Wall clock time and date at job start Sun Mar 7 2021 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36773 * 125.79758 * 2 1 4 4 C 1.47259 * 126.94493 * 0.02562 * 3 2 1 5 5 O 1.21630 * 120.00125 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00234 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00070 * 180.02562 * 6 4 3 8 8 H 1.09000 * 112.85176 * 23.79932 * 7 6 4 9 9 C 1.53781 * 113.61572 * 155.00214 * 7 6 4 10 10 C 1.53776 * 87.08200 * 139.98051 * 9 7 6 11 11 H 1.09002 * 113.61840 * 89.11374 * 10 9 7 12 12 C 1.53001 * 113.61432 * 219.93696 * 10 9 7 13 13 N 1.46904 * 109.47129 * 184.99988 * 12 10 9 14 14 H 1.00896 * 109.46991 * 54.99650 * 13 12 10 15 15 C 1.46902 * 109.47048 * 174.99859 * 13 12 10 16 16 C 1.46896 * 109.47223 * 294.99454 * 13 12 10 17 17 C 1.53783 * 113.61190 * 252.50095 * 7 6 4 18 18 C 1.46691 * 106.11342 * 180.02562 * 3 2 1 19 19 C 1.34484 * 106.33244 * 359.97438 * 18 3 2 20 20 C 1.50693 * 125.57204 * 179.97438 * 19 18 3 21 21 O 1.42907 * 109.47661 * 300.00709 * 20 19 18 22 22 Si 1.86298 * 109.47618 * 180.02562 * 20 19 18 23 23 N 1.34662 * 125.80622 * 180.26684 * 2 1 3 24 24 H 1.09000 * 109.47273 * 90.00798 * 1 2 3 25 25 H 1.09006 * 109.46955 * 209.99942 * 1 2 3 26 26 H 1.09000 * 109.47605 * 329.99975 * 1 2 3 27 27 H 0.96995 * 119.99557 * 0.02562 * 6 4 3 28 28 H 1.09001 * 113.61228 * 254.52788 * 9 7 6 29 29 H 1.08999 * 113.61169 * 25.42695 * 9 7 6 30 30 H 1.09001 * 109.46983 * 305.00027 * 12 10 9 31 31 H 1.09004 * 109.47317 * 64.99890 * 12 10 9 32 32 H 1.09002 * 109.46778 * 59.99700 * 15 13 12 33 33 H 1.08999 * 109.47331 * 180.02562 * 15 13 12 34 34 H 1.09006 * 109.47200 * 300.00084 * 15 13 12 35 35 H 1.09002 * 109.47329 * 300.00745 * 16 13 12 36 36 H 1.09006 * 109.46665 * 60.00079 * 16 13 12 37 37 H 1.08991 * 109.47684 * 179.97438 * 16 13 12 38 38 H 1.08998 * 113.61218 * 334.56120 * 17 7 6 39 39 H 1.08993 * 113.61740 * 105.47225 * 17 7 6 40 40 H 1.07998 * 126.82958 * 180.02562 * 18 3 2 41 41 H 1.09000 * 109.46936 * 60.00332 * 20 19 18 42 42 H 0.96697 * 114.00527 * 179.97438 * 21 20 19 43 43 H 1.48506 * 109.99834 * 298.68714 * 22 20 19 44 44 H 1.48502 * 110.00011 * 59.99978 * 22 20 19 45 45 H 0.97002 * 124.84426 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5156 0.0005 5 8 0.6838 2.7839 0.0015 6 7 2.7848 3.5055 -0.0001 7 6 2.3502 4.9045 0.0010 8 1 1.3474 5.0359 0.4075 9 6 3.3876 5.8715 0.5957 10 6 3.0046 6.8489 -0.5279 11 1 2.1804 7.5129 -0.2671 12 6 4.1999 7.5927 -1.1271 13 7 3.7221 8.5828 -2.1016 14 1 3.0495 9.1916 -1.6602 15 6 4.8573 9.3781 -2.5882 16 6 3.0886 7.8910 -3.2320 17 6 2.5705 5.6190 -1.3428 18 6 3.6882 0.6152 -0.0006 19 6 3.6095 -0.7273 -0.0004 20 6 4.7819 -1.6741 -0.0014 21 8 5.5748 -1.4494 -1.1689 22 14 4.1616 -3.4308 -0.0013 23 7 2.2948 -1.0921 -0.0051 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.7309 3.2915 -0.0012 28 1 3.1298 6.2294 1.5925 29 1 4.4128 5.5078 0.5275 30 1 4.7476 8.0998 -0.3327 31 1 4.8582 6.8810 -1.6253 32 1 5.5839 8.7202 -3.0650 33 1 4.5028 10.1130 -3.3109 34 1 5.3274 9.8915 -1.7494 35 1 3.8152 7.2331 -3.7088 36 1 2.2463 7.3008 -2.8709 37 1 2.7337 8.6255 -3.9548 38 1 3.3725 5.1864 -1.9409 39 1 1.6532 5.7733 -1.9109 40 1 4.5889 1.2111 -0.0004 41 1 5.3882 -1.5025 0.8880 42 1 6.3489 -2.0251 -1.2355 43 1 3.3617 -3.6869 1.2234 44 1 3.3338 -3.6771 -1.2093 45 1 1.9734 -2.0073 -0.0090 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608394_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:00 Heat of formation + Delta-G solvation = 104.101794 kcal Electronic energy + Delta-G solvation = -24119.190876 eV Core-core repulsion = 20644.155979 eV Total energy + Delta-G solvation = -3475.034897 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64362 -42.18196 -40.52610 -38.89390 -37.68879 -34.71151 -33.03025 -32.28350 -30.08996 -29.49520 -29.06986 -26.70100 -26.25741 -25.41604 -24.18337 -22.71016 -21.61501 -21.28333 -20.41018 -19.07712 -18.57868 -18.22404 -17.95973 -17.40690 -17.27158 -16.69822 -16.38158 -15.95316 -15.84114 -15.36761 -15.23550 -14.79584 -14.62168 -14.41749 -14.27121 -13.96237 -13.84970 -13.61474 -13.56072 -13.50761 -13.39500 -13.27867 -13.06389 -12.98800 -12.81016 -12.58215 -12.29286 -12.17598 -11.76248 -11.47210 -11.00203 -10.44048 -10.21421 -9.89970 -9.28398 -5.16413 0.53365 1.03776 1.04616 1.17519 1.49374 1.74870 1.79573 2.33580 2.39908 2.90598 2.98172 3.22505 3.35920 3.36709 3.48563 3.61939 3.75224 3.78537 3.81225 3.94984 4.02947 4.04760 4.17045 4.21916 4.34151 4.36793 4.41114 4.41569 4.48967 4.50878 4.60685 4.69054 4.72448 4.76653 4.78201 4.84838 4.86483 4.88918 4.97090 5.04732 5.07438 5.26219 5.56440 5.60623 5.72079 6.12120 6.56436 6.84317 7.27024 Molecular weight = 295.18amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.003300 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.804393 B = 8481.929608 C = 9292.056935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.103 3.897 3 C -0.260 4.260 4 C 0.591 3.409 5 O -0.586 6.586 6 N -0.704 5.704 7 C 0.096 3.904 8 H 0.086 0.914 9 C -0.127 4.127 10 C -0.115 4.115 11 H 0.127 0.873 12 C 0.013 3.987 13 N -0.369 5.369 14 H 0.438 0.562 15 C -0.046 4.046 16 C -0.057 4.057 17 C -0.152 4.152 18 C -0.123 4.123 19 C -0.003 4.003 20 C -0.036 4.036 21 O -0.559 6.559 22 Si 0.757 3.243 23 N -0.555 5.555 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.413 0.587 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.175 0.825 41 H 0.112 0.888 42 H 0.408 0.592 43 H -0.287 1.287 44 H -0.297 1.297 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 25.562 -6.497 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.270 4.270 4 C 0.381 3.619 5 O -0.468 6.468 6 N -0.355 5.355 7 C -0.009 4.009 8 H 0.104 0.896 9 C -0.166 4.166 10 C -0.134 4.134 11 H 0.145 0.855 12 C -0.109 4.109 13 N 0.054 4.946 14 H 0.276 0.724 15 C -0.188 4.188 16 C -0.200 4.200 17 C -0.191 4.191 18 C -0.147 4.147 19 C -0.110 4.110 20 C -0.148 4.148 21 O -0.369 6.369 22 Si 0.663 3.337 23 N -0.154 5.154 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.250 0.750 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.192 0.808 41 H 0.130 0.870 42 H 0.260 0.740 43 H -0.214 1.214 44 H -0.224 1.224 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.100 25.382 -6.725 27.790 hybrid contribution -0.572 -0.598 0.339 0.895 sum 8.528 24.784 -6.386 26.977 Atomic orbital electron populations 1.20604 0.86369 1.04489 1.03921 1.20706 0.94376 0.85845 1.00647 1.20337 0.93815 0.92288 1.20596 1.17430 0.85237 0.84702 0.74577 1.90741 1.18329 1.84851 1.52927 1.45609 1.09664 1.05417 1.74769 1.22711 0.99838 0.78988 0.99375 0.89625 1.23325 0.99978 0.94257 0.99042 1.22691 0.98506 0.95598 0.96569 0.85464 1.23887 0.98384 0.93953 0.94714 1.44827 1.17659 1.16452 1.15632 0.72437 1.24131 0.89535 0.99034 1.06077 1.24267 1.03124 1.02597 0.89999 1.23847 1.03257 0.95583 0.96385 1.22010 0.95622 0.92358 1.04737 1.19851 0.83643 0.95594 1.11947 1.23912 0.92460 1.05943 0.92505 1.86414 1.43283 1.65418 1.41798 0.93548 0.85916 0.77885 0.76369 1.41943 1.06160 1.08531 1.58811 0.89884 0.90305 0.89138 0.74951 0.90292 0.87012 0.83122 0.84406 0.86278 0.85764 0.85383 0.86079 0.86796 0.85464 0.87467 0.90496 0.80812 0.87031 0.74015 1.21356 1.22401 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.10 9.88 71.23 0.70 1.80 16 2 C 0.10 -1.02 7.17 41.78 0.30 -0.72 16 3 C -0.26 3.07 6.29 -19.04 -0.12 2.95 16 4 C 0.59 -7.87 7.81 86.61 0.68 -7.19 16 5 O -0.59 3.53 14.41 -4.13 -0.06 3.47 16 6 N -0.70 17.43 5.35 -443.45 -2.37 15.06 16 7 C 0.10 -3.00 4.24 45.52 0.19 -2.81 16 8 H 0.09 -2.05 7.46 -2.39 -0.02 -2.07 16 9 C -0.13 5.28 7.39 31.12 0.23 5.51 16 10 C -0.11 5.83 3.30 -10.27 -0.03 5.79 16 11 H 0.13 -6.70 8.09 -2.39 -0.02 -6.72 16 12 C 0.01 -0.76 4.57 86.30 0.39 -0.37 16 13 N -0.37 23.87 0.66 -948.82 -0.62 23.25 16 14 H 0.44 -29.92 8.40 -89.70 -0.75 -30.67 16 15 C -0.05 2.91 9.19 127.69 1.17 4.08 16 16 C -0.06 3.45 8.57 127.69 1.09 4.54 16 17 C -0.15 6.40 5.69 31.12 0.18 6.57 16 18 C -0.12 1.91 10.43 23.62 0.25 2.16 16 19 C 0.00 0.04 6.14 40.98 0.25 0.29 16 20 C -0.04 0.69 2.97 71.23 0.21 0.90 16 21 O -0.56 10.84 12.84 -148.98 -1.91 8.93 16 22 Si 0.76 -13.82 30.94 68.60 2.12 -11.69 16 23 N -0.55 6.37 5.41 -171.08 -0.93 5.44 16 24 H 0.08 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H 0.08 -1.12 8.14 -2.38 -0.02 -1.14 16 26 H 0.09 -0.75 6.46 -2.39 -0.02 -0.76 16 27 H 0.41 -12.32 7.85 -92.71 -0.73 -13.05 16 28 H 0.08 -3.00 8.14 -2.39 -0.02 -3.02 16 29 H 0.11 -4.91 8.08 -2.39 -0.02 -4.93 16 30 H 0.15 -9.44 8.09 -2.39 -0.02 -9.46 16 31 H 0.14 -8.39 7.79 -2.39 -0.02 -8.41 16 32 H 0.12 -7.38 8.14 -2.39 -0.02 -7.40 16 33 H 0.12 -7.74 8.14 -2.39 -0.02 -7.76 16 34 H 0.13 -8.11 8.11 -2.38 -0.02 -8.13 16 35 H 0.12 -7.18 8.11 -2.39 -0.02 -7.20 16 36 H 0.11 -6.46 5.13 -2.38 -0.01 -6.47 16 37 H 0.13 -7.66 8.14 -2.39 -0.02 -7.68 16 38 H 0.11 -4.71 7.90 -2.39 -0.02 -4.73 16 39 H 0.08 -3.05 7.19 -2.39 -0.02 -3.07 16 40 H 0.17 -3.89 7.69 -2.91 -0.02 -3.91 16 41 H 0.11 -2.66 7.96 -2.39 -0.02 -2.68 16 42 H 0.41 -11.87 8.74 -74.06 -0.65 -12.52 16 43 H -0.29 3.57 7.11 99.48 0.71 4.28 16 44 H -0.30 3.08 7.11 99.48 0.71 3.78 16 45 H 0.41 -5.45 6.70 -92.71 -0.62 -6.07 16 Total: 1.00 -82.86 356.13 0.04 -82.83 By element: Atomic # 1 Polarization: -149.10 SS G_CDS: -1.69 Total: -150.80 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 5.50 Total: 23.51 kcal Atomic # 7 Polarization: 47.68 SS G_CDS: -3.92 Total: 43.75 kcal Atomic # 8 Polarization: 14.37 SS G_CDS: -1.97 Total: 12.40 kcal Atomic # 14 Polarization: -13.82 SS G_CDS: 2.12 Total: -11.69 kcal Total: -82.86 0.04 -82.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608394_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.929 kcal (2) G-P(sol) polarization free energy of solvation -82.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds