Wall clock time and date at job start Sun Mar 7 2021 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 H 1.00902 * 109.47062 * 2 1 4 4 C 1.46907 * 109.46847 * 119.99514 * 2 1 3 5 5 C 1.46902 * 109.47403 * 239.99365 * 2 1 3 6 6 C 1.53000 * 109.46967 * 64.99993 * 5 2 1 7 7 H 1.09005 * 112.84545 * 43.80567 * 6 5 2 8 8 C 1.53778 * 113.61519 * 175.00068 * 6 5 2 9 9 C 1.53783 * 87.08058 * 139.98547 * 8 6 5 10 10 H 1.08993 * 113.61508 * 89.19979 * 9 8 6 11 11 N 1.46498 * 113.61013 * 220.02142 * 9 8 6 12 12 C 1.34781 * 119.99962 * 203.46771 * 11 9 8 13 13 O 1.21284 * 119.99655 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00408 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.47265 * 180.02562 * 14 12 11 16 16 O 1.42901 * 109.47022 * 179.97438 * 15 14 12 17 17 C 1.35897 * 117.00049 * 180.02562 * 16 15 14 18 18 C 1.38707 * 120.05728 * 180.02562 * 17 16 15 19 19 C 1.38172 * 119.94457 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.97101 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.46949 * 64.98112 * 20 19 18 22 22 Si 1.86300 * 109.47178 * 184.97899 * 20 19 18 23 23 C 1.38241 * 120.05236 * 359.97438 * 19 18 17 24 24 C 1.38288 * 120.11556 * 359.97438 * 23 19 18 25 25 C 1.38119 * 120.05366 * 0.28328 * 24 23 19 26 26 C 1.53780 * 87.17094 * 334.60939 * 9 8 6 27 27 H 1.09000 * 109.47166 * 300.00631 * 1 2 3 28 28 H 1.09004 * 109.46733 * 60.00536 * 1 2 3 29 29 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47156 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47119 * 299.99884 * 4 2 1 32 32 H 1.09002 * 109.46708 * 60.00361 * 4 2 1 33 33 H 1.09000 * 109.46835 * 305.00858 * 5 2 1 34 34 H 1.08995 * 109.47260 * 185.00410 * 5 2 1 35 35 H 1.08998 * 113.61407 * 25.43450 * 8 6 5 36 36 H 1.09001 * 113.68913 * 254.54301 * 8 6 5 37 37 H 0.97003 * 120.00767 * 23.46661 * 11 9 8 38 38 H 1.08997 * 109.47103 * 60.00123 * 14 12 11 39 39 H 1.09005 * 109.46821 * 299.99997 * 14 12 11 40 40 H 1.09005 * 109.46978 * 60.00214 * 15 14 12 41 41 H 1.08996 * 109.47191 * 299.99943 * 15 14 12 42 42 H 1.07998 * 120.02676 * 0.04220 * 18 17 16 43 43 H 1.09000 * 109.47732 * 304.98426 * 20 19 18 44 44 H 0.96700 * 114.00504 * 60.00043 * 21 20 19 45 45 H 1.48502 * 109.99699 * 58.68387 * 22 20 19 46 46 H 1.48498 * 110.00216 * 180.02562 * 22 20 19 47 47 H 1.08006 * 119.93966 * 180.02562 * 23 19 18 48 48 H 1.08002 * 119.96980 * 179.97438 * 24 23 19 49 49 H 1.07998 * 120.02956 * 179.72220 * 25 24 23 50 50 H 1.09005 * 113.61368 * 139.94082 * 26 9 8 51 51 H 1.08997 * 113.61614 * 270.83927 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6924 1.1996 5 6 1.9588 -0.6926 -1.1994 6 6 1.5540 0.0974 -2.4455 7 1 1.7121 1.1704 -2.3362 8 6 2.1236 -0.4792 -3.7524 9 6 0.7624 -0.1615 -4.3936 10 1 0.7032 0.8403 -4.8188 11 7 0.2910 -1.1991 -5.3141 12 6 -0.5939 -0.8894 -6.2825 13 8 -0.9995 0.2483 -6.3920 14 6 -1.0784 -1.9565 -7.2298 15 6 -2.0677 -1.3450 -8.2240 16 8 -2.5267 -2.3569 -9.1226 17 6 -3.4174 -1.9772 -10.0763 18 6 -3.9049 -2.9082 -10.9815 19 6 -4.8100 -2.5195 -11.9505 20 6 -5.3397 -3.5303 -12.9347 21 8 -6.1136 -4.5108 -12.2405 22 14 -6.4114 -2.6699 -14.1925 23 6 -5.2300 -1.2042 -12.0178 24 6 -4.7462 -0.2743 -11.1158 25 6 -3.8373 -0.6567 -10.1487 26 6 0.1588 -0.2687 -2.9833 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.0486 -0.6929 1.1994 31 1 1.5953 -0.1785 2.0895 32 1 1.5953 -1.7201 1.1995 33 1 1.5240 -1.6911 -1.2452 34 1 3.0450 -0.7709 -1.1556 35 1 2.3433 -1.5455 -3.6999 36 1 2.9473 0.1030 -4.1655 37 1 0.6156 -2.1090 -5.2269 38 1 -1.5724 -2.7469 -6.6648 39 1 -0.2298 -2.3735 -7.7722 40 1 -1.5733 -0.5548 -8.7890 41 1 -2.9164 -0.9278 -7.6820 42 1 -3.5776 -3.9360 -10.9289 43 1 -4.5056 -4.0171 -13.4401 44 1 -6.8745 -4.1480 -11.7667 45 1 -5.6265 -1.6260 -14.8992 46 1 -6.9405 -3.6561 -15.1686 47 1 -5.9379 -0.9025 -12.7757 48 1 -5.0757 0.7528 -11.1707 49 1 -3.4563 0.0708 -9.4472 50 1 -0.6017 0.4841 -2.7754 51 1 -0.1597 -1.2774 -2.7202 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:27:08 Heat of formation + Delta-G solvation = 48.507784 kcal Electronic energy + Delta-G solvation = -28141.387622 eV Core-core repulsion = 24126.921948 eV Total energy + Delta-G solvation = -4014.465675 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24435 -41.43480 -40.88583 -39.35050 -38.93367 -37.29883 -34.77209 -33.28358 -32.50827 -30.95184 -30.04251 -29.50030 -27.13480 -26.72189 -26.18308 -25.26191 -23.73690 -23.49031 -22.09175 -21.55730 -20.88395 -19.39243 -19.09180 -18.17512 -18.09003 -17.71428 -17.53702 -17.40777 -17.15236 -16.96643 -16.65611 -16.26174 -16.10033 -15.90573 -15.45079 -14.97871 -14.79143 -14.66635 -14.46733 -14.23740 -14.01067 -13.92372 -13.58575 -13.52618 -13.41569 -13.32353 -13.26786 -13.08596 -12.98620 -12.89014 -12.79963 -12.43247 -12.31533 -12.09547 -11.86411 -11.80324 -11.67654 -11.50635 -11.07643 -10.52442 -10.11418 -9.99130 -9.32070 -5.02361 0.15135 0.34412 1.03017 1.26313 1.44292 1.61822 1.68892 1.95265 2.45742 2.61961 2.89535 2.96545 3.20520 3.33883 3.46307 3.47053 3.52701 3.62524 3.70569 3.75001 3.80478 3.84007 3.92656 3.99264 4.05158 4.15002 4.19799 4.20976 4.22440 4.32213 4.34344 4.40098 4.45673 4.47212 4.57910 4.61611 4.67452 4.69799 4.71871 4.74867 4.76816 4.83867 4.88168 4.93008 4.93930 5.04983 5.17728 5.20592 5.33401 5.40152 5.50919 5.65238 6.27931 6.40307 6.72681 7.11120 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033519 B = 0.001558 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.156802 B =17963.524483 C =18075.519691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.370 5.370 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.012 3.988 6 C -0.117 4.117 7 H 0.125 0.875 8 C -0.128 4.128 9 C 0.094 3.906 10 H 0.084 0.916 11 N -0.706 5.706 12 C 0.522 3.478 13 O -0.584 6.584 14 C -0.137 4.137 15 C 0.071 3.929 16 O -0.325 6.325 17 C 0.118 3.882 18 C -0.142 4.142 19 C -0.085 4.085 20 C -0.075 4.075 21 O -0.554 6.554 22 Si 0.779 3.221 23 C -0.156 4.156 24 C -0.076 4.076 25 C -0.209 4.209 26 C -0.152 4.152 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.396 0.604 45 H -0.286 1.286 46 H -0.301 1.301 47 H 0.147 0.853 48 H 0.153 0.847 49 H 0.140 0.860 50 H 0.077 0.923 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.350 5.474 39.359 43.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 N 0.053 4.947 3 H 0.275 0.725 4 C -0.188 4.188 5 C -0.110 4.110 6 C -0.136 4.136 7 H 0.143 0.857 8 C -0.167 4.167 9 C -0.011 4.011 10 H 0.102 0.898 11 N -0.358 5.358 12 C 0.309 3.691 13 O -0.464 6.464 14 C -0.177 4.177 15 C -0.005 4.005 16 O -0.239 6.239 17 C 0.073 3.927 18 C -0.161 4.161 19 C -0.086 4.086 20 C -0.184 4.184 21 O -0.362 6.362 22 Si 0.686 3.314 23 C -0.174 4.174 24 C -0.094 4.094 25 C -0.227 4.227 26 C -0.190 4.190 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.258 0.742 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.246 0.754 45 H -0.213 1.213 46 H -0.230 1.230 47 H 0.165 0.835 48 H 0.171 0.829 49 H 0.158 0.842 50 H 0.095 0.905 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.406 5.618 38.272 42.417 hybrid contribution 0.726 -0.047 -0.389 0.825 sum 18.132 5.571 37.883 42.366 Atomic orbital electron populations 1.24272 0.76748 1.09597 1.09324 1.44843 1.15563 1.19562 1.14706 0.72492 1.24131 1.05810 1.02332 0.86528 1.23892 1.06086 0.99302 0.81713 1.22723 0.95936 1.01998 0.92924 0.85708 1.23322 0.95454 1.03786 0.94100 1.22708 0.96805 0.92402 0.89154 0.89754 1.45833 1.44287 1.14029 1.31634 1.20503 0.78733 0.88617 0.81266 1.90756 1.58705 1.23620 1.73324 1.21475 1.01018 0.98526 0.96637 1.22487 0.97894 0.89582 0.90492 1.85955 1.57368 1.38645 1.41955 1.19080 0.90662 0.93327 0.89660 1.20320 1.00261 0.99437 0.96050 1.20220 0.96720 0.95094 0.96519 1.25212 0.99919 0.93458 0.99851 1.86477 1.44601 1.34791 1.70375 0.93658 0.83845 0.77077 0.76856 1.21180 1.02515 0.92501 1.01199 1.21265 0.94527 1.00783 0.92791 1.21536 1.02914 0.95057 1.03227 1.23880 0.96891 1.04121 0.94125 0.85574 0.86694 0.85967 0.85453 0.85794 0.86227 0.84237 0.83320 0.86804 0.90451 0.74232 0.85428 0.86103 0.92138 0.91491 0.85546 0.87626 0.75403 1.21328 1.22977 0.83545 0.82901 0.84250 0.90459 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.55 8.57 127.69 1.09 4.64 16 2 N -0.37 24.62 0.66 -948.81 -0.62 23.99 16 3 H 0.44 -30.57 8.41 -89.69 -0.75 -31.33 16 4 C -0.05 2.99 9.19 127.69 1.17 4.16 16 5 C 0.01 -0.76 4.57 86.30 0.39 -0.36 16 6 C -0.12 6.27 3.31 -10.21 -0.03 6.23 16 7 H 0.12 -6.85 8.10 -2.38 -0.02 -6.87 16 8 C -0.13 5.75 7.39 31.12 0.23 5.98 16 9 C 0.09 -3.40 4.21 45.52 0.19 -3.21 16 10 H 0.08 -2.38 7.50 -2.39 -0.02 -2.40 16 11 N -0.71 22.75 5.36 -440.04 -2.36 20.39 16 12 C 0.52 -11.73 7.83 87.66 0.69 -11.04 16 13 O -0.58 7.40 15.60 -3.04 -0.05 7.35 16 14 C -0.14 3.21 6.07 29.85 0.18 3.39 16 15 C 0.07 -1.10 4.03 71.98 0.29 -0.81 16 16 O -0.32 3.37 10.14 -92.39 -0.94 2.44 16 17 C 0.12 -0.96 6.69 22.51 0.15 -0.81 16 18 C -0.14 1.02 9.62 22.37 0.22 1.23 16 19 C -0.09 0.78 5.35 -19.88 -0.11 0.67 16 20 C -0.07 0.71 2.80 71.23 0.20 0.91 16 21 O -0.55 4.90 12.83 -148.98 -1.91 2.99 16 22 Si 0.78 -8.60 29.80 68.60 2.04 -6.56 16 23 C -0.16 1.81 8.67 22.28 0.19 2.00 16 24 C -0.08 0.92 10.04 22.25 0.22 1.14 16 25 C -0.21 2.19 9.04 22.37 0.20 2.39 16 26 C -0.15 6.99 5.70 31.18 0.18 7.16 16 27 H 0.13 -7.82 8.14 -2.39 -0.02 -7.84 16 28 H 0.11 -6.81 5.13 -2.38 -0.01 -6.82 16 29 H 0.12 -7.55 8.11 -2.39 -0.02 -7.56 16 30 H 0.13 -8.23 8.11 -2.39 -0.02 -8.25 16 31 H 0.12 -7.89 8.14 -2.39 -0.02 -7.91 16 32 H 0.12 -7.60 8.14 -2.39 -0.02 -7.62 16 33 H 0.14 -8.86 7.80 -2.39 -0.02 -8.88 16 34 H 0.15 -9.58 8.09 -2.39 -0.02 -9.60 16 35 H 0.11 -5.43 8.07 -2.39 -0.02 -5.45 16 36 H 0.08 -3.17 8.14 -2.39 -0.02 -3.18 16 37 H 0.42 -16.07 8.71 -92.71 -0.81 -16.88 16 38 H 0.13 -3.50 8.14 -2.39 -0.02 -3.52 16 39 H 0.12 -3.11 8.14 -2.38 -0.02 -3.13 16 40 H 0.06 -0.81 7.61 -2.38 -0.02 -0.83 16 41 H 0.07 -0.99 7.63 -2.39 -0.02 -1.01 16 42 H 0.13 -0.85 8.06 -2.91 -0.02 -0.87 16 43 H 0.11 -0.86 7.96 -2.39 -0.02 -0.87 16 44 H 0.40 -6.79 8.70 -74.06 -0.64 -7.43 16 45 H -0.29 1.77 7.11 99.48 0.71 2.48 16 46 H -0.30 0.89 7.11 99.48 0.71 1.59 16 47 H 0.15 -2.32 4.90 -2.91 -0.01 -2.33 16 48 H 0.15 -2.60 8.06 -2.91 -0.02 -2.62 16 49 H 0.14 -1.82 6.30 -2.91 -0.02 -1.84 16 50 H 0.08 -3.35 7.19 -2.38 -0.02 -3.36 16 51 H 0.11 -5.41 7.90 -2.39 -0.02 -5.43 16 Total: 1.00 -85.87 402.87 0.40 -85.46 By element: Atomic # 1 Polarization: -158.53 SS G_CDS: -1.22 Total: -159.76 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 5.46 Total: 23.69 kcal Atomic # 7 Polarization: 47.37 SS G_CDS: -2.98 Total: 44.39 kcal Atomic # 8 Polarization: 15.67 SS G_CDS: -2.90 Total: 12.78 kcal Atomic # 14 Polarization: -8.60 SS G_CDS: 2.04 Total: -6.56 kcal Total: -85.87 0.40 -85.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.970 kcal (2) G-P(sol) polarization free energy of solvation -85.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds