Wall clock time and date at job start Sun Mar 7 2021 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 H 1.00901 * 109.47061 * 2 1 4 4 C 1.46900 * 109.46974 * 119.99788 * 2 1 3 5 5 C 1.46898 * 109.47234 * 239.99443 * 2 1 3 6 6 C 1.53000 * 109.47142 * 175.00044 * 5 2 1 7 7 H 1.09002 * 112.84949 * 45.33738 * 6 5 2 8 8 C 1.53781 * 113.61707 * 176.53297 * 6 5 2 9 9 C 1.53777 * 87.08336 * 140.06298 * 8 6 5 10 10 H 1.09003 * 113.60961 * 89.20081 * 9 8 6 11 11 N 1.46500 * 113.61534 * 220.01705 * 9 8 6 12 12 C 1.34779 * 119.99895 * 204.99945 * 11 9 8 13 13 O 1.21276 * 120.00229 * 0.02562 * 12 11 9 14 14 C 1.50701 * 119.99810 * 180.02562 * 12 11 9 15 15 N 1.46495 * 109.46917 * 180.02562 * 14 12 11 16 16 C 1.36829 * 125.06853 * 265.02542 * 15 14 12 17 17 C 1.34229 * 109.94429 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.50461 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47523 * 254.97819 * 18 17 16 20 20 Si 1.86302 * 109.46920 * 14.97860 * 18 17 16 21 21 C 1.46493 * 106.99869 * 0.02562 * 17 16 15 22 22 C 1.39590 * 134.03816 * 180.02562 * 21 17 16 23 23 C 1.36661 * 119.76079 * 179.97438 * 22 21 17 24 24 C 1.38795 * 120.53275 * 359.97438 * 23 22 21 25 25 C 1.37789 * 120.66136 * 359.97438 * 24 23 22 26 26 C 1.37702 * 125.05960 * 84.72410 * 15 14 12 27 27 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 28 28 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47230 * 300.00099 * 1 2 3 30 30 H 1.09003 * 109.47348 * 60.00488 * 1 2 3 31 31 H 1.08997 * 109.47234 * 300.00110 * 4 2 1 32 32 H 1.08999 * 109.47119 * 59.99865 * 4 2 1 33 33 H 1.09003 * 109.47359 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46658 * 55.00413 * 5 2 1 35 35 H 1.08992 * 109.47389 * 295.00410 * 5 2 1 36 36 H 1.08997 * 113.61673 * 254.61847 * 8 6 5 37 37 H 1.09005 * 113.61396 * 25.51675 * 8 6 5 38 38 H 0.97002 * 120.00084 * 25.00713 * 11 9 8 39 39 H 1.08995 * 109.47452 * 300.00609 * 14 12 11 40 40 H 1.09002 * 109.47008 * 59.99988 * 14 12 11 41 41 H 1.08005 * 125.02533 * 359.96286 * 16 15 14 42 42 H 1.09006 * 109.47174 * 134.97243 * 18 17 16 43 43 H 0.96695 * 113.99832 * 60.00152 * 19 18 17 44 44 H 1.48498 * 109.99932 * 179.97438 * 20 18 17 45 45 H 1.48497 * 110.00143 * 301.31832 * 20 18 17 46 46 H 1.07992 * 120.12306 * 359.97438 * 22 21 17 47 47 H 1.08001 * 119.73591 * 179.97438 * 23 22 21 48 48 H 1.07996 * 119.66586 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.10633 * 179.97438 * 25 24 23 50 50 H 1.08993 * 113.61636 * 270.87622 * 27 9 8 51 51 H 1.09008 * 113.61006 * 139.97865 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1995 5 6 1.9587 -0.6926 -1.1993 6 6 3.4835 -0.5846 -1.2638 7 1 3.9632 -0.7900 -0.3068 8 6 4.1062 -1.3518 -2.4421 9 6 5.0661 -0.1619 -2.6075 10 1 5.9791 -0.2524 -2.0189 11 7 5.3231 0.1949 -4.0049 12 6 6.4642 0.8295 -4.3395 13 8 7.2784 1.1046 -3.4838 14 6 6.7283 1.1970 -5.7769 15 7 8.0246 1.8719 -5.8780 16 6 8.2079 3.2278 -5.8683 17 6 9.5148 3.5140 -5.9772 18 6 10.1324 4.8883 -6.0046 19 8 10.5311 5.2049 -7.3398 20 14 8.8857 6.1411 -5.4153 21 6 10.2270 2.2368 -6.0644 22 6 11.5714 1.8820 -6.1886 23 6 11.9223 0.5624 -6.2447 24 6 10.9527 -0.4285 -6.1785 25 6 9.6201 -0.1005 -6.0548 26 6 9.2407 1.2360 -5.9912 27 6 3.9838 0.7027 -1.9399 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.5953 -0.1786 2.0894 32 1 1.5952 -1.7201 1.1995 33 1 3.0486 -0.6921 1.1998 34 1 1.5241 -0.2331 -2.0871 35 1 1.6703 -1.7428 -1.1557 36 1 4.6031 -2.2761 -2.1476 37 1 3.4269 -1.4851 -3.2841 38 1 4.6720 -0.0253 -4.6894 39 1 6.7408 0.2937 -6.3866 40 1 5.9424 1.8639 -6.1317 41 1 7.4178 3.9596 -5.7855 42 1 11.0042 4.9080 -5.3506 43 1 9.8043 5.2060 -7.9775 44 1 9.4827 7.5006 -5.4370 45 1 7.6788 6.1020 -6.2795 46 1 12.3314 2.6474 -6.2403 47 1 12.9625 0.2883 -6.3412 48 1 11.2456 -1.4670 -6.2245 49 1 8.8730 -0.8789 -6.0045 50 1 3.2711 1.1312 -2.6446 51 1 4.3820 1.4372 -1.2398 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:28:56 Heat of formation + Delta-G solvation = 135.646887 kcal Electronic energy + Delta-G solvation = -30152.969122 eV Core-core repulsion = 26139.086083 eV Total energy + Delta-G solvation = -4013.883039 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58383 -42.14412 -40.79013 -39.11276 -38.19253 -37.70823 -34.78744 -34.04240 -31.55017 -30.30442 -30.19520 -29.39087 -28.83376 -26.83927 -26.15443 -25.52298 -24.03179 -23.52913 -22.61287 -21.71228 -20.93138 -20.60797 -19.30376 -18.68741 -18.42149 -17.97027 -17.69795 -17.41668 -17.18668 -16.56301 -16.46488 -16.32727 -16.15631 -16.06973 -15.52358 -15.39859 -14.92014 -14.78278 -14.58601 -14.42769 -14.10383 -13.84198 -13.69226 -13.56430 -13.46692 -13.41923 -13.28381 -13.21921 -13.16302 -12.90154 -12.76528 -12.61599 -12.43565 -12.20782 -12.04362 -11.77135 -11.74913 -11.49300 -11.11959 -10.58581 -10.48248 -10.09937 -9.20403 -8.67017 -4.91918 0.09511 0.59054 1.03143 1.32111 1.39279 1.45372 1.54721 1.64599 1.98663 2.22299 2.89483 2.93496 2.97625 3.18784 3.40971 3.45204 3.50378 3.60118 3.62845 3.70841 3.74924 3.79505 3.83922 3.88161 4.00264 4.13050 4.17261 4.17810 4.25004 4.26386 4.36735 4.36914 4.45786 4.51669 4.54161 4.67131 4.68294 4.71771 4.73540 4.75026 4.82209 4.85155 4.87380 4.88936 4.97635 5.06731 5.09576 5.19902 5.45877 5.53615 5.61845 5.67648 5.70539 6.15224 6.20415 6.47333 6.57628 7.15821 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.002462 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.858776 B =11367.844582 C =12794.859205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.372 5.372 3 H 0.436 0.564 4 C -0.055 4.055 5 C 0.012 3.988 6 C -0.123 4.123 7 H 0.121 0.879 8 C -0.127 4.127 9 C 0.098 3.902 10 H 0.079 0.921 11 N -0.702 5.702 12 C 0.493 3.507 13 O -0.568 6.568 14 C 0.082 3.918 15 N -0.465 5.465 16 C 0.080 3.920 17 C -0.218 4.218 18 C -0.059 4.059 19 O -0.556 6.556 20 Si 0.778 3.222 21 C -0.118 4.118 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.109 4.109 25 C -0.131 4.131 26 C 0.093 3.907 27 C -0.149 4.149 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.421 0.579 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.202 0.798 42 H 0.098 0.902 43 H 0.384 0.616 44 H -0.310 1.310 45 H -0.254 1.254 46 H 0.113 0.887 47 H 0.131 0.869 48 H 0.144 0.856 49 H 0.137 0.863 50 H 0.116 0.884 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.579 -11.529 19.269 42.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.052 4.948 3 H 0.273 0.727 4 C -0.197 4.197 5 C -0.110 4.110 6 C -0.142 4.142 7 H 0.139 0.861 8 C -0.166 4.166 9 C -0.007 4.007 10 H 0.097 0.903 11 N -0.356 5.356 12 C 0.279 3.721 13 O -0.446 6.446 14 C -0.042 4.042 15 N -0.148 5.148 16 C -0.046 4.046 17 C -0.225 4.225 18 C -0.167 4.167 19 O -0.364 6.364 20 Si 0.680 3.320 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.175 4.175 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.012 4.012 27 C -0.187 4.187 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.260 0.740 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.219 0.781 42 H 0.116 0.884 43 H 0.233 0.767 44 H -0.239 1.239 45 H -0.179 1.179 46 H 0.131 0.869 47 H 0.149 0.851 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.134 0.866 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -36.305 -11.008 19.977 42.875 hybrid contribution 1.076 0.024 -1.522 1.864 sum -35.229 -10.983 18.455 41.259 Atomic orbital electron populations 1.24136 0.75355 1.09576 1.09739 1.44807 1.16052 1.19312 1.14676 0.72739 1.24186 1.05613 1.02677 0.87232 1.23893 0.94687 1.03723 0.88665 1.22779 0.93786 0.97120 1.00490 0.86091 1.23335 0.97526 0.96735 0.98960 1.22610 0.98078 0.97899 0.82102 0.90303 1.45783 1.20354 1.58838 1.10598 1.21278 0.81947 0.77708 0.91214 1.90825 1.47090 1.54515 1.52190 1.22046 0.84848 1.02630 0.94703 1.43418 1.04705 1.04791 1.61853 1.22002 0.97205 0.84277 1.01107 1.20704 0.93154 0.93919 1.14754 1.24712 1.07853 0.97615 0.86493 1.86583 1.39205 1.91806 1.18801 0.94222 0.75726 0.73558 0.88448 1.19361 0.93332 0.93356 1.06171 1.20445 0.94487 0.96697 0.99360 1.20912 1.00520 0.92580 1.03484 1.21133 0.92013 1.00225 0.99407 1.20217 0.97005 0.92349 1.05538 1.18340 0.85218 0.93914 1.03727 1.23720 0.98185 0.96619 1.00200 0.86133 0.85870 0.85426 0.85637 0.85879 0.86383 0.83398 0.84009 0.90805 0.86456 0.74026 0.84432 0.81984 0.78106 0.88364 0.76736 1.23850 1.17868 0.86886 0.85090 0.83794 0.84499 0.86594 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.03 9.19 127.69 1.17 4.21 16 2 N -0.37 25.06 0.66 -948.87 -0.62 24.44 16 3 H 0.44 -30.43 8.44 -89.69 -0.76 -31.19 16 4 C -0.05 3.49 8.97 127.69 1.15 4.63 16 5 C 0.01 -0.78 4.47 86.30 0.39 -0.40 16 6 C -0.12 6.72 3.56 -10.27 -0.04 6.68 16 7 H 0.12 -6.65 6.13 -2.39 -0.01 -6.67 16 8 C -0.13 5.89 7.39 31.12 0.23 6.12 16 9 C 0.10 -3.71 4.24 45.51 0.19 -3.52 16 10 H 0.08 -2.25 7.46 -2.39 -0.02 -2.27 16 11 N -0.70 24.91 5.35 -440.05 -2.36 22.55 16 12 C 0.49 -12.32 7.90 87.66 0.69 -11.62 16 13 O -0.57 7.16 16.02 -3.02 -0.05 7.11 16 14 C 0.08 -2.23 6.48 85.63 0.55 -1.68 16 15 N -0.47 7.34 2.27 -520.01 -1.18 6.16 16 16 C 0.08 -1.22 9.89 83.00 0.82 -0.39 16 17 C -0.22 1.89 5.58 -18.63 -0.10 1.78 16 18 C -0.06 0.51 3.06 71.24 0.22 0.73 16 19 O -0.56 2.80 12.88 -148.98 -1.92 0.88 16 20 Si 0.78 -11.26 30.82 68.60 2.11 -9.15 16 21 C -0.12 0.46 6.35 -20.20 -0.13 0.34 16 22 C -0.09 0.23 10.05 22.23 0.22 0.46 16 23 C -0.16 0.84 9.97 22.03 0.22 1.06 16 24 C -0.11 0.92 10.01 22.30 0.22 1.15 16 25 C -0.13 1.31 10.00 22.36 0.22 1.53 16 26 C 0.09 -0.78 6.80 39.03 0.27 -0.51 16 27 C -0.15 7.09 7.43 31.12 0.23 7.33 16 28 H 0.12 -7.76 8.14 -2.39 -0.02 -7.78 16 29 H 0.12 -7.92 8.14 -2.39 -0.02 -7.94 16 30 H 0.13 -8.39 8.11 -2.39 -0.02 -8.41 16 31 H 0.13 -7.91 8.14 -2.39 -0.02 -7.93 16 32 H 0.12 -7.75 8.11 -2.39 -0.02 -7.77 16 33 H 0.12 -7.31 6.12 -2.39 -0.01 -7.32 16 34 H 0.15 -9.79 7.82 -2.39 -0.02 -9.81 16 35 H 0.14 -9.14 8.09 -2.39 -0.02 -9.16 16 36 H 0.07 -3.08 8.14 -2.39 -0.02 -3.10 16 37 H 0.12 -5.86 8.08 -2.38 -0.02 -5.88 16 38 H 0.42 -18.01 8.73 -92.71 -0.81 -18.82 16 39 H 0.14 -4.28 8.14 -2.39 -0.02 -4.29 16 40 H 0.16 -5.78 8.12 -2.39 -0.02 -5.80 16 41 H 0.20 -4.65 6.27 -2.91 -0.02 -4.67 16 42 H 0.10 -0.67 7.96 -2.38 -0.02 -0.69 16 43 H 0.38 -4.63 8.70 -74.06 -0.64 -5.27 16 44 H -0.31 1.59 7.11 99.48 0.71 2.29 16 45 H -0.25 3.97 7.00 99.48 0.70 4.66 16 46 H 0.11 -0.27 8.06 -2.91 -0.02 -0.29 16 47 H 0.13 -1.10 8.06 -2.91 -0.02 -1.12 16 48 H 0.14 -1.92 8.06 -2.91 -0.02 -1.94 16 49 H 0.14 -2.21 8.06 -2.91 -0.02 -2.23 16 50 H 0.12 -5.94 7.92 -2.39 -0.02 -5.96 16 51 H 0.07 -3.20 8.14 -2.38 -0.02 -3.22 16 Total: 1.00 -93.99 410.58 1.28 -92.71 By element: Atomic # 1 Polarization: -161.35 SS G_CDS: -1.24 Total: -162.58 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.53 Total: 17.89 kcal Atomic # 7 Polarization: 57.30 SS G_CDS: -4.16 Total: 53.14 kcal Atomic # 8 Polarization: 9.96 SS G_CDS: -1.97 Total: 7.99 kcal Atomic # 14 Polarization: -11.26 SS G_CDS: 2.11 Total: -9.15 kcal Total: -93.99 1.28 -92.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.354 kcal (2) G-P(sol) polarization free energy of solvation -93.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds