Wall clock time and date at job start Sun Mar 7 2021 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00893 * 109.46956 * 2 1 4 4 C 1.46899 * 109.47046 * 120.00214 * 2 1 3 5 5 C 1.46895 * 109.47024 * 240.00215 * 2 1 3 6 6 C 1.52999 * 109.47056 * 174.99775 * 5 2 1 7 7 H 1.08993 * 112.90825 * 316.24939 * 6 5 2 8 8 C 1.53962 * 113.66529 * 87.55186 * 6 5 2 9 9 C 1.53782 * 87.11063 * 139.88900 * 8 6 5 10 10 H 1.09001 * 113.61250 * 220.08565 * 9 8 6 11 11 N 1.46496 * 113.68971 * 89.19569 * 9 8 6 12 12 C 1.34784 * 119.99758 * 107.45966 * 11 9 8 13 13 O 1.21696 * 120.00002 * 0.02562 * 12 11 9 14 14 C 1.46674 * 119.99819 * 179.97438 * 12 11 9 15 15 C 1.37875 * 126.23430 * 180.02562 * 14 12 11 16 16 C 1.39828 * 107.08983 * 180.02562 * 15 14 12 17 17 C 1.50704 * 126.07163 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.46671 * 299.99901 * 17 16 15 19 19 Si 1.86295 * 109.47386 * 179.97438 * 17 16 15 20 20 C 1.35454 * 107.86600 * 359.97438 * 16 15 14 21 21 N 1.35543 * 108.86901 * 359.73495 * 20 16 15 22 22 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 23 23 H 1.09001 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47124 * 299.99716 * 1 2 3 25 25 H 1.09001 * 109.47450 * 59.99435 * 1 2 3 26 26 H 1.09004 * 109.46853 * 299.99646 * 4 2 1 27 27 H 1.09001 * 109.47482 * 59.99951 * 4 2 1 28 28 H 1.09001 * 109.47098 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47616 * 54.99597 * 5 2 1 30 30 H 1.09004 * 109.47026 * 294.99674 * 5 2 1 31 31 H 1.08997 * 113.53543 * 25.33574 * 8 6 5 32 32 H 1.08994 * 113.66446 * 254.45777 * 8 6 5 33 33 H 0.97001 * 120.00688 * 287.46664 * 11 9 8 34 34 H 1.08008 * 126.45307 * 359.96764 * 15 14 12 35 35 H 1.08997 * 109.46840 * 59.99634 * 17 16 15 36 36 H 0.96704 * 113.99479 * 179.97438 * 18 17 16 37 37 H 1.48503 * 110.00055 * 298.67959 * 19 17 16 38 38 H 1.48503 * 109.99844 * 59.99576 * 19 17 16 39 39 H 1.07996 * 125.56777 * 180.02562 * 20 16 15 40 40 H 0.97001 * 125.68132 * 180.30243 * 21 20 16 41 41 H 1.09002 * 113.61445 * 139.98212 * 22 9 8 42 42 H 1.09002 * 113.61408 * 270.79943 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9586 -0.6924 -1.1994 6 6 3.4834 -0.5844 -1.2639 7 1 3.8483 0.4151 -1.0278 8 6 4.2151 -1.7042 -0.5015 9 6 5.2164 -1.7377 -1.6682 10 1 5.5271 -2.7443 -1.9481 11 7 6.3456 -0.8195 -1.5012 12 6 7.5708 -1.3031 -1.2154 13 8 7.7391 -2.5025 -1.0965 14 6 8.7016 -0.3839 -1.0488 15 6 10.0023 -0.7363 -0.7573 16 6 10.7432 0.4475 -0.6887 17 6 12.2173 0.5559 -0.3946 18 8 12.4881 -0.0002 0.8936 19 14 12.7249 2.3483 -0.4171 20 6 9.9011 1.4797 -0.9345 21 7 8.6588 0.9874 -1.1610 22 6 4.0890 -1.1737 -2.5489 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.5953 -0.1786 2.0894 27 1 1.5953 -1.7202 1.1994 28 1 3.0487 -0.6929 1.1992 29 1 1.5240 -0.2330 -2.0872 30 1 1.6703 -1.7427 -1.1558 31 1 3.6293 -2.6180 -0.4025 32 1 4.6538 -1.3772 0.4411 33 1 6.2117 0.1365 -1.5962 34 1 10.3779 -1.7380 -0.6090 35 1 12.7799 0.0098 -1.1517 36 1 13.4201 0.0353 1.1492 37 1 12.4779 2.9293 -1.7613 38 1 11.9648 3.1043 0.6104 39 1 10.1758 2.5240 -0.9521 40 1 7.8702 1.5139 -1.3657 41 1 4.4259 -0.4185 -3.2590 42 1 3.4696 -1.9425 -3.0108 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:09 Heat of formation + Delta-G solvation = 111.507468 kcal Electronic energy + Delta-G solvation = -22151.300992 eV Core-core repulsion = 18832.124848 eV Total energy + Delta-G solvation = -3319.176144 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.71168 -42.23786 -40.70454 -39.04099 -37.62764 -34.83055 -32.79414 -31.10435 -30.05657 -29.54328 -26.83462 -26.70834 -25.89477 -24.61725 -23.61233 -21.50301 -20.90712 -20.78902 -19.75235 -19.12426 -18.31323 -17.96004 -17.50282 -17.20208 -16.97856 -16.49643 -15.88887 -15.57508 -15.18136 -15.16492 -15.01485 -14.86415 -14.41252 -14.18139 -14.07077 -13.80419 -13.60709 -13.57673 -13.48083 -13.33834 -13.11302 -12.81817 -12.52419 -12.24563 -11.98294 -11.77252 -11.50115 -11.43551 -10.39032 -10.37491 -9.98868 -9.47309 -4.88238 0.15049 0.99424 1.25177 1.41156 1.70907 1.73263 1.91681 1.98488 2.08817 2.82848 2.91514 3.14684 3.28276 3.40021 3.52944 3.61742 3.70440 3.73209 3.85978 3.95745 4.00042 4.13832 4.16747 4.18222 4.28978 4.36856 4.46813 4.55589 4.64212 4.66336 4.69424 4.72639 4.75666 4.79186 4.82121 4.85008 4.87098 4.95368 5.03863 5.37451 5.41927 5.54073 6.15705 6.34849 6.92055 6.94190 Molecular weight = 281.17amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.003335 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.480329 B = 8392.551205 C = 8715.581520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.367 5.367 3 H 0.439 0.561 4 C -0.057 4.057 5 C 0.009 3.991 6 C -0.118 4.118 7 H 0.131 0.869 8 C -0.152 4.152 9 C 0.088 3.912 10 H 0.071 0.929 11 N -0.695 5.695 12 C 0.595 3.405 13 O -0.570 6.570 14 C -0.062 4.062 15 C -0.108 4.108 16 C -0.190 4.190 17 C -0.058 4.058 18 O -0.572 6.572 19 Si 0.777 3.223 20 C 0.034 3.966 21 N -0.509 5.509 22 C -0.124 4.124 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.400 0.600 37 H -0.280 1.280 38 H -0.286 1.286 39 H 0.188 0.812 40 H 0.439 0.561 41 H 0.085 0.915 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.099 6.960 1.575 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.056 4.944 3 H 0.276 0.724 4 C -0.200 4.200 5 C -0.113 4.113 6 C -0.136 4.136 7 H 0.149 0.851 8 C -0.190 4.190 9 C -0.017 4.017 10 H 0.089 0.911 11 N -0.346 5.346 12 C 0.383 3.617 13 O -0.448 6.448 14 C -0.175 4.175 15 C -0.135 4.135 16 C -0.196 4.196 17 C -0.168 4.168 18 O -0.381 6.381 19 Si 0.680 3.320 20 C -0.103 4.103 21 N -0.108 5.108 22 C -0.163 4.163 23 H 0.136 0.864 24 H 0.142 0.858 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.250 0.750 37 H -0.206 1.206 38 H -0.213 1.213 39 H 0.205 0.795 40 H 0.281 0.719 41 H 0.104 0.896 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -29.199 6.616 1.478 29.976 hybrid contribution 0.079 0.014 -0.275 0.287 sum -29.120 6.630 1.203 29.890 Atomic orbital electron populations 1.24132 0.75452 1.09466 1.09792 1.44807 1.15981 1.19222 1.14389 0.72416 1.24266 1.05493 1.02725 0.87506 1.23921 0.95043 1.03630 0.88708 1.23028 0.92811 1.00756 0.97011 0.85123 1.23834 0.97209 1.00489 0.97456 1.22105 0.85692 0.94062 0.99817 0.91055 1.45281 1.06715 1.10934 1.71716 1.17029 0.82387 0.86401 0.75927 1.90889 1.84597 1.16701 1.52644 1.20244 0.95802 0.83348 1.18108 1.21282 0.91848 0.98871 1.01463 1.19227 0.95767 0.93178 1.11415 1.24356 0.92926 1.11991 0.87481 1.86438 1.33453 1.84740 1.33457 0.93523 0.89592 0.71374 0.77508 1.21950 0.84292 0.99065 1.05012 1.41643 1.10326 1.05178 1.53615 1.23276 0.95095 1.01725 0.96202 0.86421 0.85755 0.85342 0.85495 0.86169 0.86735 0.83091 0.84592 0.86928 0.90351 0.74989 0.85305 0.90759 0.74991 1.20632 1.21264 0.79527 0.71901 0.89628 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.00 9.19 127.69 1.17 4.17 16 2 N -0.37 24.46 0.66 -948.83 -0.62 23.83 16 3 H 0.44 -31.04 8.41 -89.70 -0.75 -31.79 16 4 C -0.06 3.54 8.57 127.69 1.09 4.63 16 5 C 0.01 -0.55 4.57 86.30 0.39 -0.16 16 6 C -0.12 6.35 3.20 -10.20 -0.03 6.32 16 7 H 0.13 -7.57 8.10 -2.39 -0.02 -7.58 16 8 C -0.15 6.71 5.70 31.18 0.18 6.89 16 9 C 0.09 -2.99 4.32 45.52 0.20 -2.79 16 10 H 0.07 -1.73 7.46 -2.39 -0.02 -1.74 16 11 N -0.69 20.89 5.26 -443.99 -2.34 18.56 16 12 C 0.59 -9.77 7.79 86.44 0.67 -9.10 16 13 O -0.57 3.16 16.48 -4.33 -0.07 3.09 16 14 C -0.06 0.94 7.06 40.35 0.28 1.22 16 15 C -0.11 0.87 10.59 22.57 0.24 1.11 16 16 C -0.19 2.06 5.47 -20.12 -0.11 1.95 16 17 C -0.06 0.77 3.01 71.24 0.21 0.98 16 18 O -0.57 6.44 12.86 -148.98 -1.92 4.52 16 19 Si 0.78 -13.57 30.59 68.60 2.10 -11.48 16 20 C 0.03 -0.59 10.45 83.48 0.87 0.28 16 21 N -0.51 11.64 5.99 -183.62 -1.10 10.54 16 22 C -0.12 5.49 7.38 31.12 0.23 5.72 16 23 H 0.12 -7.36 8.14 -2.39 -0.02 -7.38 16 24 H 0.12 -7.89 8.14 -2.38 -0.02 -7.91 16 25 H 0.13 -8.29 8.11 -2.39 -0.02 -8.31 16 26 H 0.13 -7.82 8.14 -2.38 -0.02 -7.84 16 27 H 0.12 -7.25 8.11 -2.39 -0.02 -7.27 16 28 H 0.11 -6.73 5.14 -2.39 -0.01 -6.74 16 29 H 0.15 -9.74 8.09 -2.39 -0.02 -9.75 16 30 H 0.14 -8.40 7.79 -2.38 -0.02 -8.42 16 31 H 0.11 -5.14 7.90 -2.39 -0.02 -5.16 16 32 H 0.08 -3.29 7.19 -2.39 -0.02 -3.31 16 33 H 0.41 -15.79 7.84 -92.71 -0.73 -16.52 16 34 H 0.13 -0.55 8.06 -2.91 -0.02 -0.57 16 35 H 0.07 -1.08 7.96 -2.39 -0.02 -1.10 16 36 H 0.40 -8.41 8.74 -74.05 -0.65 -9.06 16 37 H -0.28 3.84 7.11 99.48 0.71 4.54 16 38 H -0.29 3.47 7.11 99.48 0.71 4.18 16 39 H 0.19 -3.97 6.19 -2.91 -0.02 -3.99 16 40 H 0.44 -14.64 8.19 -92.71 -0.76 -15.40 16 41 H 0.09 -3.64 8.14 -2.39 -0.02 -3.66 16 42 H 0.11 -5.11 8.10 -2.39 -0.02 -5.13 16 Total: 1.00 -89.29 337.29 -0.33 -89.63 By element: Atomic # 1 Polarization: -158.13 SS G_CDS: -1.79 Total: -159.92 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.41 Total: 21.22 kcal Atomic # 7 Polarization: 56.99 SS G_CDS: -4.06 Total: 52.93 kcal Atomic # 8 Polarization: 9.60 SS G_CDS: -1.99 Total: 7.62 kcal Atomic # 14 Polarization: -13.57 SS G_CDS: 2.10 Total: -11.48 kcal Total: -89.29 -0.33 -89.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.136 kcal (2) G-P(sol) polarization free energy of solvation -89.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds