3.46411 3.48576 3.55188 3.73583 3.78200 3.93685 3.99011 4.17028 4.22864 4.23499 4.33445 4.38233 4.42178 4.46304 4.50552 4.69290 4.72195 4.76688 4.78528 4.84997 4.87041 4.89987 4.95377 5.07162 5.08602 5.16979 5.51169 5.81263 6.43588 6.59158 7.12542 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035336 B = 0.003042 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.199187 B = 9202.236327 C = 9341.350781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.370 5.370 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.013 3.987 6 C -0.117 4.117 7 H 0.123 0.877 8 C -0.125 4.125 9 C 0.093 3.907 10 H 0.080 0.920 11 N -0.698 5.698 12 C 0.587 3.413 13 O -0.590 6.590 14 C -0.273 4.273 15 C 0.069 3.931 16 O -0.166 6.166 17 C -0.052 4.052 18 C -0.037 4.037 19 O -0.545 6.545 20 Si 0.799 3.201 21 C -0.156 4.156 22 C -0.151 4.151 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.270 0.730 35 H 0.126 0.874 36 H 0.400 0.600 37 H -0.293 1.293 38 H -0.286 1.286 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.883 0.515 32.172 34.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 N 0.053 4.947 3 H 0.275 0.725 4 C -0.188 4.188 5 C -0.109 4.109 6 C -0.136 4.136 7 H 0.141 0.859 8 C -0.164 4.164 9 C -0.011 4.011 10 H 0.099 0.901 11 N -0.350 5.350 12 C 0.376 3.624 13 O -0.471 6.471 14 C -0.277 4.277 15 C -0.001 4.001 16 O -0.062 6.062 17 C -0.100 4.100 18 C -0.147 4.147 19 O -0.354 6.354 20 Si 0.703 3.297 21 C -0.176 4.176 22 C -0.190 4.190 23 H 0.142 0.858 24 H 0.143 0.857 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.257 0.743 34 H 0.285 0.715 35 H 0.143 0.857 36 H 0.251 0.749 37 H -0.221 1.221 38 H -0.213 1.213 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.836 0.565 30.933 33.495 hybrid contribution 0.080 1.277 -0.774 1.496 sum 12.916 1.842 30.158 32.859 Atomic orbital electron populations 1.24272 0.76793 1.09683 1.09240 1.44842 1.15528 1.19573 1.14756 0.72543 1.24125 1.05779 1.02372 0.86488 1.23897 1.06142 0.99334 0.81530 1.22691 0.95880 1.02012 0.93059 0.85877 1.23343 0.95163 1.04054 0.93851 1.22736 0.97142 0.92230 0.89032 0.90133 1.45611 1.45689 1.13507 1.30203 1.17479 0.78386 0.86390 0.80132 1.90808 1.59437 1.22825 1.74031 1.21541 1.07867 0.95506 1.02800 1.25414 0.94917 0.90304 0.89507 1.83723 1.47669 1.38591 1.36174 1.22655 0.99983 0.88238 0.99165 1.24594 0.81747 1.15114 0.93220 1.86562 1.22646 1.70703 1.55480 0.93318 0.78413 0.73482 0.84453 1.22560 1.00153 0.98201 0.96704 1.23867 0.96944 1.04320 0.93820 0.85774 0.85675 0.86812 0.85477 0.85931 0.86082 0.83938 0.83229 0.90506 0.86253 0.74313 0.71460 0.85657 0.74876 1.22074 1.21259 0.84397 0.86634 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.58 8.57 127.69 1.09 4.67 16 2 N -0.37 24.73 0.66 -948.87 -0.62 24.11 16 3 H 0.44 -30.54 8.40 -89.69 -0.75 -31.30 16 4 C -0.05 2.98 9.19 127.69 1.17 4.16 16 5 C 0.01 -0.81 4.57 86.31 0.39 -0.42 16 6 C -0.12 6.30 3.30 -10.26 -0.03 6.26 16 7 H 0.12 -6.70 8.09 -2.39 -0.02 -6.72 16 8 C -0.13 5.66 7.39 31.12 0.23 5.89 16 9 C 0.09 -3.26 4.24 45.52 0.19 -3.07 16 10 H 0.08 -2.09 7.46 -2.39 -0.02 -2.11 16 11 N -0.70 21.39 5.35 -443.35 -2.37 19.02 16 12 C 0.59 -10.14 7.81 86.65 0.68 -9.47 16 13 O -0.59 3.41 16.58 -4.07 -0.07 3.34 16 14 C -0.27 4.78 6.31 -18.99 -0.12 4.66 16 15 C 0.07 -1.76 11.61 67.39 0.78 -0.98 16 16 O -0.17 3.24 8.89 4.46 0.04 3.28 16 17 C -0.05 0.77 6.20 24.76 0.15 0.92 16 18 C -0.04 0.55 2.97 71.24 0.21 0.76 16 19 O -0.55 7.39 12.86 -148.98 -1.92 5.47 16 20 Si 0.80 -12.80 32.09 68.60 2.20 -10.60 16 21 C -0.16 1.77 10.87 23.65 0.26 2.03 16 22 C -0.15 6.90 5.70 31.12 0.18 7.08 16 23 H 0.12 -7.72 8.11 -2.39 -0.02 -7.74 16 24 H 0.12 -7.75 8.14 -2.39 -0.02 -7.76 16 25 H 0.11 -6.70 5.13 -2.39 -0.01 -6.72 16 26 H 0.13 -8.26 8.11 -2.39 -0.02 -8.28 16 27 H 0.12 -7.81 8.14 -2.39 -0.02 -7.83 16 28 H 0.12 -7.77 8.14 -2.39 -0.02 -7.79 16 29 H 0.14 -9.22 7.79 -2.39 -0.02 -9.24 16 30 H 0.15 -9.75 8.09 -2.38 -0.02 -9.77 16 31 H 0.08 -3.13 8.14 -2.39 -0.02 -3.15 16 32 H 0.12 -5.85 8.08 -2.39 -0.02 -5.87 16 33 H 0.42 -16.32 7.70 -92.70 -0.71 -17.03 16 34 H 0.27 -10.51 7.47 -2.91 -0.02 -10.53 16 35 H 0.13 -1.70 7.96 -2.39 -0.02 -1.72 16 36 H 0.40 -8.96 8.70 -74.06 -0.64 -9.60 16 37 H -0.29 2.38 7.11 99.48 0.71 3.08 16 38 H -0.29 3.01 7.11 99.48 0.71 3.72 16 39 H 0.14 -1.00 8.06 -2.91 -0.02 -1.02 16 40 H 0.12 -5.68 7.90 -2.38 -0.02 -5.70 16 41 H 0.07 -3.17 7.18 -2.39 -0.02 -3.19 16 Total: 1.00 -90.62 336.21 1.43 -89.19 By element: Atomic # 1 Polarization: -155.26 SS G_CDS: -1.02 Total: -156.28 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 5.19 Total: 22.49 kcal Atomic # 7 Polarization: 46.12 SS G_CDS: -2.99 Total: 43.12 kcal Atomic # 8 Polarization: 14.03 SS G_CDS: -1.94 Total: 12.09 kcal Atomic # 14 Polarization: -12.80 SS G_CDS: 2.20 Total: -10.60 kcal Total: -90.62 1.43 -89.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.553 kcal (2) G-P(sol) polarization free energy of solvation -90.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds