Wall clock time and date at job start Sun Mar 7 2021 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 H 1.00896 * 109.47548 * 2 1 4 4 C 1.46895 * 109.47323 * 120.00135 * 2 1 3 5 5 C 1.46903 * 109.46825 * 240.00305 * 2 1 3 6 6 C 1.53000 * 109.47341 * 64.99803 * 5 2 1 7 7 H 1.09000 * 112.84499 * 43.80494 * 6 5 2 8 8 C 1.53778 * 113.61539 * 174.99960 * 6 5 2 9 9 C 1.53782 * 87.07939 * 139.98042 * 8 6 5 10 10 H 1.08999 * 113.61506 * 220.01409 * 9 8 6 11 11 N 1.46508 * 113.61025 * 89.20537 * 9 8 6 12 12 C 1.34771 * 119.99813 * 155.00038 * 11 9 8 13 13 O 1.21289 * 120.00168 * 359.97438 * 12 11 9 14 14 C 1.50697 * 119.99760 * 179.97438 * 12 11 9 15 15 N 1.46504 * 109.47215 * 180.02562 * 14 12 11 16 16 C 1.35043 * 125.93362 * 125.00058 * 15 14 12 17 17 C 1.35085 * 107.97966 * 180.02562 * 16 15 14 18 18 C 1.50694 * 126.07670 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47256 * 105.13472 * 18 17 16 20 20 Si 1.86305 * 109.47080 * 345.13977 * 18 17 16 21 21 C 1.40846 * 107.84597 * 359.97438 * 17 16 15 22 22 C 1.48422 * 126.03475 * 180.02562 * 21 17 16 23 23 C 1.39328 * 120.11937 * 317.19384 * 22 21 17 24 24 C 1.38025 * 119.87575 * 179.76305 * 23 22 21 25 25 C 1.38320 * 120.12409 * 0.49309 * 24 23 22 26 26 C 1.38321 * 120.23701 * 359.78346 * 25 24 23 27 27 C 1.38025 * 120.11987 * 359.95706 * 26 25 24 28 28 N 1.31612 * 107.92834 * 359.72323 * 21 17 16 29 29 C 1.53775 * 87.08458 * 334.56843 * 9 8 6 30 30 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46736 * 300.00235 * 1 2 3 32 32 H 1.08997 * 109.46832 * 59.99328 * 1 2 3 33 33 H 1.08996 * 109.47390 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47257 * 299.99815 * 4 2 1 35 35 H 1.09006 * 109.47359 * 60.00071 * 4 2 1 36 36 H 1.08994 * 109.46996 * 185.00148 * 5 2 1 37 37 H 1.09008 * 109.46774 * 304.99912 * 5 2 1 38 38 H 1.09002 * 113.61808 * 254.53368 * 8 6 5 39 39 H 1.09001 * 113.61464 * 25.35317 * 8 6 5 40 40 H 0.96993 * 119.99775 * 334.99330 * 11 9 8 41 41 H 1.08998 * 109.47231 * 299.99924 * 14 12 11 42 42 H 1.08997 * 109.47257 * 60.00120 * 14 12 11 43 43 H 1.07994 * 126.00667 * 0.02562 * 16 15 14 44 44 H 1.08997 * 109.47380 * 225.14261 * 18 17 16 45 45 H 0.96695 * 114.00366 * 300.00309 * 19 18 17 46 46 H 1.48492 * 109.99930 * 180.02562 * 20 18 17 47 47 H 1.48506 * 109.99585 * 301.31956 * 20 18 17 48 48 H 1.07995 * 120.05945 * 359.97438 * 23 22 21 49 49 H 1.08001 * 119.94109 * 180.27323 * 24 23 22 50 50 H 1.07995 * 119.88442 * 179.76499 * 25 24 23 51 51 H 1.07996 * 119.94281 * 179.97438 * 26 25 24 52 52 H 1.08003 * 120.05977 * 180.02562 * 27 26 25 53 53 H 1.09002 * 113.61428 * 270.88383 * 29 9 8 54 54 H 1.08999 * 113.61628 * 139.97801 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9586 -0.6925 -1.1995 6 6 1.5538 0.0977 -2.4456 7 1 1.7119 1.1706 -2.3361 8 6 2.1233 -0.4787 -3.7525 9 6 0.7620 -0.1611 -4.3936 10 1 0.4112 -0.9329 -5.0786 11 7 0.6825 1.1856 -4.9651 12 6 -0.1880 1.4447 -5.9608 13 8 -0.9053 0.5629 -6.3840 14 6 -0.2702 2.8300 -6.5483 15 7 -1.2839 2.8527 -7.6057 16 6 -2.3398 3.6919 -7.6735 17 6 -3.0361 3.3965 -8.7927 18 6 -4.2905 4.0850 -9.2650 19 8 -3.9787 4.9403 -10.3664 20 14 -5.0037 5.0989 -7.8741 21 6 -2.3805 2.3314 -9.4404 22 6 -2.8036 1.6880 -10.7092 23 6 -4.1479 1.3971 -10.9313 24 6 -4.5364 0.8032 -12.1151 25 6 -3.5927 0.4874 -13.0758 26 6 -2.2560 0.7687 -12.8580 27 6 -1.8572 1.3674 -11.6801 28 7 -1.3228 2.0118 -8.7253 29 6 0.1605 -0.2700 -2.9825 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.0487 -0.6929 1.1991 34 1 1.5955 -0.1787 2.0894 35 1 1.5954 -1.7202 1.1994 36 1 3.0449 -0.7707 -1.1559 37 1 1.5239 -1.6911 -1.2454 38 1 2.9468 0.1044 -4.1647 39 1 2.3444 -1.5448 -3.6998 40 1 1.2563 1.8906 -4.6268 41 1 -0.5439 3.5400 -5.7678 42 1 0.6979 3.1052 -6.9667 43 1 -2.5843 4.4635 -6.9586 44 1 -5.0186 3.3376 -9.5801 45 1 -3.3352 5.6313 -10.1580 46 1 -6.2417 5.7825 -8.3270 47 1 -5.3027 4.2257 -6.7107 48 1 -4.8850 1.6391 -10.1800 49 1 -5.5788 0.5813 -12.2902 50 1 -3.9005 0.0193 -13.9990 51 1 -1.5232 0.5197 -13.6112 52 1 -0.8133 1.5869 -11.5112 53 1 -0.1563 -1.2793 -2.7197 54 1 -0.6005 0.4817 -2.7731 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:30:38 Heat of formation + Delta-G solvation = 178.186277 kcal Electronic energy + Delta-G solvation = -33619.010606 eV Core-core repulsion = 29257.782543 eV Total energy + Delta-G solvation = -4361.228063 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.207 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.54220 -42.26029 -40.89722 -39.87846 -39.07601 -37.69185 -34.91908 -34.49395 -32.37070 -32.02933 -31.47134 -30.28051 -29.52098 -28.64505 -26.73514 -26.19818 -25.74741 -24.41321 -23.70848 -23.51039 -22.19900 -21.54182 -21.03662 -20.64226 -19.11923 -18.76032 -18.50757 -17.82390 -17.70699 -17.39395 -17.29811 -16.81597 -16.52691 -16.32259 -16.22071 -15.78468 -15.65778 -15.49186 -15.26441 -15.11050 -14.83730 -14.42187 -14.35385 -14.23364 -14.08850 -13.99115 -13.79239 -13.72030 -13.58032 -13.55220 -13.31289 -13.27748 -13.06577 -12.75611 -12.52746 -12.45262 -12.20320 -12.17076 -11.90835 -11.75973 -11.69911 -11.39139 -11.32689 -10.66772 -10.25318 -10.17232 -9.96206 -9.80804 -9.34972 -5.05230 0.03993 0.37886 0.78687 1.02960 1.27439 1.38629 1.42403 1.59128 1.71688 2.02538 2.04033 2.80904 2.86716 2.94991 3.19131 3.30130 3.34002 3.44946 3.55299 3.62442 3.69397 3.74115 3.76810 3.90474 3.93947 3.99100 4.01733 4.12541 4.14859 4.17356 4.19210 4.19962 4.33161 4.40037 4.40274 4.46143 4.49240 4.50913 4.68821 4.69890 4.72700 4.75945 4.77725 4.80302 4.83189 4.87850 4.91654 4.93177 5.00693 5.01866 5.11706 5.22705 5.46793 5.49776 5.49961 5.53781 5.91684 5.95235 6.41596 6.55264 6.88410 7.14914 Molecular weight = 372.21amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.002031 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.072458 B =13784.111122 C =15212.771243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.366 5.366 3 H 0.440 0.560 4 C -0.047 4.047 5 C 0.007 3.993 6 C -0.112 4.112 7 H 0.140 0.860 8 C -0.128 4.128 9 C 0.092 3.908 10 H 0.055 0.945 11 N -0.692 5.692 12 C 0.496 3.504 13 O -0.569 6.569 14 C 0.107 3.893 15 N -0.359 5.359 16 C 0.083 3.917 17 C -0.271 4.271 18 C -0.050 4.050 19 O -0.561 6.561 20 Si 0.808 3.192 21 C 0.107 3.893 22 C -0.026 4.026 23 C -0.109 4.109 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.109 4.109 28 N -0.294 5.294 29 C -0.151 4.151 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.424 0.576 41 H 0.187 0.813 42 H 0.140 0.860 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.391 0.609 46 H -0.310 1.310 47 H -0.277 1.277 48 H 0.123 0.877 49 H 0.142 0.858 50 H 0.144 0.856 51 H 0.143 0.857 52 H 0.121 0.879 53 H 0.102 0.898 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.395 -1.932 39.838 44.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 N 0.057 4.943 3 H 0.278 0.722 4 C -0.189 4.189 5 C -0.115 4.115 6 C -0.130 4.130 7 H 0.158 0.842 8 C -0.167 4.167 9 C -0.014 4.014 10 H 0.074 0.926 11 N -0.347 5.347 12 C 0.281 3.719 13 O -0.445 6.445 14 C -0.017 4.017 15 N -0.141 5.141 16 C -0.062 4.062 17 C -0.282 4.282 18 C -0.159 4.159 19 O -0.368 6.368 20 Si 0.713 3.287 21 C -0.058 4.058 22 C -0.028 4.028 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.128 4.128 28 N -0.115 5.115 29 C -0.189 4.189 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.263 0.737 41 H 0.204 0.796 42 H 0.158 0.842 43 H 0.249 0.751 44 H 0.106 0.894 45 H 0.241 0.759 46 H -0.238 1.238 47 H -0.204 1.204 48 H 0.141 0.859 49 H 0.160 0.840 50 H 0.162 0.838 51 H 0.160 0.840 52 H 0.139 0.861 53 H 0.120 0.880 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.873 -3.839 40.033 44.425 hybrid contribution -0.679 -0.040 -1.137 1.324 sum 18.194 -3.878 38.896 43.116 Atomic orbital electron populations 1.24269 0.76819 1.09358 1.09518 1.44797 1.15452 1.19569 1.14509 0.72195 1.24121 1.05839 1.02217 0.86696 1.23921 1.06097 0.99334 0.82169 1.22990 0.95191 1.02397 0.92455 0.84200 1.23264 0.95444 1.03566 0.94414 1.21952 0.99713 0.84290 0.95448 0.92646 1.45329 1.40265 1.12719 1.36394 1.21113 0.80193 0.90786 0.79815 1.90871 1.44157 1.48540 1.60978 1.22088 0.93673 0.96306 0.89588 1.48177 1.21799 1.25955 1.18198 1.22880 0.87851 0.96682 0.98767 1.20646 1.03959 1.03789 0.99836 1.24816 0.95822 0.96559 0.98697 1.86501 1.66329 1.46771 1.37182 0.94176 0.81147 0.79753 0.73634 1.20741 0.94102 0.96144 0.94806 1.17994 0.93717 0.99449 0.91601 1.21235 0.94631 0.98875 0.98095 1.21378 1.00900 0.98720 0.93460 1.21562 0.93100 0.99244 0.99977 1.21390 0.96989 0.98689 0.97288 1.21275 0.99046 0.98662 0.93827 1.77678 1.21030 1.15263 0.97540 1.23762 0.97244 1.03879 0.94010 0.86640 0.85338 0.86344 0.85386 0.85597 0.86717 0.83236 0.85151 0.89393 0.87765 0.73711 0.79559 0.84208 0.75085 0.89398 0.75934 1.23812 1.20356 0.85872 0.84014 0.83810 0.83953 0.86103 0.88007 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.62 8.57 127.69 1.09 4.71 16 2 N -0.37 24.85 0.66 -948.84 -0.62 24.23 16 3 H 0.44 -31.97 8.40 -89.70 -0.75 -32.72 16 4 C -0.05 3.05 9.19 127.69 1.17 4.22 16 5 C 0.01 -0.43 4.57 86.30 0.39 -0.04 16 6 C -0.11 6.25 3.19 -10.27 -0.03 6.21 16 7 H 0.14 -8.53 8.09 -2.39 -0.02 -8.55 16 8 C -0.13 5.75 7.39 31.12 0.23 5.98 16 9 C 0.09 -3.26 4.32 45.51 0.20 -3.07 16 10 H 0.06 -1.30 7.46 -2.39 -0.02 -1.31 16 11 N -0.69 24.48 5.27 -440.03 -2.32 22.17 16 12 C 0.50 -11.69 7.86 87.66 0.69 -11.00 16 13 O -0.57 4.81 15.32 -3.06 -0.05 4.77 16 14 C 0.11 -3.08 6.99 85.63 0.60 -2.48 16 15 N -0.36 5.80 3.40 -351.92 -1.19 4.60 16 16 C 0.08 -1.57 9.96 83.47 0.83 -0.74 16 17 C -0.27 2.83 5.35 -19.95 -0.11 2.72 16 18 C -0.05 0.53 2.51 71.23 0.18 0.71 16 19 O -0.56 4.86 12.88 -148.98 -1.92 2.94 16 20 Si 0.81 -13.63 30.74 68.60 2.11 -11.52 16 21 C 0.11 -0.36 6.67 42.53 0.28 -0.08 16 22 C -0.03 0.02 5.74 -20.04 -0.12 -0.09 16 23 C -0.11 0.25 8.89 22.48 0.20 0.45 16 24 C -0.13 0.57 10.03 22.24 0.22 0.79 16 25 C -0.12 0.65 10.04 22.31 0.22 0.87 16 26 C -0.13 0.58 10.03 22.24 0.22 0.80 16 27 C -0.11 0.21 9.78 22.48 0.22 0.43 16 28 N -0.29 1.31 11.69 -48.16 -0.56 0.75 16 29 C -0.15 6.93 5.70 31.12 0.18 7.11 16 30 H 0.11 -7.05 8.11 -2.39 -0.02 -7.07 16 31 H 0.13 -8.16 8.14 -2.39 -0.02 -8.18 16 32 H 0.12 -7.25 5.13 -2.39 -0.01 -7.27 16 33 H 0.13 -8.35 8.11 -2.39 -0.02 -8.37 16 34 H 0.13 -8.12 8.14 -2.39 -0.02 -8.14 16 35 H 0.11 -7.21 8.14 -2.38 -0.02 -7.23 16 36 H 0.15 -9.71 8.09 -2.39 -0.02 -9.73 16 37 H 0.13 -8.04 7.79 -2.38 -0.02 -8.06 16 38 H 0.09 -3.83 8.14 -2.39 -0.02 -3.85 16 39 H 0.10 -4.57 8.10 -2.39 -0.02 -4.59 16 40 H 0.42 -18.97 8.70 -92.71 -0.81 -19.78 16 41 H 0.19 -7.68 8.07 -2.39 -0.02 -7.70 16 42 H 0.14 -4.58 8.14 -2.39 -0.02 -4.60 16 43 H 0.23 -7.16 6.40 -2.91 -0.02 -7.18 16 44 H 0.09 -0.61 5.56 -2.39 -0.01 -0.62 16 45 H 0.39 -6.99 8.70 -74.06 -0.64 -7.63 16 46 H -0.31 2.23 7.11 99.48 0.71 2.93 16 47 H -0.28 3.80 7.11 99.48 0.71 4.51 16 48 H 0.12 -0.53 6.21 -2.91 -0.02 -0.54 16 49 H 0.14 -1.25 8.06 -2.91 -0.02 -1.27 16 50 H 0.14 -1.44 8.06 -2.91 -0.02 -1.46 16 51 H 0.14 -1.29 8.06 -2.91 -0.02 -1.32 16 52 H 0.12 -0.36 8.06 -2.91 -0.02 -0.39 16 53 H 0.10 -4.64 7.90 -2.39 -0.02 -4.66 16 54 H 0.08 -3.85 7.18 -2.39 -0.02 -3.87 16 Total: 1.00 -104.08 431.88 0.89 -103.19 By element: Atomic # 1 Polarization: -167.40 SS G_CDS: -1.23 Total: -168.64 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.68 Total: 17.52 kcal Atomic # 7 Polarization: 56.45 SS G_CDS: -4.70 Total: 51.75 kcal Atomic # 8 Polarization: 9.67 SS G_CDS: -1.97 Total: 7.70 kcal Atomic # 14 Polarization: -13.63 SS G_CDS: 2.11 Total: -11.52 kcal Total: -104.08 0.89 -103.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 281.376 kcal (2) G-P(sol) polarization free energy of solvation -104.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds