Wall clock time and date at job start Sun Mar 7 2021 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00911 * 109.46675 * 2 1 4 4 C 1.46891 * 109.47410 * 120.00041 * 2 1 3 5 5 C 1.46898 * 109.47220 * 240.00653 * 2 1 3 6 6 C 1.52998 * 109.47179 * 174.99812 * 5 2 1 7 7 H 1.09001 * 112.85201 * 316.19114 * 6 5 2 8 8 C 1.54055 * 113.69569 * 87.46599 * 6 5 2 9 9 C 1.53776 * 86.98296 * 139.98874 * 8 6 5 10 10 H 1.09010 * 113.61227 * 219.97520 * 9 8 6 11 11 N 1.46501 * 113.61464 * 89.16545 * 9 8 6 12 12 C 1.34775 * 120.00270 * 105.85794 * 11 9 8 13 13 O 1.21586 * 120.00262 * 0.02562 * 12 11 9 14 14 C 1.47578 * 119.99834 * 179.97438 * 12 11 9 15 15 C 1.40208 * 119.83442 * 0.02562 * 14 12 11 16 16 C 1.36230 * 120.37521 * 179.97438 * 15 14 12 17 17 C 1.39873 * 119.96333 * 359.73713 * 16 15 14 18 18 C 1.46255 * 133.83776 * 179.61561 * 17 16 15 19 19 C 1.50694 * 126.48514 * 0.69256 * 18 17 16 20 20 O 1.42901 * 109.47118 * 74.70946 * 19 18 17 21 21 Si 1.86298 * 109.47775 * 194.71190 * 19 18 17 22 22 C 1.34456 * 107.03420 * 180.43254 * 18 17 16 23 23 N 1.36564 * 109.98668 * 0.22778 * 22 18 17 24 24 C 1.37832 * 109.85597 * 0.02562 * 23 22 18 25 25 C 1.38645 * 133.37632 * 179.97438 * 24 23 22 26 26 C 1.53777 * 87.17777 * 334.56834 * 9 8 6 27 27 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47157 * 299.99335 * 1 2 3 29 29 H 1.09000 * 109.47587 * 59.99613 * 1 2 3 30 30 H 1.09005 * 109.47022 * 59.99823 * 4 2 1 31 31 H 1.08997 * 109.47507 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47470 * 300.00432 * 4 2 1 33 33 H 1.09002 * 109.47019 * 54.99375 * 5 2 1 34 34 H 1.09001 * 109.46815 * 294.99756 * 5 2 1 35 35 H 1.08998 * 113.61387 * 25.48389 * 8 6 5 36 36 H 1.09000 * 113.68838 * 254.50379 * 8 6 5 37 37 H 0.97003 * 119.99699 * 285.85916 * 11 9 8 38 38 H 1.07993 * 119.80518 * 0.02562 * 15 14 12 39 39 H 1.08009 * 120.01408 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.47407 * 314.71302 * 19 18 17 41 41 H 0.96708 * 114.00246 * 180.02562 * 20 19 18 42 42 H 1.48506 * 109.99834 * 300.00486 * 21 19 18 43 43 H 1.48502 * 110.00011 * 61.31751 * 21 19 18 44 44 H 1.08002 * 125.00599 * 180.23107 * 22 18 17 45 45 H 0.96996 * 125.06718 * 180.02562 * 23 22 18 46 46 H 1.07998 * 120.16963 * 0.02562 * 25 24 23 47 47 H 1.08999 * 113.61664 * 140.02245 * 26 9 8 48 48 H 1.08996 * 113.61380 * 270.92905 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9514 0.0000 4 6 1.9587 -0.6924 1.1993 5 6 1.9587 -0.6923 -1.1995 6 6 3.4835 -0.5843 -1.2639 7 1 3.8473 0.4158 -1.0286 8 6 4.2163 -1.7033 -0.4996 9 6 5.2171 -1.7336 -1.6667 10 1 5.5316 -2.7393 -1.9462 11 7 6.3432 -0.8117 -1.4983 12 6 7.5630 -1.2888 -1.1806 13 8 7.7291 -2.4843 -1.0342 14 6 8.6974 -0.3601 -1.0114 15 6 8.5021 1.0179 -1.1815 16 6 9.5414 1.8851 -1.0276 17 6 10.8105 1.4020 -0.6925 18 6 12.1084 2.0367 -0.4647 19 6 12.4086 3.5119 -0.5322 20 8 11.8859 4.1580 0.6303 21 14 14.2523 3.7678 -0.6087 22 6 12.9818 1.0555 -0.1781 23 7 12.3505 -0.1551 -0.2088 24 6 11.0201 0.0186 -0.5245 25 6 9.9570 -0.8571 -0.6837 26 6 4.0890 -1.1735 -2.5489 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.5954 -1.7202 1.1993 31 1 3.0487 -0.6929 1.1991 32 1 1.5954 -0.1787 2.0894 33 1 1.5240 -0.2328 -2.0872 34 1 1.6704 -1.7426 -1.1559 35 1 3.6330 -2.6188 -0.4007 36 1 4.6545 -1.3754 0.4430 37 1 6.2108 0.1420 -1.6154 38 1 7.5220 1.3938 -1.4353 39 1 9.3843 2.9455 -1.1596 40 1 11.9456 3.9366 -1.4230 41 1 12.0425 5.1120 0.6541 42 1 14.8954 3.1931 0.6002 43 1 14.8037 3.1277 -1.8300 44 1 14.0285 1.2030 0.0437 45 1 12.7750 -1.0096 -0.0344 46 1 10.1042 -1.9189 -0.5527 47 1 4.4245 -0.4182 -3.2596 48 1 3.4710 -1.9444 -3.0092 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:43 Heat of formation + Delta-G solvation = 127.752456 kcal Electronic energy + Delta-G solvation = -27964.036938 eV Core-core repulsion = 24105.349190 eV Total energy + Delta-G solvation = -3858.687749 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.62211 -42.24876 -41.02896 -39.20863 -37.85765 -37.51004 -34.63943 -33.46673 -31.05470 -30.86775 -29.85744 -29.48249 -26.71427 -26.55447 -26.01513 -24.93028 -23.75576 -23.62675 -21.79261 -20.75647 -20.59904 -19.44308 -19.04488 -18.43592 -18.25450 -17.82856 -17.44769 -17.34166 -16.97605 -16.24465 -16.08005 -15.78618 -15.49431 -15.34661 -15.11525 -15.06293 -14.88065 -14.77287 -14.61514 -14.04594 -13.88854 -13.74044 -13.54840 -13.52908 -13.32042 -13.27674 -13.05454 -12.81622 -12.68185 -12.61441 -12.21424 -12.14090 -11.98212 -11.68644 -11.34927 -11.22333 -10.91885 -10.20784 -10.19486 -9.49959 -8.95639 -4.96079 -0.45674 0.27991 1.05371 1.17917 1.33785 1.65772 1.75483 1.80096 1.97375 2.10467 2.76748 2.89403 2.98025 3.21679 3.35574 3.44650 3.47701 3.52888 3.61929 3.67851 3.76352 3.79300 3.98415 4.01745 4.04289 4.17662 4.20061 4.21961 4.26991 4.35394 4.38460 4.42271 4.46534 4.54171 4.68333 4.72574 4.73148 4.78540 4.80242 4.85882 4.86858 4.89632 4.95164 5.03632 5.09597 5.14500 5.29750 5.37832 5.48600 5.52583 5.85505 6.29402 6.39393 6.98858 7.08930 Molecular weight = 331.18amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002379 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.422764 B =11765.029438 C =12637.306816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.368 5.368 3 H 0.439 0.561 4 C -0.058 4.058 5 C 0.009 3.991 6 C -0.117 4.117 7 H 0.133 0.867 8 C -0.152 4.152 9 C 0.088 3.912 10 H 0.067 0.933 11 N -0.690 5.690 12 C 0.565 3.435 13 O -0.583 6.583 14 C -0.132 4.132 15 C -0.099 4.099 16 C -0.076 4.076 17 C -0.083 4.083 18 C -0.186 4.186 19 C -0.034 4.034 20 O -0.565 6.565 21 Si 0.767 3.233 22 C 0.060 3.940 23 N -0.583 5.583 24 C 0.064 3.936 25 C -0.075 4.075 26 C -0.125 4.125 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.401 0.599 42 H -0.295 1.295 43 H -0.295 1.295 44 H 0.178 0.822 45 H 0.431 0.569 46 H 0.124 0.876 47 H 0.087 0.913 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.890 5.002 1.202 33.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.055 4.945 3 H 0.277 0.723 4 C -0.200 4.200 5 C -0.113 4.113 6 C -0.136 4.136 7 H 0.151 0.849 8 C -0.191 4.191 9 C -0.017 4.017 10 H 0.085 0.915 11 N -0.343 5.343 12 C 0.354 3.646 13 O -0.464 6.464 14 C -0.136 4.136 15 C -0.118 4.118 16 C -0.094 4.094 17 C -0.088 4.088 18 C -0.193 4.193 19 C -0.145 4.145 20 O -0.375 6.375 21 Si 0.673 3.327 22 C -0.069 4.069 23 N -0.186 5.186 24 C -0.042 4.042 25 C -0.097 4.097 26 C -0.163 4.163 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.257 0.743 38 H 0.189 0.811 39 H 0.170 0.830 40 H 0.108 0.892 41 H 0.252 0.748 42 H -0.222 1.222 43 H -0.223 1.223 44 H 0.195 0.805 45 H 0.271 0.729 46 H 0.142 0.858 47 H 0.106 0.894 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -32.230 2.814 1.447 32.385 hybrid contribution 0.960 -0.780 0.065 1.239 sum -31.270 2.034 1.512 31.373 Atomic orbital electron populations 1.24122 0.75496 1.09394 1.09792 1.44815 1.15950 1.19289 1.14399 0.72329 1.24262 1.05561 1.02648 0.87530 1.23925 0.95180 1.03530 0.88690 1.23051 0.92655 1.00883 0.96969 0.84913 1.23841 0.97293 1.00381 0.97548 1.22079 0.85988 0.93944 0.99684 0.91454 1.45341 1.07069 1.11511 1.70353 1.18228 0.83684 0.86995 0.75685 1.90808 1.84957 1.18027 1.52581 1.19556 0.92550 0.94594 1.06897 1.20968 1.00539 0.90087 1.00239 1.20533 0.89732 1.01393 0.97761 1.19559 0.94837 0.91408 1.02982 1.20096 0.92491 0.94471 1.12291 1.23969 1.10689 0.88485 0.91325 1.86465 1.81978 1.27279 1.41774 0.94099 0.72678 0.89945 0.75978 1.21979 0.98810 0.84434 1.01676 1.41777 1.07115 1.09246 1.60470 1.18301 0.85454 0.95296 1.05172 1.20170 0.90524 0.98803 1.00163 1.23268 0.95083 1.01739 0.96256 0.86508 0.85761 0.85332 0.86275 0.86673 0.85478 0.83068 0.84715 0.87181 0.90334 0.74256 0.81107 0.83032 0.89172 0.74791 1.22209 1.22278 0.80512 0.72916 0.85844 0.89434 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.96 9.19 127.69 1.17 4.13 16 2 N -0.37 24.32 0.66 -948.87 -0.62 23.70 16 3 H 0.44 -30.89 8.41 -89.68 -0.75 -31.65 16 4 C -0.06 3.52 8.57 127.69 1.09 4.62 16 5 C 0.01 -0.53 4.57 86.30 0.39 -0.14 16 6 C -0.12 6.26 3.19 -10.17 -0.03 6.23 16 7 H 0.13 -7.60 8.10 -2.39 -0.02 -7.62 16 8 C -0.15 6.66 5.71 31.21 0.18 6.83 16 9 C 0.09 -2.94 4.29 45.51 0.20 -2.75 16 10 H 0.07 -1.60 7.50 -2.38 -0.02 -1.62 16 11 N -0.69 20.31 5.21 -443.16 -2.31 18.00 16 12 C 0.57 -9.49 7.76 86.71 0.67 -8.82 16 13 O -0.58 3.81 15.93 -3.99 -0.06 3.75 16 14 C -0.13 2.06 5.87 -20.07 -0.12 1.95 16 15 C -0.10 2.16 9.46 22.28 0.21 2.37 16 16 C -0.08 1.28 10.03 22.20 0.22 1.51 16 17 C -0.08 0.83 6.35 -20.14 -0.13 0.71 16 18 C -0.19 1.76 5.60 -18.65 -0.10 1.66 16 19 C -0.03 0.50 3.05 71.23 0.22 0.72 16 20 O -0.57 8.38 12.86 -148.98 -1.92 6.47 16 21 Si 0.77 -11.71 30.79 68.60 2.11 -9.59 16 22 C 0.06 -0.59 10.43 83.09 0.87 0.28 16 23 N -0.58 6.35 6.07 -187.71 -1.14 5.21 16 24 C 0.06 -0.59 7.26 38.95 0.28 -0.31 16 25 C -0.08 0.77 9.61 22.63 0.22 0.98 16 26 C -0.12 5.44 7.38 31.12 0.23 5.67 16 27 H 0.12 -7.27 8.14 -2.39 -0.02 -7.29 16 28 H 0.12 -7.85 8.14 -2.39 -0.02 -7.87 16 29 H 0.13 -8.26 8.11 -2.39 -0.02 -8.28 16 30 H 0.12 -7.14 8.11 -2.38 -0.02 -7.16 16 31 H 0.11 -6.71 5.13 -2.39 -0.01 -6.72 16 32 H 0.13 -7.79 8.14 -2.39 -0.02 -7.81 16 33 H 0.15 -9.69 8.09 -2.39 -0.02 -9.71 16 34 H 0.13 -8.26 7.80 -2.39 -0.02 -8.28 16 35 H 0.11 -4.95 7.91 -2.39 -0.02 -4.97 16 36 H 0.08 -3.26 7.19 -2.39 -0.02 -3.27 16 37 H 0.42 -15.46 6.69 -92.71 -0.62 -16.08 16 38 H 0.17 -5.60 6.36 -2.91 -0.02 -5.62 16 39 H 0.15 -3.25 8.06 -2.91 -0.02 -3.27 16 40 H 0.09 -1.70 7.96 -2.38 -0.02 -1.72 16 41 H 0.40 -10.05 8.74 -74.05 -0.65 -10.70 16 42 H -0.29 2.50 7.04 99.48 0.70 3.20 16 43 H -0.30 2.57 7.11 99.48 0.71 3.28 16 44 H 0.18 -2.21 6.30 -2.91 -0.02 -2.23 16 45 H 0.43 -6.84 8.96 -92.71 -0.83 -7.67 16 46 H 0.12 -1.07 7.62 -2.91 -0.02 -1.09 16 47 H 0.09 -3.68 8.14 -2.39 -0.02 -3.70 16 48 H 0.11 -4.98 8.10 -2.39 -0.02 -4.99 16 Total: 1.00 -89.51 381.72 -0.17 -89.68 By element: Atomic # 1 Polarization: -161.05 SS G_CDS: -1.81 Total: -162.85 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 5.57 Total: 25.64 kcal Atomic # 7 Polarization: 50.98 SS G_CDS: -4.07 Total: 46.91 kcal Atomic # 8 Polarization: 12.20 SS G_CDS: -1.98 Total: 10.22 kcal Atomic # 14 Polarization: -11.71 SS G_CDS: 2.11 Total: -9.59 kcal Total: -89.51 -0.17 -89.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.434 kcal (2) G-P(sol) polarization free energy of solvation -89.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds