Wall clock time and date at job start Sun Mar 7 2021 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39287 * 121.02863 * 2 1 4 4 C 1.46497 * 134.20337 * 359.94379 * 3 2 1 5 5 C 1.50703 * 126.59638 * 0.26101 * 4 3 2 6 6 O 1.42901 * 109.46913 * 284.99995 * 5 4 3 7 7 Si 1.86300 * 109.46881 * 165.00205 * 5 4 3 8 8 C 1.34183 * 106.80157 * 180.28408 * 4 3 2 9 9 N 1.36950 * 109.95053 * 359.97438 * 8 4 3 10 10 C 1.37153 * 110.11625 * 0.02562 * 9 8 4 11 11 N 1.32815 * 132.96795 * 179.97438 * 10 9 8 12 12 C 1.31306 * 121.89391 * 180.02562 * 11 10 9 13 13 C 1.39747 * 121.02902 * 179.77644 * 2 1 3 14 14 C 1.47661 * 120.45739 * 359.97438 * 13 2 1 15 15 O 1.21578 * 119.99727 * 353.71005 * 14 13 2 16 16 N 1.34777 * 120.00056 * 173.70529 * 14 13 2 17 17 C 1.46502 * 119.99845 * 180.02562 * 16 14 13 18 18 H 1.09001 * 112.85076 * 23.80857 * 17 16 14 19 19 C 1.53782 * 113.61102 * 155.00155 * 17 16 14 20 20 C 1.53776 * 87.08187 * 89.20006 * 19 17 16 21 21 H 1.08997 * 113.61946 * 270.88424 * 20 19 17 22 22 C 1.52998 * 113.61389 * 139.97859 * 20 19 17 23 23 N 1.46905 * 109.47177 * 175.00324 * 22 20 19 24 24 H 1.00900 * 109.47281 * 54.99520 * 23 22 20 25 25 C 1.46899 * 109.47116 * 175.00332 * 23 22 20 26 26 C 1.46897 * 109.46875 * 295.00012 * 23 22 20 27 27 C 1.53779 * 113.69131 * 252.53679 * 17 16 14 28 28 H 1.09003 * 109.46888 * 263.92508 * 1 2 3 29 29 H 1.08996 * 109.46870 * 23.92461 * 1 2 3 30 30 H 1.08993 * 109.47047 * 143.92876 * 1 2 3 31 31 H 1.08994 * 109.47066 * 45.00155 * 5 4 3 32 32 H 0.96696 * 113.99416 * 179.97438 * 6 5 4 33 33 H 1.48500 * 110.00107 * 59.99891 * 7 5 4 34 34 H 1.48501 * 109.99981 * 181.31979 * 7 5 4 35 35 H 1.07998 * 125.01789 * 179.97438 * 8 4 3 36 36 H 0.97001 * 124.93820 * 180.02562 * 9 8 4 37 37 H 1.07997 * 119.31279 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00170 * 0.02562 * 16 14 13 39 39 H 1.09001 * 113.61294 * 203.75105 * 19 17 16 40 40 H 1.08997 * 113.61476 * 334.64951 * 19 17 16 41 41 H 1.09003 * 109.47261 * 295.00188 * 22 20 19 42 42 H 1.09002 * 109.47129 * 55.00060 * 22 20 19 43 43 H 1.09000 * 109.47317 * 59.99572 * 25 23 22 44 44 H 1.09003 * 109.46748 * 179.97438 * 25 23 22 45 45 H 1.08998 * 109.46946 * 299.99470 * 25 23 22 46 46 H 1.09010 * 109.47055 * 300.00000 * 26 23 22 47 47 H 1.09000 * 109.47526 * 59.99711 * 26 23 22 48 48 H 1.09001 * 109.47354 * 180.02562 * 26 23 22 49 49 H 1.09000 * 113.61181 * 25.42110 * 27 17 16 50 50 H 1.09000 * 113.61312 * 156.24121 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1936 0.0000 4 6 1.8516 2.6101 -0.0010 5 6 0.4526 3.1705 0.0030 6 8 -0.1238 3.0217 -1.2961 7 14 0.5087 4.9771 0.4544 8 6 2.9948 3.3126 -0.0068 9 7 4.0669 2.4605 -0.0089 10 6 3.6348 1.1588 -0.0051 11 7 4.2720 -0.0066 -0.0056 12 6 3.6266 -1.1501 -0.0018 13 6 2.2274 -1.1975 0.0047 14 6 1.5225 -2.4950 0.0103 15 8 0.3128 -2.5290 0.1263 16 7 2.2202 -3.6415 -0.1132 17 6 1.5208 -4.9287 -0.1082 18 1 0.4770 -4.8445 -0.4108 19 6 2.2847 -6.0477 -0.8357 20 6 2.9625 -6.3527 0.5105 21 1 3.8776 -5.7846 0.6773 22 6 3.1310 -7.8480 0.7869 23 7 3.8902 -8.0335 2.0309 24 1 3.4348 -7.5346 2.7804 25 6 3.9494 -9.4640 2.3597 26 6 5.2532 -7.5148 1.8546 27 6 1.7242 -5.7375 1.1839 28 1 -0.3633 -0.1088 1.0219 29 1 -0.3633 0.9393 -0.4167 30 1 -0.3633 -0.8306 -0.6050 31 1 -0.1522 2.6323 0.7327 32 1 -1.0264 3.3613 -1.3670 33 1 1.3305 5.7221 -0.5330 34 1 -0.8674 5.5339 0.4930 35 1 3.0598 4.3907 -0.0094 36 1 4.9966 2.7373 -0.0126 37 1 4.1869 -2.0734 -0.0019 38 1 3.1854 -3.6144 -0.2054 39 1 1.6431 -6.8528 -1.1939 40 1 2.9727 -5.6823 -1.5981 41 1 2.1497 -8.3118 0.8876 42 1 3.6691 -8.3119 -0.0398 43 1 4.4413 -10.0029 1.5499 44 1 4.5131 -9.6016 3.2824 45 1 2.9380 -9.8489 2.4905 46 1 5.7452 -8.0538 1.0448 47 1 5.2093 -6.4534 1.6105 48 1 5.8167 -7.6528 2.7774 49 1 1.9599 -5.1217 2.0518 50 1 0.9288 -6.4568 1.3785 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:30:54 Heat of formation + Delta-G solvation = 141.955610 kcal Electronic energy + Delta-G solvation = -30671.594214 eV Core-core repulsion = 26592.558830 eV Total energy + Delta-G solvation = -4079.035384 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.89534 -42.18356 -41.05800 -39.41964 -38.57471 -37.89308 -35.24584 -34.58880 -32.10878 -31.28249 -29.88634 -29.35516 -28.90036 -26.81886 -26.57466 -25.85486 -24.83361 -24.18605 -23.45785 -22.12912 -20.48245 -20.41492 -19.40321 -19.20559 -18.73297 -18.54128 -17.75136 -17.55116 -17.31070 -17.03894 -16.72103 -16.45824 -15.92797 -15.87358 -15.51900 -15.19232 -15.12423 -14.91559 -14.75408 -14.25410 -14.13321 -13.97947 -13.78249 -13.73083 -13.61077 -13.49101 -13.44590 -13.31943 -13.20929 -13.12558 -12.97775 -12.79021 -12.72154 -12.06624 -11.97973 -11.64798 -11.30981 -11.22872 -11.15862 -10.56749 -10.32211 -10.15113 -9.64510 -9.18794 -4.91929 -0.39099 -0.09940 1.05833 1.27986 1.34689 1.57493 1.66098 1.74856 1.96216 2.00053 2.72206 2.94159 2.99495 3.20856 3.27372 3.31647 3.43291 3.47337 3.54854 3.63360 3.67169 3.74519 3.79942 3.84060 3.93143 4.07700 4.13071 4.21599 4.28223 4.29702 4.39791 4.40531 4.48431 4.53882 4.54592 4.64679 4.69645 4.70836 4.77818 4.79764 4.86304 4.87017 4.90020 4.95103 5.01575 5.07150 5.11767 5.19990 5.23907 5.35445 5.58386 5.68479 6.17083 6.43250 6.58380 6.78829 7.15600 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002343 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.296603 B =11946.644557 C =12747.861039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 C -0.170 4.170 4 C -0.160 4.160 5 C -0.054 4.054 6 O -0.558 6.558 7 Si 0.768 3.232 8 C 0.084 3.916 9 N -0.561 5.561 10 C 0.291 3.709 11 N -0.515 5.515 12 C 0.185 3.815 13 C -0.244 4.244 14 C 0.574 3.426 15 O -0.565 6.565 16 N -0.695 5.695 17 C 0.093 3.907 18 H 0.071 0.929 19 C -0.127 4.127 20 C -0.121 4.121 21 H 0.132 0.868 22 C 0.008 3.992 23 N -0.372 5.372 24 H 0.436 0.564 25 C -0.046 4.046 26 C -0.056 4.056 27 C -0.150 4.150 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.392 0.608 33 H -0.282 1.282 34 H -0.293 1.293 35 H 0.210 0.790 36 H 0.439 0.561 37 H 0.207 0.793 38 H 0.415 0.585 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.077 0.923 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.249 -30.746 10.205 34.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 C -0.178 4.178 4 C -0.167 4.167 5 C -0.163 4.163 6 O -0.367 6.367 7 Si 0.671 3.329 8 C -0.043 4.043 9 N -0.167 5.167 10 C 0.057 3.943 11 N -0.229 5.229 12 C 0.016 3.984 13 C -0.252 4.252 14 C 0.363 3.637 15 O -0.445 6.445 16 N -0.347 5.347 17 C -0.013 4.013 18 H 0.089 0.911 19 C -0.166 4.166 20 C -0.139 4.139 21 H 0.150 0.850 22 C -0.114 4.114 23 N 0.051 4.949 24 H 0.272 0.728 25 C -0.188 4.188 26 C -0.198 4.198 27 C -0.189 4.189 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.242 0.758 33 H -0.208 1.208 34 H -0.220 1.220 35 H 0.227 0.773 36 H 0.280 0.720 37 H 0.223 0.777 38 H 0.253 0.747 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.096 0.904 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.966 -30.212 9.713 34.281 hybrid contribution -1.490 0.555 -0.916 1.835 sum 11.476 -29.657 8.797 32.994 Atomic orbital electron populations 1.21086 0.89592 1.03804 1.03293 1.20087 0.97061 0.90313 0.87152 1.19748 0.93534 0.94207 1.10269 1.19702 0.94158 0.90546 1.12286 1.24348 0.91772 1.12618 0.87530 1.86585 1.34873 1.84239 1.31043 0.94243 0.80352 0.71124 0.87151 1.22190 0.84441 0.97069 1.00630 1.41589 1.10413 1.02075 1.62648 1.18723 0.89339 0.86799 0.99403 1.66517 1.40847 0.96375 1.19130 1.23087 0.89468 0.95315 0.90531 1.20549 0.95566 0.93383 1.15664 1.17876 0.86295 0.84050 0.75518 1.90776 1.15402 1.87476 1.50850 1.45329 1.11035 1.04226 1.74139 1.22019 0.97342 0.82306 0.99589 0.91092 1.23290 0.99424 0.97298 0.96585 1.23088 0.99553 0.94339 0.96967 0.84991 1.23924 1.01764 0.98331 0.87345 1.44812 1.16121 1.16727 1.17191 0.72786 1.24122 1.09513 0.77509 1.07684 1.24220 0.80737 1.05399 1.09402 1.23667 0.98664 0.99626 0.96899 0.90093 0.90620 0.90013 0.89886 0.75754 1.20819 1.22048 0.77318 0.72024 0.77689 0.74663 0.86996 0.89738 0.84124 0.83850 0.86096 0.85744 0.85838 0.85859 0.85837 0.85657 0.90403 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.08 8.45 71.24 0.60 1.68 16 2 C 0.06 -0.59 5.98 -19.25 -0.12 -0.71 16 3 C -0.17 1.51 6.16 -20.19 -0.12 1.39 16 4 C -0.16 1.78 5.61 -18.63 -0.10 1.67 16 5 C -0.05 0.70 1.87 71.24 0.13 0.84 16 6 O -0.56 5.46 11.62 -148.98 -1.73 3.73 16 7 Si 0.77 -11.93 30.80 68.60 2.11 -9.82 16 8 C 0.08 -1.29 10.44 82.97 0.87 -0.42 16 9 N -0.56 8.66 6.04 -192.25 -1.16 7.50 16 10 C 0.29 -3.17 8.42 134.03 1.13 -2.04 16 11 N -0.52 7.02 10.37 -191.75 -1.99 5.03 16 12 C 0.18 -3.69 10.67 85.20 0.91 -2.78 16 13 C -0.24 3.78 5.89 -19.99 -0.12 3.66 16 14 C 0.57 -10.34 7.72 86.73 0.67 -9.67 16 15 O -0.57 5.34 13.10 -3.96 -0.05 5.29 16 16 N -0.69 21.06 5.22 -443.07 -2.31 18.74 16 17 C 0.09 -3.16 4.32 45.52 0.20 -2.97 16 18 H 0.07 -1.77 7.46 -2.39 -0.02 -1.79 16 19 C -0.13 5.55 7.39 31.12 0.23 5.78 16 20 C -0.12 6.49 3.45 -10.27 -0.04 6.46 16 21 H 0.13 -7.56 6.10 -2.39 -0.01 -7.57 16 22 C 0.01 -0.51 4.48 86.30 0.39 -0.12 16 23 N -0.37 24.62 0.66 -948.82 -0.62 23.99 16 24 H 0.44 -29.82 8.44 -89.69 -0.76 -30.57 16 25 C -0.05 2.96 9.19 127.69 1.17 4.14 16 26 C -0.06 3.55 8.97 127.69 1.15 4.69 16 27 C -0.15 6.66 7.43 31.12 0.23 6.89 16 28 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.08 -0.64 4.80 -2.39 -0.01 -0.65 16 30 H 0.08 -0.49 5.97 -2.39 -0.01 -0.50 16 31 H 0.08 -1.25 7.15 -2.39 -0.02 -1.26 16 32 H 0.39 -6.66 8.74 -74.06 -0.65 -7.30 16 33 H -0.28 2.98 7.04 99.48 0.70 3.69 16 34 H -0.29 2.77 7.11 99.48 0.71 3.48 16 35 H 0.21 -4.48 6.31 -2.91 -0.02 -4.50 16 36 H 0.44 -9.17 8.96 -92.71 -0.83 -10.00 16 37 H 0.21 -6.58 6.43 -2.91 -0.02 -6.60 16 38 H 0.41 -15.63 6.78 -92.71 -0.63 -16.26 16 39 H 0.11 -4.93 8.10 -2.39 -0.02 -4.95 16 40 H 0.08 -3.52 8.14 -2.39 -0.02 -3.54 16 41 H 0.14 -8.75 7.79 -2.39 -0.02 -8.77 16 42 H 0.14 -9.01 8.09 -2.39 -0.02 -9.03 16 43 H 0.12 -7.60 8.14 -2.39 -0.02 -7.62 16 44 H 0.12 -7.85 8.14 -2.39 -0.02 -7.87 16 45 H 0.12 -7.80 8.11 -2.39 -0.02 -7.82 16 46 H 0.12 -7.79 8.11 -2.38 -0.02 -7.81 16 47 H 0.12 -7.86 6.10 -2.39 -0.01 -7.87 16 48 H 0.12 -7.93 8.14 -2.39 -0.02 -7.94 16 49 H 0.08 -3.27 8.14 -2.39 -0.02 -3.29 16 50 H 0.11 -5.03 7.90 -2.39 -0.02 -5.05 16 Total: 1.00 -88.85 388.59 -0.39 -89.25 By element: Atomic # 1 Polarization: -160.39 SS G_CDS: -1.81 Total: -162.20 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 7.17 Total: 18.48 kcal Atomic # 7 Polarization: 61.35 SS G_CDS: -6.08 Total: 55.27 kcal Atomic # 8 Polarization: 10.80 SS G_CDS: -1.78 Total: 9.02 kcal Atomic # 14 Polarization: -11.93 SS G_CDS: 2.11 Total: -9.82 kcal Total: -88.85 -0.39 -89.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.204 kcal (2) G-P(sol) polarization free energy of solvation -88.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds