Wall clock time and date at job start Sun Mar 7 2021 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 H 1.00895 * 109.46903 * 2 1 4 4 C 1.46896 * 109.47078 * 120.00704 * 2 1 3 5 5 C 1.46907 * 109.46659 * 240.00288 * 2 1 3 6 6 C 1.52995 * 109.46632 * 175.00157 * 5 2 1 7 7 H 1.08997 * 112.91150 * 43.74948 * 6 5 2 8 8 C 1.53791 * 113.60994 * 174.99997 * 6 5 2 9 9 C 1.53786 * 87.07966 * 139.97886 * 8 6 5 10 10 H 1.08998 * 113.60870 * 89.19954 * 9 8 6 11 11 N 1.46499 * 113.61394 * 220.01815 * 9 8 6 12 12 C 1.34777 * 119.99665 * 205.27970 * 11 9 8 13 13 O 1.21633 * 120.00238 * 359.72097 * 12 11 9 14 14 C 1.47191 * 119.99772 * 179.72411 * 12 11 9 15 15 C 1.36005 * 123.46022 * 359.70370 * 14 12 11 16 16 S 1.70452 * 110.81730 * 179.89235 * 15 14 12 17 17 C 1.75500 * 92.44156 * 0.31737 * 16 15 14 18 18 C 1.50703 * 124.70831 * 179.85661 * 17 16 15 19 19 O 1.42901 * 109.47180 * 244.95657 * 18 17 16 20 20 Si 1.86298 * 109.47344 * 4.95626 * 18 17 16 21 21 C 1.32768 * 110.58127 * 359.81850 * 17 16 15 22 22 C 1.53778 * 87.08287 * 334.56878 * 9 8 6 23 23 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46593 * 299.99852 * 1 2 3 25 25 H 1.08995 * 109.47315 * 59.99130 * 1 2 3 26 26 H 1.08997 * 109.47759 * 59.99468 * 4 2 1 27 27 H 1.09003 * 109.46822 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.46955 * 299.99223 * 4 2 1 29 29 H 1.09000 * 109.46946 * 55.00243 * 5 2 1 30 30 H 1.09005 * 109.46939 * 295.00038 * 5 2 1 31 31 H 1.08999 * 113.61698 * 25.43239 * 8 6 5 32 32 H 1.09001 * 113.60977 * 254.52695 * 8 6 5 33 33 H 0.97001 * 119.99790 * 24.99683 * 11 9 8 34 34 H 1.08008 * 124.59385 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.47150 * 124.96305 * 18 17 16 36 36 H 0.96708 * 113.99918 * 60.00126 * 19 18 17 37 37 H 1.48503 * 109.99947 * 58.68110 * 20 18 17 38 38 H 1.48500 * 110.00073 * 179.97438 * 20 18 17 39 39 H 1.07994 * 123.46287 * 179.97438 * 21 17 16 40 40 H 1.08997 * 113.61721 * 139.97826 * 22 9 8 41 41 H 1.09004 * 113.61436 * 270.88721 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6926 1.1993 5 6 1.9586 -0.6925 -1.1996 6 6 3.4834 -0.5846 -1.2640 7 1 3.9625 -0.7628 -0.3013 8 6 4.1090 -1.3821 -2.4205 9 6 5.0666 -0.1949 -2.6171 10 1 5.9791 -0.2675 -2.0253 11 7 5.3243 0.1245 -4.0234 12 6 6.4669 0.7472 -4.3745 13 8 7.2818 1.0484 -3.5232 14 6 6.7286 1.0627 -5.7882 15 6 5.8704 0.7534 -6.7969 16 16 6.4908 1.2672 -8.2990 17 6 7.9488 1.9086 -7.5623 18 6 9.0705 2.5740 -8.3174 19 8 10.2545 1.7814 -8.2076 20 14 8.5986 2.7397 -10.1120 21 6 7.9260 1.7271 -6.2473 22 6 3.9817 0.6852 -1.9743 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8898 26 1 1.5953 -1.7202 1.1993 27 1 3.0487 -0.6930 1.1991 28 1 1.5954 -0.1788 2.0894 29 1 1.5240 -0.2329 -2.0872 30 1 1.6702 -1.7428 -1.1559 31 1 3.4310 -1.5397 -3.2593 32 1 4.6077 -2.2970 -2.1004 33 1 4.6745 -0.1158 -4.7023 34 1 4.9233 0.2515 -6.6639 35 1 9.2550 3.5627 -7.8974 36 1 10.1631 0.8865 -8.5624 37 1 7.3509 3.5352 -10.2376 38 1 9.6963 3.3950 -10.8675 39 1 8.7212 2.0434 -5.5886 40 1 4.3775 1.4392 -1.2939 41 1 3.2687 1.0928 -2.6910 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:28:41 Heat of formation + Delta-G solvation = 94.696995 kcal Electronic energy + Delta-G solvation = -21590.697690 eV Core-core repulsion = 18297.144607 eV Total energy + Delta-G solvation = -3293.553084 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.19416 -41.10161 -39.41669 -38.64709 -37.14018 -34.81461 -31.85631 -30.03152 -29.39407 -27.01255 -26.86639 -26.42116 -25.35797 -23.46723 -22.05190 -21.14614 -20.32927 -19.33921 -18.92322 -18.18460 -17.91637 -17.61426 -17.28620 -16.63570 -16.43905 -16.14787 -16.03092 -15.65836 -15.18043 -14.64719 -14.54263 -14.17092 -13.85536 -13.75207 -13.68352 -13.53014 -13.49343 -13.41703 -13.25671 -13.18963 -12.94112 -12.66220 -12.37070 -12.22820 -11.96396 -11.76003 -11.51664 -11.06678 -10.63550 -10.21794 -10.02060 -9.47415 -5.19500 -0.36185 0.36181 0.67141 0.77646 1.02422 1.18201 1.54147 1.88117 2.08769 2.21121 2.92067 2.96516 3.16496 3.35647 3.39676 3.43082 3.61012 3.72672 3.75333 3.85030 3.89860 3.94390 4.16653 4.23693 4.26006 4.34610 4.36218 4.36999 4.50379 4.65729 4.66670 4.70018 4.70868 4.79920 4.86048 4.87931 4.94640 4.97849 5.04621 5.12284 5.18034 5.50852 6.42325 6.63438 7.12228 Molecular weight = 298.13amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.002786 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.401650 B =10047.897928 C =10432.601407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 H 0.435 0.565 4 C -0.055 4.055 5 C 0.012 3.988 6 C -0.119 4.119 7 H 0.125 0.875 8 C -0.125 4.125 9 C 0.094 3.906 10 H 0.083 0.917 11 N -0.700 5.700 12 C 0.576 3.424 13 O -0.587 6.587 14 C -0.187 4.187 15 C -0.183 4.183 16 S 0.246 5.754 17 C -0.252 4.252 18 C -0.037 4.037 19 O -0.554 6.554 20 Si 0.738 3.262 21 C -0.080 4.080 22 C -0.152 4.152 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.214 0.786 35 H 0.112 0.888 36 H 0.397 0.603 37 H -0.253 1.253 38 H -0.282 1.282 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.781 -9.220 18.537 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.051 4.949 3 H 0.272 0.728 4 C -0.197 4.197 5 C -0.110 4.110 6 C -0.138 4.138 7 H 0.143 0.857 8 C -0.163 4.163 9 C -0.011 4.011 10 H 0.101 0.899 11 N -0.351 5.351 12 C 0.363 3.637 13 O -0.469 6.469 14 C -0.205 4.205 15 C -0.321 4.321 16 S 0.512 5.488 17 C -0.368 4.368 18 C -0.149 4.149 19 O -0.362 6.362 20 Si 0.641 3.359 21 C -0.109 4.109 22 C -0.191 4.191 23 H 0.140 0.860 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.230 0.770 35 H 0.129 0.871 36 H 0.247 0.753 37 H -0.179 1.179 38 H -0.208 1.208 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -27.782 -8.269 17.262 33.738 hybrid contribution 1.348 0.776 1.808 2.385 sum -26.435 -7.493 19.071 33.446 Atomic orbital electron populations 1.24136 0.75312 1.09647 1.09683 1.44821 1.16099 1.19298 1.14713 0.72826 1.24196 1.05632 1.02731 0.87153 1.23902 0.94528 1.03871 0.88657 1.22774 0.93915 0.96596 1.00539 0.85715 1.23344 0.97336 0.96604 0.99052 1.22730 0.98419 0.98551 0.81405 0.89905 1.45655 1.19934 1.59269 1.10250 1.17865 0.81761 0.76937 0.87123 1.90811 1.47964 1.55213 1.52903 1.20116 0.97152 1.09223 0.94013 1.26192 1.05028 1.03624 0.97281 1.83083 1.09012 1.50547 1.06133 1.24845 1.03098 1.10913 0.97969 1.24622 0.84446 0.95860 1.09985 1.86521 1.33263 1.30433 1.85984 0.94280 0.79248 0.89156 0.73244 1.21025 0.97226 0.98192 0.94467 1.23750 0.98195 0.96947 1.00178 0.85970 0.85862 0.85554 0.85713 0.86379 0.85638 0.83540 0.83653 0.86439 0.90267 0.74477 0.76959 0.87095 0.75292 1.17876 1.20750 0.85565 0.91007 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.96 9.19 127.69 1.17 4.14 16 2 N -0.37 24.62 0.66 -948.84 -0.62 23.99 16 3 H 0.44 -29.64 8.44 -89.70 -0.76 -30.39 16 4 C -0.05 3.44 8.98 127.69 1.15 4.59 16 5 C 0.01 -0.77 4.48 86.30 0.39 -0.38 16 6 C -0.12 6.29 3.58 -10.26 -0.04 6.25 16 7 H 0.13 -6.70 6.10 -2.39 -0.01 -6.71 16 8 C -0.12 5.51 7.39 31.13 0.23 5.74 16 9 C 0.09 -3.16 4.24 45.52 0.19 -2.97 16 10 H 0.08 -2.10 7.46 -2.39 -0.02 -2.11 16 11 N -0.70 20.20 5.32 -443.52 -2.36 17.84 16 12 C 0.58 -9.39 7.79 86.60 0.67 -8.72 16 13 O -0.59 3.24 16.39 -4.14 -0.07 3.17 16 14 C -0.19 3.18 5.98 -19.87 -0.12 3.06 16 15 C -0.18 4.51 10.38 67.30 0.70 5.21 16 16 S 0.25 -5.38 20.20 -56.49 -1.14 -6.52 16 17 C -0.25 3.78 5.65 24.51 0.14 3.92 16 18 C -0.04 0.50 2.94 71.24 0.21 0.71 16 19 O -0.55 6.26 12.88 -148.98 -1.92 4.34 16 20 Si 0.74 -11.47 30.92 68.60 2.12 -9.35 16 21 C -0.08 0.91 9.95 22.67 0.23 1.14 16 22 C -0.15 6.70 7.43 31.12 0.23 6.93 16 23 H 0.12 -7.77 8.14 -2.39 -0.02 -7.79 16 24 H 0.12 -7.80 8.14 -2.39 -0.02 -7.82 16 25 H 0.13 -8.13 8.11 -2.39 -0.02 -8.15 16 26 H 0.12 -7.78 8.11 -2.39 -0.02 -7.80 16 27 H 0.12 -7.20 6.10 -2.39 -0.01 -7.21 16 28 H 0.13 -7.80 8.14 -2.39 -0.02 -7.82 16 29 H 0.15 -9.43 7.79 -2.39 -0.02 -9.44 16 30 H 0.15 -9.25 8.09 -2.38 -0.02 -9.27 16 31 H 0.12 -5.62 8.08 -2.39 -0.02 -5.63 16 32 H 0.08 -3.20 8.14 -2.39 -0.02 -3.22 16 33 H 0.42 -15.12 7.22 -92.71 -0.67 -15.79 16 34 H 0.21 -7.37 7.01 -2.91 -0.02 -7.39 16 35 H 0.11 -1.29 7.96 -2.39 -0.02 -1.31 16 36 H 0.40 -7.89 8.70 -74.05 -0.64 -8.53 16 37 H -0.25 3.28 7.11 99.48 0.71 3.99 16 38 H -0.28 2.02 7.11 99.48 0.71 2.72 16 39 H 0.13 -0.82 8.06 -2.91 -0.02 -0.84 16 40 H 0.07 -2.89 8.14 -2.39 -0.02 -2.91 16 41 H 0.11 -5.29 7.90 -2.39 -0.02 -5.31 16 Total: 1.00 -85.84 344.41 0.18 -85.66 By element: Atomic # 1 Polarization: -147.77 SS G_CDS: -0.98 Total: -148.75 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: 5.15 Total: 29.61 kcal Atomic # 7 Polarization: 44.82 SS G_CDS: -2.99 Total: 41.83 kcal Atomic # 8 Polarization: 9.50 SS G_CDS: -1.99 Total: 7.51 kcal Atomic # 14 Polarization: -11.47 SS G_CDS: 2.12 Total: -9.35 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.14 Total: -6.52 kcal Total: -85.84 0.18 -85.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.359 kcal (2) G-P(sol) polarization free energy of solvation -85.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds