Wall clock time and date at job start Sun Mar 7 2021 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 116.99977 * 2 1 4 4 C 1.39151 * 120.07425 * 180.02562 * 3 2 1 5 5 O 1.35990 * 120.07342 * 359.95600 * 4 3 2 6 6 C 1.42906 * 117.00367 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47278 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00550 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00150 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00250 * 180.02562 * 9 7 6 11 11 H 1.09007 * 112.84990 * 23.80174 * 10 9 7 12 12 C 1.53776 * 113.61748 * 155.00220 * 10 9 7 13 13 C 1.53780 * 87.08311 * 139.97667 * 12 10 9 14 14 H 1.09009 * 113.61388 * 89.20235 * 13 12 10 15 15 C 1.52999 * 113.61590 * 220.01839 * 13 12 10 16 16 N 1.46901 * 109.47332 * 185.00236 * 15 13 12 17 17 H 1.00901 * 109.46671 * 54.99700 * 16 15 13 18 18 C 1.46894 * 109.47438 * 174.99872 * 16 15 13 19 19 C 1.46903 * 109.47179 * 295.00265 * 16 15 13 20 20 C 1.53775 * 87.08063 * 334.56852 * 13 12 10 21 21 C 1.38567 * 119.85426 * 179.97438 * 4 3 2 22 22 C 1.38233 * 120.00014 * 359.97438 * 21 4 3 23 23 C 1.38251 * 120.14958 * 359.97438 * 22 21 4 24 24 C 1.50699 * 119.93080 * 180.02562 * 23 22 21 25 25 O 1.42909 * 109.46969 * 245.01851 * 24 23 22 26 26 Si 1.86295 * 109.46934 * 5.01474 * 24 23 22 27 27 C 1.38245 * 120.14567 * 0.02562 * 23 22 21 28 28 H 1.08996 * 109.46870 * 60.00021 * 1 2 3 29 29 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46803 * 299.99937 * 1 2 3 31 31 H 1.08994 * 109.46812 * 300.00600 * 6 5 4 32 32 H 1.09002 * 109.46587 * 59.99788 * 6 5 4 33 33 H 0.96996 * 119.99584 * 0.02562 * 9 7 6 34 34 H 1.08996 * 113.61674 * 254.52730 * 12 10 9 35 35 H 1.09001 * 113.61412 * 25.34555 * 12 10 9 36 36 H 1.09004 * 109.46987 * 305.00016 * 15 13 12 37 37 H 1.08998 * 109.46950 * 65.00524 * 15 13 12 38 38 H 1.09009 * 109.46990 * 60.00130 * 18 16 15 39 39 H 1.09000 * 109.47145 * 180.02562 * 18 16 15 40 40 H 1.09003 * 109.47266 * 300.00296 * 18 16 15 41 41 H 1.09004 * 109.46601 * 300.00027 * 19 16 15 42 42 H 1.08999 * 109.47075 * 59.99642 * 19 16 15 43 43 H 1.09000 * 109.47243 * 179.97438 * 19 16 15 44 44 H 1.09001 * 113.61531 * 270.87542 * 20 13 12 45 45 H 1.09003 * 113.61453 * 139.97875 * 20 13 12 46 46 H 1.07999 * 119.99853 * 179.97438 * 21 4 3 47 47 H 1.08007 * 119.92692 * 180.02562 * 22 21 4 48 48 H 1.08996 * 109.47401 * 125.01689 * 24 23 22 49 49 H 0.96704 * 113.99889 * 60.00138 * 25 24 23 50 50 H 1.48505 * 109.99763 * 180.02562 * 26 24 23 51 51 H 1.48494 * 110.00551 * 301.32422 * 26 24 23 52 52 H 1.07995 * 120.00147 * 179.73072 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0002 6 6 5.6004 0.3007 -0.0002 7 6 6.2519 -1.0581 0.0009 8 8 5.5671 -2.0591 0.0011 9 7 7.5958 -1.1611 0.0005 10 6 8.2292 -2.4821 0.0010 11 1 7.5833 -3.2614 -0.4038 12 6 9.6468 -2.4858 -0.5948 13 6 10.0322 -3.4609 0.5301 14 1 9.8812 -4.5087 0.2705 15 6 11.4139 -3.1904 1.1291 16 7 11.7385 -4.2394 2.1049 17 1 11.6609 -5.1440 1.6645 18 6 13.1112 -4.0478 2.5914 19 6 10.8032 -4.1632 3.2351 20 6 8.8780 -2.8536 1.3448 21 6 4.0603 2.5234 -0.0011 22 6 3.3029 3.6798 -0.0016 23 6 1.9224 3.6057 -0.0021 24 6 1.1016 4.8696 -0.0033 25 8 0.3645 4.9599 1.2176 26 14 2.2309 6.3432 -0.1573 27 6 1.2932 2.3748 -0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.9066 0.8502 -0.8903 32 1 5.9065 0.8508 0.8897 33 1 8.1435 -0.3606 0.0000 34 1 9.7007 -2.9250 -1.5909 35 1 10.1503 -1.5212 -0.5298 36 1 12.1604 -3.1895 0.3347 37 1 11.4109 -2.2203 1.6260 38 1 13.1951 -3.0706 3.0671 39 1 13.3522 -4.8265 3.3151 40 1 13.8052 -4.1044 1.7527 41 1 10.8871 -3.1860 3.7107 42 1 9.7847 -4.3054 2.8741 43 1 11.0438 -4.9418 3.9590 44 1 9.1718 -1.9900 1.9415 45 1 8.3111 -3.5899 1.9147 46 1 5.1386 2.5840 -0.0011 47 1 3.7908 4.6434 -0.0024 48 1 0.4096 4.8526 -0.8452 49 1 0.9177 4.9797 2.0106 50 1 1.4336 7.5961 -0.1590 51 1 3.2002 6.3602 0.9675 52 1 0.2147 2.3197 0.0024 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:28:13 Heat of formation + Delta-G solvation = 24.831584 kcal Electronic energy + Delta-G solvation = -31046.453990 eV Core-core repulsion = 26712.279447 eV Total energy + Delta-G solvation = -4334.174544 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24639 -41.82732 -40.93353 -39.63183 -39.04672 -38.74122 -37.05768 -34.80424 -32.11109 -31.51233 -30.52919 -29.52562 -29.18828 -28.47917 -26.69785 -26.29795 -25.72623 -24.09949 -23.28738 -22.55066 -21.72171 -20.96991 -19.85122 -19.07798 -18.67082 -18.36605 -18.03574 -17.94598 -17.54514 -17.44133 -17.15028 -16.72246 -16.67741 -16.17311 -16.02851 -15.88151 -15.83092 -15.51451 -15.37471 -14.74711 -14.50471 -14.36171 -13.93179 -13.81533 -13.61615 -13.57477 -13.52170 -13.47479 -13.40085 -13.28310 -13.07355 -12.84690 -12.67647 -12.63006 -12.32155 -12.20891 -12.17372 -12.03408 -11.78468 -11.65565 -11.49904 -11.00020 -10.64628 -10.13321 -9.82394 -8.95923 -4.91986 0.13102 0.24497 1.04295 1.30085 1.40212 1.49708 1.58514 1.98777 2.26352 2.51900 2.55106 2.90729 2.97999 3.21755 3.35010 3.38030 3.47100 3.54204 3.62665 3.72065 3.77774 3.82866 3.89017 3.98454 4.01676 4.09437 4.11258 4.16784 4.21992 4.25438 4.26210 4.32157 4.34346 4.41194 4.48500 4.53288 4.60720 4.62634 4.68485 4.71680 4.75955 4.77568 4.85347 4.89400 4.94682 4.97465 5.07259 5.08568 5.16377 5.34988 5.49629 5.55800 5.92864 6.37694 6.46649 6.50630 7.12755 Molecular weight = 352.20amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.001837 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.526893 B =15234.900619 C =16184.987375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.076 3.924 4 C 0.088 3.912 5 O -0.315 6.315 6 C 0.027 3.973 7 C 0.513 3.487 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.094 3.906 11 H 0.080 0.920 12 C -0.124 4.124 13 C -0.118 4.118 14 H 0.123 0.877 15 C 0.013 3.987 16 N -0.371 5.371 17 H 0.438 0.562 18 C -0.046 4.046 19 C -0.057 4.057 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.088 4.088 25 O -0.552 6.552 26 Si 0.779 3.221 27 C -0.155 4.155 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.423 0.577 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.180 0.820 47 H 0.158 0.842 48 H 0.118 0.882 49 H 0.386 0.614 50 H -0.313 1.313 51 H -0.268 1.268 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.259 -16.137 6.682 42.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.030 3.970 4 C 0.042 3.958 5 O -0.229 6.229 6 C -0.051 4.051 7 C 0.299 3.701 8 O -0.453 6.453 9 N -0.353 5.353 10 C -0.011 4.011 11 H 0.098 0.902 12 C -0.163 4.163 13 C -0.137 4.137 14 H 0.141 0.859 15 C -0.109 4.109 16 N 0.053 4.947 17 H 0.275 0.725 18 C -0.188 4.188 19 C -0.200 4.200 20 C -0.191 4.191 21 C -0.175 4.175 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.196 4.196 25 O -0.360 6.360 26 Si 0.683 3.317 27 C -0.173 4.173 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.198 0.802 47 H 0.175 0.825 48 H 0.136 0.864 49 H 0.236 0.764 50 H -0.242 1.242 51 H -0.194 1.194 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 37.598 -16.294 6.761 41.531 hybrid contribution -1.326 -0.224 0.857 1.594 sum 36.273 -16.518 7.618 40.578 Atomic orbital electron populations 1.23269 0.76915 1.05197 1.01994 1.86170 1.22832 1.26624 1.89106 1.18680 0.90140 0.85446 1.02707 1.18511 0.87961 0.86609 1.02670 1.86223 1.18510 1.28840 1.89305 1.22880 0.79279 0.95965 1.06929 1.20520 0.83759 0.90340 0.75511 1.90794 1.64411 1.40145 1.49979 1.45637 1.04465 1.10597 1.74569 1.22717 0.93941 0.84826 0.99584 0.90206 1.23331 0.92574 1.01520 0.98884 1.22688 0.92370 1.01825 0.96781 0.85921 1.23907 0.98937 0.93424 0.94668 1.44849 1.15448 1.18747 1.15692 0.72542 1.24129 0.79516 1.09067 1.06056 1.24268 0.96014 1.09705 0.89972 1.23874 0.96661 1.02275 0.96271 1.21367 1.02278 0.89072 1.04737 1.21060 0.92283 0.99363 1.00205 1.20098 0.94607 0.94503 1.02403 1.25336 1.02249 1.02560 0.89461 1.86591 1.37431 1.95607 1.16351 0.94031 0.77461 0.72190 0.87986 1.21028 1.00470 0.90785 1.05061 0.91796 0.87013 0.92087 0.85676 0.85522 0.73810 0.90448 0.86245 0.83180 0.83983 0.86123 0.85917 0.85410 0.85824 0.86837 0.85676 0.86629 0.90819 0.80241 0.82489 0.86385 0.76444 1.24200 1.19442 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.20 9.81 113.37 1.11 0.91 16 2 O -0.33 0.82 10.28 -79.60 -0.82 0.00 16 3 C 0.08 -0.43 6.70 22.57 0.15 -0.28 16 4 C 0.09 -0.88 6.70 22.57 0.15 -0.73 16 5 O -0.32 2.79 9.45 -67.03 -0.63 2.15 16 6 C 0.03 -0.61 5.22 71.23 0.37 -0.23 16 7 C 0.51 -10.06 7.91 87.65 0.69 -9.36 16 8 O -0.58 3.51 16.10 15.98 0.26 3.77 16 9 N -0.70 22.45 5.35 -440.04 -2.36 20.09 16 10 C 0.09 -3.33 4.24 45.52 0.19 -3.14 16 11 H 0.08 -2.09 7.46 -2.38 -0.02 -2.11 16 12 C -0.12 5.64 7.39 31.12 0.23 5.87 16 13 C -0.12 6.30 3.31 -10.27 -0.03 6.27 16 14 H 0.12 -6.66 8.10 -2.38 -0.02 -6.68 16 15 C 0.01 -0.79 4.57 86.30 0.39 -0.40 16 16 N -0.37 24.67 0.66 -948.83 -0.62 24.04 16 17 H 0.44 -30.45 8.40 -89.69 -0.75 -31.20 16 18 C -0.05 2.98 9.19 127.69 1.17 4.15 16 19 C -0.06 3.54 8.57 127.69 1.09 4.64 16 20 C -0.15 6.96 5.69 31.12 0.18 7.13 16 21 C -0.16 2.81 9.04 22.35 0.20 3.01 16 22 C -0.11 1.88 8.66 22.27 0.19 2.08 16 23 C -0.12 1.42 5.35 -19.86 -0.11 1.31 16 24 C -0.09 1.08 2.80 71.24 0.20 1.28 16 25 O -0.55 4.64 12.83 -148.98 -1.91 2.73 16 26 Si 0.78 -11.73 29.88 68.60 2.05 -9.68 16 27 C -0.15 1.32 8.67 22.35 0.19 1.52 16 28 H 0.06 -0.73 7.66 -2.39 -0.02 -0.75 16 29 H 0.11 -1.37 8.14 -2.38 -0.02 -1.39 16 30 H 0.06 -0.67 7.66 -2.38 -0.02 -0.69 16 31 H 0.13 -3.61 7.66 -2.39 -0.02 -3.63 16 32 H 0.13 -3.77 7.66 -2.39 -0.02 -3.79 16 33 H 0.42 -17.06 8.73 -92.71 -0.81 -17.87 16 34 H 0.08 -3.18 8.14 -2.39 -0.02 -3.20 16 35 H 0.12 -5.87 8.08 -2.39 -0.02 -5.89 16 36 H 0.15 -9.77 8.09 -2.38 -0.02 -9.79 16 37 H 0.14 -9.15 7.79 -2.39 -0.02 -9.17 16 38 H 0.12 -7.71 8.14 -2.38 -0.02 -7.73 16 39 H 0.12 -7.80 8.14 -2.39 -0.02 -7.82 16 40 H 0.13 -8.29 8.11 -2.39 -0.02 -8.31 16 41 H 0.12 -7.65 8.11 -2.38 -0.02 -7.66 16 42 H 0.11 -6.65 5.13 -2.39 -0.01 -6.66 16 43 H 0.12 -7.71 8.14 -2.39 -0.02 -7.73 16 44 H 0.12 -5.68 7.90 -2.39 -0.02 -5.70 16 45 H 0.07 -3.10 7.18 -2.39 -0.02 -3.12 16 46 H 0.18 -4.97 6.30 -2.91 -0.02 -4.98 16 47 H 0.16 -3.46 4.83 -2.91 -0.01 -3.48 16 48 H 0.12 -1.50 7.96 -2.39 -0.02 -1.52 16 49 H 0.39 -5.61 8.70 -74.05 -0.64 -6.26 16 50 H -0.31 1.67 7.11 99.48 0.71 2.38 16 51 H -0.27 3.67 7.00 99.48 0.70 4.37 16 52 H 0.14 -1.22 6.30 -2.91 -0.02 -1.24 16 Total: 1.00 -95.62 411.02 1.13 -94.49 By element: Atomic # 1 Polarization: -160.41 SS G_CDS: -1.22 Total: -161.63 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 6.39 Total: 24.03 kcal Atomic # 7 Polarization: 47.11 SS G_CDS: -2.98 Total: 44.13 kcal Atomic # 8 Polarization: 11.76 SS G_CDS: -3.11 Total: 8.65 kcal Atomic # 14 Polarization: -11.73 SS G_CDS: 2.05 Total: -9.68 kcal Total: -95.62 1.13 -94.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.326 kcal (2) G-P(sol) polarization free energy of solvation -95.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds