Wall clock time and date at job start Sun Mar 7 2021 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 125.56056 * 2 1 4 4 C 1.50696 * 126.06894 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47221 * 156.73515 * 4 3 2 6 6 Si 1.86302 * 109.47272 * 36.73290 * 4 3 2 7 7 C 1.39834 * 107.86653 * 179.73391 * 3 2 1 8 8 C 1.50692 * 126.46255 * 180.24112 * 7 3 2 9 9 C 1.37877 * 107.08260 * 0.26545 * 7 3 2 10 10 C 1.46675 * 126.23467 * 179.97438 * 9 7 3 11 11 O 1.21697 * 119.99873 * 359.97438 * 10 9 7 12 12 N 1.34782 * 120.00257 * 180.02562 * 10 9 7 13 13 C 1.46493 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.09003 * 112.85086 * 336.18918 * 13 12 10 15 15 C 1.53775 * 113.61668 * 107.49679 * 13 12 10 16 16 C 1.53783 * 87.08298 * 89.11519 * 15 13 12 17 17 H 1.08997 * 113.61549 * 270.88956 * 16 15 13 18 18 C 1.52995 * 113.61811 * 139.97984 * 16 15 13 19 19 N 1.46899 * 109.47403 * 87.50606 * 18 16 15 20 20 H 1.00911 * 109.46832 * 305.00114 * 19 18 16 21 21 C 1.46895 * 109.47045 * 64.99490 * 19 18 16 22 22 C 1.46894 * 109.47425 * 185.00193 * 19 18 16 23 23 C 1.53782 * 87.08023 * 25.43308 * 16 15 13 24 24 N 1.35536 * 125.56647 * 180.19228 * 2 1 3 25 25 H 1.09006 * 109.46980 * 84.06324 * 1 2 3 26 26 H 1.08997 * 109.46742 * 204.05884 * 1 2 3 27 27 H 1.08997 * 109.47616 * 324.06159 * 1 2 3 28 28 H 1.09008 * 109.47368 * 276.73618 * 4 3 2 29 29 H 0.96698 * 113.99607 * 299.99344 * 5 4 3 30 30 H 1.48499 * 109.99952 * 58.68546 * 6 4 3 31 31 H 1.48504 * 109.99987 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.47265 * 89.99964 * 8 7 3 33 33 H 1.08999 * 109.47567 * 210.00137 * 8 7 3 34 34 H 1.09001 * 109.47276 * 330.00403 * 8 7 3 35 35 H 0.96999 * 119.99807 * 359.97438 * 12 10 9 36 36 H 1.09001 * 113.61532 * 203.66370 * 15 13 12 37 37 H 1.09000 * 113.61674 * 334.56694 * 15 13 12 38 38 H 1.09005 * 109.47462 * 207.50317 * 18 16 15 39 39 H 1.09001 * 109.47052 * 327.50364 * 18 16 15 40 40 H 1.09001 * 109.47176 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47939 * 300.00704 * 21 19 18 42 42 H 1.09002 * 109.46945 * 60.00934 * 21 19 18 43 43 H 1.09000 * 109.47482 * 59.99988 * 22 19 18 44 44 H 1.09003 * 109.47108 * 179.97438 * 22 19 18 45 45 H 1.08993 * 109.47435 * 299.99637 * 22 19 18 46 46 H 1.09003 * 113.61933 * 220.02421 * 23 16 15 47 47 H 1.09000 * 113.61768 * 89.11639 * 23 16 15 48 48 H 0.96994 * 125.67496 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5321 0.0005 5 8 2.8446 3.3741 0.5325 6 14 0.2885 2.6776 1.0517 7 6 3.6270 0.6769 0.0062 8 6 4.8485 1.5593 0.0135 9 6 3.6123 -0.7018 0.0037 10 6 4.7860 -1.5813 0.0078 11 8 5.9049 -1.1028 0.0134 12 7 4.6254 -2.9195 0.0042 13 6 5.7978 -3.7980 0.0088 14 1 6.6898 -3.3155 -0.3909 15 6 6.0295 -4.5091 1.3524 16 6 5.1228 -5.6333 0.8242 17 1 4.0660 -5.4815 1.0436 18 6 5.6111 -7.0367 1.1886 19 7 5.0758 -7.4156 2.5031 20 1 5.3260 -6.7133 3.1832 21 6 3.6128 -7.5213 2.4240 22 6 5.6394 -8.7107 2.9066 23 6 5.5282 -5.1882 -0.5909 24 7 2.2954 -1.1025 -0.0037 25 1 -0.3633 0.1063 -1.0222 26 1 -0.3633 -0.9384 0.4189 27 1 -0.3634 0.8320 0.6031 28 1 1.5905 2.8392 -1.0199 29 1 3.0996 3.1579 1.4399 30 1 0.5798 2.2316 2.4379 31 1 -0.1902 4.0833 1.0599 32 1 5.1378 1.7708 1.0429 33 1 5.6668 1.0514 -0.4969 34 1 4.6244 2.4942 -0.5002 35 1 3.7336 -3.3010 -0.0007 36 1 7.0625 -4.8190 1.5100 37 1 5.6115 -3.9760 2.2064 38 1 5.2667 -7.7477 0.4375 39 1 6.7005 -7.0446 1.2239 40 1 3.2156 -7.8020 3.3995 41 1 3.1946 -6.5604 2.1246 42 1 3.3426 -8.2800 1.6894 43 1 6.7250 -8.6322 2.9653 44 1 5.2425 -8.9915 3.8822 45 1 5.3692 -9.4693 2.1721 46 1 4.7056 -5.2032 -1.3059 47 1 6.4242 -5.6837 -0.9646 48 1 1.9835 -2.0209 -0.0071 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:25 Heat of formation + Delta-G solvation = 103.121522 kcal Electronic energy + Delta-G solvation = -26440.357017 eV Core-core repulsion = 22809.741994 eV Total energy + Delta-G solvation = -3630.615024 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.197 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76170 -42.17945 -40.68329 -39.02089 -37.96676 -34.82185 -33.70608 -32.98166 -30.22797 -29.40143 -29.36321 -27.55450 -26.89777 -26.51438 -25.69262 -23.85662 -22.75914 -20.91668 -20.70331 -20.25043 -19.54885 -19.18524 -17.80561 -17.70548 -17.32896 -16.97055 -16.74896 -16.57798 -16.04010 -15.96869 -15.36672 -15.32172 -14.94256 -14.73047 -14.41058 -14.34100 -13.99900 -13.83272 -13.78255 -13.69673 -13.56838 -13.50139 -13.31273 -13.25652 -13.15340 -13.13937 -12.86841 -12.62196 -12.44809 -12.06651 -11.92412 -11.74355 -11.38998 -11.28316 -10.68010 -10.28463 -9.54135 -9.03156 -4.80095 0.28746 1.01203 1.16388 1.58861 1.62685 1.84133 2.02964 2.08659 2.20576 2.89108 2.94168 3.14597 3.36654 3.37358 3.40703 3.68676 3.74319 3.78725 3.81351 3.85715 3.91997 4.16114 4.17456 4.24949 4.35487 4.41752 4.42612 4.48945 4.56822 4.59261 4.63245 4.70579 4.72862 4.76432 4.76790 4.79730 4.81926 4.85619 4.86409 4.91640 4.98636 5.07198 5.11498 5.20231 5.26487 5.47006 5.63645 5.76105 6.32459 6.47640 6.56317 7.05568 Molecular weight = 309.20amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.003205 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.522650 B = 8733.081581 C = 9542.836700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.087 3.913 3 C -0.233 4.233 4 C -0.047 4.047 5 O -0.551 6.551 6 Si 0.739 3.261 7 C -0.077 4.077 8 C -0.087 4.087 9 C -0.077 4.077 10 C 0.591 3.409 11 O -0.568 6.568 12 N -0.697 5.697 13 C 0.091 3.909 14 H 0.068 0.932 15 C -0.152 4.152 16 C -0.119 4.119 17 H 0.133 0.867 18 C 0.008 3.992 19 N -0.373 5.373 20 H 0.435 0.565 21 C -0.055 4.055 22 C -0.047 4.047 23 C -0.125 4.125 24 N -0.510 5.510 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.379 0.621 30 H -0.292 1.292 31 H -0.312 1.312 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.298 -35.259 7.831 36.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C -0.239 4.239 4 C -0.157 4.157 5 O -0.358 6.358 6 Si 0.646 3.354 7 C -0.086 4.086 8 C -0.144 4.144 9 C -0.189 4.189 10 C 0.380 3.620 11 O -0.446 6.446 12 N -0.349 5.349 13 C -0.014 4.014 14 H 0.087 0.913 15 C -0.190 4.190 16 C -0.137 4.137 17 H 0.150 0.850 18 C -0.114 4.114 19 N 0.052 4.948 20 H 0.271 0.729 21 C -0.197 4.197 22 C -0.189 4.189 23 C -0.163 4.163 24 N -0.110 5.110 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.228 0.772 30 H -0.219 1.219 31 H -0.241 1.241 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.105 0.895 47 H 0.130 0.870 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.959 -34.743 7.744 35.609 hybrid contribution 1.174 0.869 0.694 1.617 sum 0.215 -33.874 8.438 34.910 Atomic orbital electron populations 1.20795 0.84409 1.03492 1.05555 1.20578 0.94974 0.84931 1.02801 1.19678 0.92957 0.95582 1.15654 1.24505 0.99023 0.86802 1.05324 1.86545 1.56885 1.58339 1.34009 0.94501 0.81695 0.80814 0.78437 1.19911 0.94978 0.92089 1.01577 1.20277 0.94229 0.98228 1.01629 1.19874 0.84059 0.93369 1.21585 1.17101 0.86715 0.82593 0.75602 1.90863 1.26044 1.75971 1.51751 1.45261 1.10290 1.03979 1.75360 1.22037 0.88670 0.91017 0.99705 0.91327 1.23675 1.01916 0.96743 0.96671 1.23069 1.01886 0.91879 0.96847 0.84954 1.23921 1.04603 0.98399 0.84452 1.44811 1.15804 1.17659 1.16574 0.72859 1.24220 0.76371 1.09347 1.09773 1.24126 1.04453 0.83449 1.06840 1.23282 1.04206 0.92403 0.96441 1.41531 1.03588 1.09049 1.56797 0.86407 0.86512 0.89586 0.86860 0.77208 1.21894 1.24129 0.92058 0.92526 0.91511 0.75065 0.87219 0.90671 0.83652 0.84241 0.85667 0.85855 0.85728 0.85929 0.85730 0.85971 0.89520 0.86964 0.72116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 2.70 9.45 71.24 0.67 3.38 16 2 C 0.09 -2.01 6.81 41.34 0.28 -1.73 16 3 C -0.23 3.40 5.31 -20.12 -0.11 3.29 16 4 C -0.05 0.59 3.05 71.23 0.22 0.81 16 5 O -0.55 4.10 10.27 -148.98 -1.53 2.57 16 6 Si 0.74 -10.89 27.78 68.60 1.91 -8.99 16 7 C -0.08 0.84 6.16 -19.57 -0.12 0.72 16 8 C -0.09 0.58 8.61 71.23 0.61 1.19 16 9 C -0.08 1.35 7.06 40.35 0.28 1.64 16 10 C 0.59 -10.65 7.79 86.45 0.67 -9.98 16 11 O -0.57 4.18 14.40 -4.34 -0.06 4.12 16 12 N -0.70 21.88 5.26 -444.00 -2.33 19.54 16 13 C 0.09 -3.14 4.32 45.52 0.20 -2.94 16 14 H 0.07 -1.68 7.46 -2.39 -0.02 -1.69 16 15 C -0.15 6.76 7.43 31.12 0.23 6.99 16 16 C -0.12 6.49 3.45 -10.27 -0.04 6.45 16 17 H 0.13 -7.81 6.10 -2.39 -0.01 -7.82 16 18 C 0.01 -0.51 4.48 86.30 0.39 -0.13 16 19 N -0.37 25.03 0.66 -948.89 -0.62 24.40 16 20 H 0.44 -30.12 8.44 -89.69 -0.76 -30.88 16 21 C -0.06 3.61 8.98 127.69 1.15 4.76 16 22 C -0.05 3.03 9.19 127.69 1.17 4.20 16 23 C -0.12 5.58 7.39 31.12 0.23 5.81 16 24 N -0.51 13.73 5.99 -171.92 -1.03 12.70 16 25 H 0.12 -3.92 8.14 -2.38 -0.02 -3.94 16 26 H 0.12 -4.32 8.14 -2.39 -0.02 -4.34 16 27 H 0.09 -2.50 2.76 -2.39 -0.01 -2.51 16 28 H 0.11 -1.48 7.96 -2.38 -0.02 -1.50 16 29 H 0.38 -4.48 8.56 -74.06 -0.63 -5.11 16 30 H -0.29 2.92 7.11 99.48 0.71 3.62 16 31 H -0.31 1.42 7.11 99.48 0.71 2.13 16 32 H 0.06 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.06 -0.18 6.48 -2.39 -0.02 -0.20 16 34 H 0.07 -0.31 6.77 -2.39 -0.02 -0.32 16 35 H 0.41 -16.46 7.83 -92.71 -0.73 -17.19 16 36 H 0.11 -5.00 7.90 -2.39 -0.02 -5.01 16 37 H 0.07 -3.15 8.14 -2.39 -0.02 -3.17 16 38 H 0.15 -9.32 8.09 -2.38 -0.02 -9.34 16 39 H 0.14 -8.77 7.79 -2.39 -0.02 -8.79 16 40 H 0.12 -8.10 8.14 -2.39 -0.02 -8.12 16 41 H 0.12 -8.09 6.10 -2.39 -0.01 -8.10 16 42 H 0.12 -8.09 8.11 -2.39 -0.02 -8.11 16 43 H 0.12 -7.81 8.11 -2.39 -0.02 -7.83 16 44 H 0.12 -7.96 8.14 -2.39 -0.02 -7.98 16 45 H 0.12 -7.81 8.14 -2.39 -0.02 -7.83 16 46 H 0.09 -3.77 8.14 -2.39 -0.02 -3.79 16 47 H 0.11 -5.04 8.10 -2.39 -0.02 -5.06 16 48 H 0.44 -16.25 8.19 -92.71 -0.76 -17.01 16 Total: 1.00 -91.87 367.93 0.33 -91.54 By element: Atomic # 1 Polarization: -168.50 SS G_CDS: -1.84 Total: -170.34 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 5.84 Total: 24.46 kcal Atomic # 7 Polarization: 60.64 SS G_CDS: -3.99 Total: 56.65 kcal Atomic # 8 Polarization: 8.28 SS G_CDS: -1.59 Total: 6.68 kcal Atomic # 14 Polarization: -10.89 SS G_CDS: 1.91 Total: -8.99 kcal Total: -91.87 0.33 -91.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.659 kcal (2) G-P(sol) polarization free energy of solvation -91.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds