Wall clock time and date at job start Sun Mar 7 2021 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33813 * 122.44514 * 2 1 4 4 C 1.50707 * 124.52432 * 0.05673 * 3 2 1 5 5 O 1.42904 * 109.46760 * 329.99272 * 4 3 2 6 6 Si 1.86303 * 109.46924 * 209.99452 * 4 3 2 7 7 S 1.70618 * 110.95523 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56136 * 0.02562 * 7 3 2 9 9 C 1.46586 * 125.45704 * 179.97438 * 8 7 3 10 10 O 1.21704 * 119.99901 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99956 * 0.03125 * 9 8 7 12 12 C 1.46496 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.08996 * 112.85193 * 336.18806 * 12 11 9 14 14 C 1.53778 * 113.61747 * 107.49997 * 12 11 9 15 15 C 1.53779 * 87.08440 * 139.97825 * 14 12 11 16 16 H 1.08997 * 113.69115 * 89.12922 * 15 14 12 17 17 C 1.53004 * 113.61525 * 220.02287 * 15 14 12 18 18 N 1.46899 * 109.46945 * 272.49647 * 17 15 14 19 19 H 1.00902 * 109.47255 * 305.00178 * 18 17 15 20 20 C 1.46898 * 109.47231 * 64.99744 * 18 17 15 21 21 C 1.46898 * 109.47284 * 184.99927 * 18 17 15 22 22 C 1.53782 * 87.08034 * 334.56570 * 15 14 12 23 23 C 1.36649 * 109.08368 * 0.26681 * 8 7 3 24 24 H 1.09002 * 109.47253 * 89.99608 * 1 2 3 25 25 H 1.09006 * 109.46596 * 209.99422 * 1 2 3 26 26 H 1.08993 * 109.47145 * 329.99053 * 1 2 3 27 27 H 1.08999 * 109.47281 * 89.99634 * 4 3 2 28 28 H 0.96697 * 113.99923 * 180.02562 * 5 4 3 29 29 H 1.48501 * 109.99854 * 59.99917 * 6 4 3 30 30 H 1.48499 * 110.00033 * 181.31340 * 6 4 3 31 31 H 0.96996 * 119.99871 * 359.97438 * 11 9 8 32 32 H 1.09001 * 113.61962 * 254.52804 * 14 12 11 33 33 H 1.09001 * 113.61446 * 25.43093 * 14 12 11 34 34 H 1.08997 * 109.47076 * 32.49226 * 17 15 14 35 35 H 1.08997 * 109.47474 * 152.49680 * 17 15 14 36 36 H 1.08997 * 109.46808 * 60.00315 * 20 18 17 37 37 H 1.09000 * 109.47198 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47492 * 300.00018 * 20 18 17 39 39 H 1.09005 * 109.46979 * 60.00066 * 21 18 17 40 40 H 1.09000 * 109.47180 * 179.97438 * 21 18 17 41 41 H 1.08997 * 109.47305 * 300.00022 * 21 18 17 42 42 H 1.09000 * 113.62092 * 270.88492 * 22 15 14 43 43 H 1.09004 * 113.69179 * 139.99005 * 22 15 14 44 44 H 1.08001 * 123.35317 * 179.71560 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6353 2.5162 0.0012 5 8 0.3747 2.4984 -0.6715 6 14 2.7917 3.6833 -0.8772 7 16 3.8969 0.7894 -0.0007 8 6 3.5937 -0.9426 -0.0018 9 6 4.6233 -1.9861 -0.0033 10 8 4.3003 -3.1595 -0.0045 11 7 5.9274 -1.6460 -0.0034 12 6 6.9562 -2.6889 -0.0055 13 1 6.5995 -3.6362 0.3987 14 6 7.6899 -2.8278 -1.3498 15 6 8.9794 -3.0270 -0.5360 16 1 9.1778 -4.0672 -0.2774 17 6 10.1975 -2.3210 -1.1350 18 7 10.8453 -3.2063 -2.1120 19 1 11.0666 -4.0873 -1.6726 20 6 9.9355 -3.4376 -3.2419 21 6 12.0806 -2.5779 -2.5987 22 6 8.2983 -2.2314 0.5900 23 6 2.2447 -1.1600 -0.0076 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8898 0.5139 27 1 1.4940 2.8500 1.0292 28 1 -0.0632 3.3597 -0.7093 29 1 2.9927 3.2391 -2.2799 30 1 2.2367 5.0605 -0.8553 31 1 6.1847 -0.7108 -0.0028 32 1 7.3933 -3.7079 -1.9203 33 1 7.6863 -1.9150 -1.9456 34 1 9.8786 -1.4043 -1.6309 35 1 10.9035 -2.0779 -0.3410 36 1 9.6964 -2.4860 -3.7165 37 1 10.4160 -4.0949 -3.9666 38 1 9.0188 -3.9040 -2.8808 39 1 12.7557 -2.4063 -1.7602 40 1 12.5615 -3.2350 -3.3233 41 1 11.8416 -1.6263 -3.0733 42 1 8.4609 -1.1556 0.5246 43 1 8.4920 -2.6289 1.5863 44 1 1.8020 -2.1451 -0.0138 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:28:37 Heat of formation + Delta-G solvation = 94.770563 kcal Electronic energy + Delta-G solvation = -23704.846470 eV Core-core repulsion = 20255.758957 eV Total energy + Delta-G solvation = -3449.087512 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22322 -41.02688 -39.89650 -38.96833 -37.53352 -34.82669 -32.34510 -30.29627 -30.11373 -29.47993 -26.99332 -26.65668 -25.59459 -24.54790 -23.31951 -21.85665 -21.08594 -19.98686 -19.28160 -19.01202 -18.52516 -18.03088 -17.47162 -17.18981 -16.85536 -16.38094 -16.18880 -15.95826 -15.76156 -15.02193 -14.74249 -14.57214 -14.44016 -14.20101 -13.92341 -13.56204 -13.51253 -13.40063 -13.30944 -13.24489 -13.20365 -13.06063 -13.00222 -12.83088 -12.63754 -12.34066 -12.18454 -12.05216 -11.77452 -11.49092 -11.28341 -10.86250 -10.20870 -9.63770 -9.37662 -5.19728 -0.70686 0.25361 0.61687 1.01414 1.06222 1.28982 1.51165 1.86674 1.98869 2.02780 2.91688 2.99353 3.18439 3.23610 3.36018 3.48649 3.58996 3.67850 3.74384 3.82265 4.00133 4.07785 4.18481 4.23483 4.28716 4.35504 4.36269 4.42528 4.49807 4.52237 4.68910 4.72580 4.75132 4.78883 4.79048 4.83869 4.87150 4.90830 4.93391 4.96382 5.08816 5.14585 5.35736 5.37544 5.49220 6.31152 6.48379 7.00417 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003159 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.932321 B = 8860.853416 C = 9707.137523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.114 4.114 3 C -0.209 4.209 4 C -0.049 4.049 5 O -0.544 6.544 6 Si 0.746 3.254 7 S 0.291 5.709 8 C -0.289 4.289 9 C 0.593 3.407 10 O -0.573 6.573 11 N -0.702 5.702 12 C 0.092 3.908 13 H 0.088 0.912 14 C -0.154 4.154 15 C -0.115 4.115 16 H 0.127 0.873 17 C 0.012 3.988 18 N -0.370 5.370 19 H 0.438 0.562 20 C -0.058 4.058 21 C -0.046 4.046 22 C -0.127 4.127 23 C -0.067 4.067 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.398 0.602 29 H -0.286 1.286 30 H -0.268 1.268 31 H 0.414 0.586 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.727 -4.711 -5.549 32.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C -0.328 4.328 4 C -0.159 4.159 5 O -0.355 6.355 6 Si 0.647 3.353 7 S 0.559 5.441 8 C -0.409 4.409 9 C 0.380 3.620 10 O -0.454 6.454 11 N -0.353 5.353 12 C -0.012 4.012 13 H 0.107 0.893 14 C -0.193 4.193 15 C -0.135 4.135 16 H 0.145 0.855 17 C -0.110 4.110 18 N 0.054 4.946 19 H 0.275 0.725 20 C -0.200 4.200 21 C -0.188 4.188 22 C -0.165 4.165 23 C -0.101 4.101 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.249 0.751 29 H -0.212 1.212 30 H -0.194 1.194 31 H 0.251 0.749 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 33.057 -4.444 -6.384 33.960 hybrid contribution -3.421 -0.678 0.010 3.487 sum 29.636 -5.121 -6.375 30.744 Atomic orbital electron populations 1.20470 0.89113 1.02594 1.02187 1.18758 0.98720 0.91107 1.03993 1.23720 1.00158 0.98944 1.10026 1.24409 0.91629 0.96911 1.02977 1.86652 1.32190 1.37243 1.79385 0.94972 0.83970 0.76061 0.80282 1.81890 0.99742 0.95070 1.67371 1.24742 0.97593 0.99053 1.19526 1.17097 0.83056 0.86568 0.75313 1.90845 1.82515 1.20124 1.51947 1.45718 1.03993 1.11190 1.74419 1.22834 0.86576 0.91921 0.99843 0.89341 1.23893 0.94816 1.04305 0.96253 1.22691 0.92153 1.02048 0.96563 0.85485 1.23908 0.97198 0.95226 0.94669 1.44833 1.15322 1.18821 1.15644 0.72469 1.24271 0.97014 1.08721 0.90024 1.24126 0.84977 1.03619 1.06059 1.23357 0.91328 1.02670 0.99173 1.20708 0.92067 0.99755 0.97587 0.91967 0.92196 0.90237 0.87366 0.75086 1.21227 1.19357 0.74887 0.90378 0.86975 0.84147 0.83047 0.85944 0.85639 0.86745 0.85378 0.85922 0.86185 0.86512 0.90010 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.86 8.70 71.24 0.62 1.48 16 2 C -0.11 1.21 5.75 -21.05 -0.12 1.09 16 3 C -0.21 3.12 5.57 24.68 0.14 3.26 16 4 C -0.05 0.88 2.75 71.24 0.20 1.07 16 5 O -0.54 8.02 9.81 -148.98 -1.46 6.56 16 6 Si 0.75 -14.66 31.31 68.60 2.15 -12.51 16 7 S 0.29 -6.36 19.80 -56.49 -1.12 -7.48 16 8 C -0.29 4.35 6.45 24.08 0.16 4.51 16 9 C 0.59 -9.40 7.78 86.42 0.67 -8.72 16 10 O -0.57 3.69 16.44 -4.36 -0.07 3.62 16 11 N -0.70 19.57 5.35 -444.09 -2.38 17.20 16 12 C 0.09 -3.15 4.24 45.52 0.19 -2.95 16 13 H 0.09 -2.34 7.46 -2.39 -0.02 -2.35 16 14 C -0.15 6.87 5.69 31.12 0.18 7.05 16 15 C -0.12 6.14 3.31 -10.27 -0.03 6.10 16 16 H 0.13 -6.93 8.09 -2.39 -0.02 -6.95 16 17 C 0.01 -0.74 4.57 86.30 0.39 -0.35 16 18 N -0.37 24.49 0.66 -948.86 -0.62 23.86 16 19 H 0.44 -30.50 8.40 -89.69 -0.75 -31.25 16 20 C -0.06 3.56 8.57 127.69 1.09 4.66 16 21 C -0.05 2.97 9.19 127.69 1.17 4.14 16 22 C -0.13 5.61 7.39 31.12 0.23 5.84 16 23 C -0.07 0.68 9.80 21.72 0.21 0.89 16 24 H 0.06 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.06 -0.62 8.13 -2.38 -0.02 -0.64 16 26 H 0.08 -0.83 6.41 -2.39 -0.02 -0.85 16 27 H 0.11 -2.33 7.96 -2.39 -0.02 -2.35 16 28 H 0.40 -8.77 8.74 -74.06 -0.65 -9.42 16 29 H -0.29 3.56 7.11 99.48 0.71 4.27 16 30 H -0.27 3.99 7.11 99.48 0.71 4.70 16 31 H 0.41 -13.99 7.84 -92.71 -0.73 -14.72 16 32 H 0.08 -3.27 7.18 -2.39 -0.02 -3.29 16 33 H 0.11 -5.30 7.90 -2.39 -0.02 -5.31 16 34 H 0.14 -8.91 7.79 -2.39 -0.02 -8.93 16 35 H 0.15 -9.80 8.09 -2.39 -0.02 -9.82 16 36 H 0.12 -7.48 8.11 -2.39 -0.02 -7.50 16 37 H 0.13 -7.70 8.14 -2.39 -0.02 -7.72 16 38 H 0.11 -6.68 5.13 -2.39 -0.01 -6.69 16 39 H 0.13 -8.28 8.11 -2.38 -0.02 -8.30 16 40 H 0.12 -7.77 8.14 -2.39 -0.02 -7.78 16 41 H 0.12 -7.61 8.14 -2.39 -0.02 -7.63 16 42 H 0.12 -5.55 8.08 -2.39 -0.02 -5.56 16 43 H 0.08 -3.34 8.14 -2.39 -0.02 -3.36 16 44 H 0.14 -1.15 8.06 -2.91 -0.02 -1.18 16 Total: 1.00 -84.43 359.54 0.53 -83.90 By element: Atomic # 1 Polarization: -142.14 SS G_CDS: -1.07 Total: -143.21 kcal Atomic # 6 Polarization: 22.96 SS G_CDS: 5.10 Total: 28.06 kcal Atomic # 7 Polarization: 44.06 SS G_CDS: -3.00 Total: 41.06 kcal Atomic # 8 Polarization: 11.71 SS G_CDS: -1.53 Total: 10.17 kcal Atomic # 14 Polarization: -14.66 SS G_CDS: 2.15 Total: -12.51 kcal Atomic # 16 Polarization: -6.36 SS G_CDS: -1.12 Total: -7.48 kcal Total: -84.43 0.53 -83.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.673 kcal (2) G-P(sol) polarization free energy of solvation -84.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds