Wall clock time and date at job start Sun Mar 7 2021 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 H 1.00898 * 109.47274 * 2 1 4 4 C 1.46896 * 109.46879 * 119.99918 * 2 1 3 5 5 C 1.46903 * 109.47159 * 239.99724 * 2 1 3 6 6 C 1.52999 * 109.47060 * 174.99810 * 5 2 1 7 7 H 1.08998 * 112.84915 * 43.80668 * 6 5 2 8 8 C 1.53783 * 113.61565 * 174.99797 * 6 5 2 9 9 C 1.53774 * 87.08009 * 140.06599 * 8 6 5 10 10 H 1.09003 * 113.62039 * 219.93554 * 9 8 6 11 11 N 1.46506 * 113.61122 * 89.12149 * 9 8 6 12 12 C 1.34780 * 120.00007 * 156.52938 * 11 9 8 13 13 O 1.21571 * 119.99968 * 359.97438 * 12 11 9 14 14 C 1.47720 * 119.99654 * 179.97438 * 12 11 9 15 15 C 1.39709 * 120.02134 * 179.97438 * 14 12 11 16 16 C 1.37666 * 119.97559 * 180.02562 * 15 14 12 17 17 C 1.39503 * 120.02396 * 0.02562 * 16 15 14 18 18 C 1.48272 * 119.97447 * 179.97438 * 17 16 15 19 19 C 1.39400 * 120.12510 * 179.97438 * 18 17 16 20 20 C 1.38004 * 119.86767 * 179.69636 * 19 18 17 21 21 C 1.38333 * 120.13170 * 0.26363 * 20 19 18 22 22 C 1.50691 * 119.87274 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47211 * 65.00273 * 22 21 20 24 24 Si 1.86300 * 109.47171 * 184.99687 * 22 21 20 25 25 C 1.38339 * 120.25314 * 359.97438 * 21 20 19 26 26 C 1.37998 * 120.12498 * 359.97438 * 25 21 20 27 27 C 1.39505 * 120.04716 * 0.25628 * 17 16 15 28 28 C 1.37666 * 120.02249 * 359.48306 * 27 17 16 29 29 C 1.53780 * 87.17827 * 334.52835 * 9 8 6 30 30 H 1.09006 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47274 * 300.00022 * 1 2 3 32 32 H 1.09003 * 109.47294 * 60.00565 * 1 2 3 33 33 H 1.09000 * 109.47504 * 60.00309 * 4 2 1 34 34 H 1.09005 * 109.46827 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47216 * 300.00095 * 4 2 1 36 36 H 1.08998 * 109.47245 * 55.00237 * 5 2 1 37 37 H 1.09004 * 109.47237 * 295.00365 * 5 2 1 38 38 H 1.09008 * 113.60965 * 25.52086 * 8 6 5 39 39 H 1.08998 * 113.69605 * 254.63332 * 8 6 5 40 40 H 0.96998 * 119.99531 * 336.52185 * 11 9 8 41 41 H 1.08007 * 120.01196 * 359.97438 * 15 14 12 42 42 H 1.07997 * 119.98563 * 180.02562 * 16 15 14 43 43 H 1.08002 * 120.06765 * 359.97438 * 19 18 17 44 44 H 1.07999 * 119.93347 * 180.27637 * 20 19 18 45 45 H 1.08994 * 109.47784 * 304.99911 * 22 21 20 46 46 H 0.96702 * 113.99781 * 59.99333 * 23 22 21 47 47 H 1.48509 * 109.99819 * 58.68527 * 24 22 21 48 48 H 1.48498 * 110.00243 * 180.02562 * 24 22 21 49 49 H 1.07994 * 119.93313 * 180.02562 * 25 21 20 50 50 H 1.08003 * 120.06095 * 180.02562 * 26 25 21 51 51 H 1.07999 * 119.98452 * 179.74552 * 27 17 16 52 52 H 1.08008 * 120.00675 * 180.27690 * 28 27 17 53 53 H 1.08996 * 113.61771 * 140.01601 * 29 9 8 54 54 H 1.08995 * 113.61470 * 270.92956 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9587 -0.6926 -1.1994 6 6 3.4835 -0.5845 -1.2639 7 1 3.9616 -0.7638 -0.3009 8 6 4.1092 -1.3822 -2.4202 9 6 5.0681 -0.1960 -2.6154 10 1 5.2622 0.0412 -3.6614 11 7 6.2930 -0.2942 -1.8177 12 6 7.4025 0.3673 -2.2023 13 8 7.3870 1.0451 -3.2114 14 6 8.6374 0.2687 -1.3976 15 6 9.7880 0.9537 -1.7961 16 6 10.9384 0.8607 -1.0458 17 6 10.9558 0.0824 0.1118 18 6 12.1956 -0.0174 0.9189 19 6 12.2163 -0.7938 2.0764 20 6 13.3750 -0.8880 2.8202 21 6 14.5128 -0.2096 2.4220 22 6 15.7750 -0.3170 3.2381 23 8 16.2531 -1.6633 3.2011 24 14 17.0699 0.8212 2.5321 25 6 14.4967 0.5664 1.2768 26 6 13.3442 0.6672 0.5246 27 6 9.8092 -0.6067 0.5075 28 6 8.6561 -0.5108 -0.2385 29 6 3.9846 0.6872 -1.9743 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.5953 -1.7202 1.1995 34 1 3.0486 -0.6929 1.1992 35 1 1.5952 -0.1787 2.0894 36 1 1.5241 -0.2331 -2.0872 37 1 1.6702 -1.7429 -1.1558 38 1 3.4316 -1.5386 -3.2596 39 1 4.6068 -2.2982 -2.1017 40 1 6.3054 -0.8352 -1.0127 41 1 9.7751 1.5554 -2.6930 42 1 11.8278 1.3905 -1.3534 43 1 11.3287 -1.3242 2.3882 44 1 13.3935 -1.4929 3.7147 45 1 15.5660 -0.0340 4.2697 46 1 16.4599 -1.9829 2.3122 47 1 16.5725 2.2205 2.5356 48 1 18.3199 0.7241 3.3278 49 1 15.3881 1.0935 0.9705 50 1 13.3329 1.2729 -0.3695 51 1 9.8249 -1.2123 1.4016 52 1 7.7672 -1.0409 0.0705 53 1 4.3816 1.4411 -1.2945 54 1 3.2731 1.0954 -2.6920 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13158362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:30:59 Heat of formation + Delta-G solvation = 121.811193 kcal Electronic energy + Delta-G solvation = -31717.094163 eV Core-core repulsion = 27511.584793 eV Total energy + Delta-G solvation = -4205.509370 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.201 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.24681 -41.44314 -40.78726 -39.65491 -38.81905 -37.53754 -34.86428 -33.87226 -32.59312 -31.61560 -31.00972 -29.92589 -29.37241 -27.12315 -26.86295 -25.86560 -24.70552 -24.67282 -23.64193 -22.61452 -22.48459 -21.42401 -20.49612 -19.44089 -19.14818 -18.46371 -17.86336 -17.66620 -17.35130 -17.10641 -16.84601 -16.37372 -16.21766 -16.17670 -15.95648 -15.51316 -15.38209 -15.16647 -15.01240 -14.94912 -14.83315 -14.33940 -14.30401 -14.08602 -13.99406 -13.75872 -13.62329 -13.55096 -13.47296 -13.24982 -13.20096 -13.12427 -12.84258 -12.75842 -12.57610 -12.16654 -12.03877 -11.98015 -11.71844 -11.63769 -11.34725 -11.18385 -10.80567 -10.45610 -10.18824 -10.09453 -9.98722 -9.10651 -5.05701 -0.72682 0.31880 0.37362 0.46531 1.03676 1.26578 1.57202 1.73383 1.92620 1.96844 2.57125 2.91699 2.96740 2.98168 3.17156 3.37289 3.39834 3.43337 3.50841 3.59883 3.63013 3.73307 3.76744 3.80617 3.84526 3.89488 3.97743 4.02381 4.19686 4.23581 4.25740 4.27714 4.34001 4.37971 4.44130 4.45307 4.51474 4.61186 4.64929 4.66216 4.73548 4.75817 4.80999 4.84779 4.86884 4.88326 4.88541 4.95521 5.02362 5.05454 5.09760 5.14693 5.17890 5.22511 5.38916 5.47708 5.51225 5.62390 5.76589 5.90275 6.39203 6.71830 7.09608 Molecular weight = 368.20amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.001540 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.873341 B =18175.652839 C =19256.620223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.373 5.373 3 H 0.435 0.565 4 C -0.055 4.055 5 C 0.008 3.992 6 C -0.119 4.119 7 H 0.133 0.867 8 C -0.125 4.125 9 C 0.089 3.911 10 H 0.067 0.933 11 N -0.692 5.692 12 C 0.559 3.441 13 O -0.582 6.582 14 C -0.154 4.154 15 C -0.075 4.075 16 C -0.127 4.127 17 C -0.022 4.022 18 C -0.062 4.062 19 C -0.104 4.104 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.070 4.070 23 O -0.555 6.555 24 Si 0.764 3.236 25 C -0.121 4.121 26 C -0.109 4.109 27 C -0.121 4.121 28 C -0.067 4.067 29 C -0.152 4.152 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.417 0.583 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.132 0.868 45 H 0.108 0.892 46 H 0.395 0.605 47 H -0.287 1.287 48 H -0.305 1.305 49 H 0.142 0.858 50 H 0.144 0.856 51 H 0.158 0.842 52 H 0.170 0.830 53 H 0.075 0.925 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.450 -4.478 1.329 39.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.051 4.949 3 H 0.271 0.729 4 C -0.197 4.197 5 C -0.114 4.114 6 C -0.137 4.137 7 H 0.150 0.850 8 C -0.163 4.163 9 C -0.017 4.017 10 H 0.086 0.914 11 N -0.345 5.345 12 C 0.348 3.652 13 O -0.463 6.463 14 C -0.157 4.157 15 C -0.094 4.094 16 C -0.145 4.145 17 C -0.022 4.022 18 C -0.062 4.062 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.181 4.181 23 O -0.363 6.363 24 Si 0.672 3.328 25 C -0.138 4.138 26 C -0.127 4.127 27 C -0.138 4.138 28 C -0.085 4.085 29 C -0.190 4.190 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.256 0.744 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.170 0.830 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.245 0.755 47 H -0.214 1.214 48 H -0.233 1.233 49 H 0.159 0.841 50 H 0.162 0.838 51 H 0.175 0.825 52 H 0.187 0.813 53 H 0.094 0.906 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -39.168 -3.547 1.394 39.353 hybrid contribution 0.531 0.401 0.404 0.778 sum -38.637 -3.147 1.797 38.807 Atomic orbital electron populations 1.24129 0.75514 1.09611 1.09603 1.44817 1.15993 1.19302 1.14786 0.72866 1.24223 1.05856 1.02705 0.86966 1.23923 0.95120 1.03768 0.88549 1.23119 0.93616 0.96286 1.00724 0.84978 1.23273 0.97108 0.96625 0.99330 1.22057 0.83902 1.00013 0.95706 0.91444 1.45369 1.09886 1.49988 1.29261 1.18467 0.84115 0.78728 0.83872 1.90814 1.85212 1.42433 1.27809 1.20005 0.94013 1.03353 0.98335 1.21258 0.92111 0.96998 0.98986 1.21376 0.98765 0.99647 0.94728 1.19146 0.93242 0.96017 0.93834 1.18969 0.93001 0.98678 0.95533 1.21522 0.98919 0.98015 0.93711 1.21128 0.92086 0.98634 1.00257 1.20506 0.96467 0.98614 0.96407 1.25070 0.98344 0.91653 1.03004 1.86483 1.86638 1.27470 1.35696 0.93845 0.75055 0.76041 0.87882 1.21133 0.98889 0.99090 0.94675 1.21486 0.91998 0.98941 1.00264 1.21517 0.91602 0.99509 1.01218 1.21466 0.99342 0.95755 0.91932 1.23721 0.97938 0.96782 1.00596 0.85992 0.85742 0.85860 0.85740 0.85860 0.85673 0.84178 0.83669 0.86920 0.89435 0.74374 0.85944 0.84249 0.83002 0.85048 0.87492 0.75475 1.21388 1.23313 0.84074 0.83842 0.82468 0.81253 0.90637 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.00 9.19 127.69 1.17 4.18 16 2 N -0.37 24.83 0.66 -948.85 -0.62 24.20 16 3 H 0.44 -29.87 8.44 -89.70 -0.76 -30.62 16 4 C -0.06 3.59 8.98 127.69 1.15 4.73 16 5 C 0.01 -0.52 4.48 86.30 0.39 -0.13 16 6 C -0.12 6.45 3.46 -10.17 -0.04 6.41 16 7 H 0.13 -7.66 6.10 -2.39 -0.01 -7.67 16 8 C -0.12 5.53 7.38 31.12 0.23 5.76 16 9 C 0.09 -3.02 4.30 45.51 0.20 -2.82 16 10 H 0.07 -1.64 7.50 -2.39 -0.02 -1.66 16 11 N -0.69 21.38 5.21 -443.01 -2.31 19.07 16 12 C 0.56 -10.40 7.77 86.75 0.67 -9.73 16 13 O -0.58 4.52 15.95 -3.94 -0.06 4.46 16 14 C -0.15 2.94 5.88 -20.06 -0.12 2.82 16 15 C -0.07 1.08 9.58 22.49 0.22 1.29 16 16 C -0.13 2.02 9.41 22.44 0.21 2.23 16 17 C -0.02 0.38 5.88 -20.00 -0.12 0.27 16 18 C -0.06 0.96 5.88 -20.05 -0.12 0.85 16 19 C -0.10 1.75 9.43 22.49 0.21 1.96 16 20 C -0.10 1.44 9.67 22.24 0.21 1.66 16 21 C -0.12 1.55 5.36 -19.82 -0.11 1.45 16 22 C -0.07 0.84 2.80 71.23 0.20 1.04 16 23 O -0.55 6.04 12.83 -148.98 -1.91 4.13 16 24 Si 0.76 -9.22 29.79 68.60 2.04 -7.18 16 25 C -0.12 1.73 8.65 22.24 0.19 1.92 16 26 C -0.11 1.64 9.43 22.49 0.21 1.85 16 27 C -0.12 2.77 9.41 22.44 0.21 2.98 16 28 C -0.07 1.74 9.52 22.49 0.21 1.95 16 29 C -0.15 6.70 7.45 31.21 0.23 6.93 16 30 H 0.12 -7.74 8.14 -2.38 -0.02 -7.76 16 31 H 0.12 -7.90 8.14 -2.39 -0.02 -7.92 16 32 H 0.12 -7.83 8.11 -2.39 -0.02 -7.85 16 33 H 0.12 -7.98 8.11 -2.39 -0.02 -8.00 16 34 H 0.12 -7.95 6.10 -2.38 -0.01 -7.96 16 35 H 0.12 -8.00 8.14 -2.39 -0.02 -8.02 16 36 H 0.14 -8.77 7.80 -2.39 -0.02 -8.79 16 37 H 0.15 -9.24 8.09 -2.38 -0.02 -9.26 16 38 H 0.11 -5.04 8.10 -2.38 -0.02 -5.06 16 39 H 0.09 -3.76 8.14 -2.39 -0.02 -3.78 16 40 H 0.42 -16.20 6.72 -92.71 -0.62 -16.82 16 41 H 0.12 -1.44 7.64 -2.91 -0.02 -1.46 16 42 H 0.14 -2.49 6.19 -2.91 -0.02 -2.50 16 43 H 0.15 -3.46 6.19 -2.91 -0.02 -3.47 16 44 H 0.13 -1.95 8.06 -2.91 -0.02 -1.97 16 45 H 0.11 -1.16 7.96 -2.39 -0.02 -1.18 16 46 H 0.40 -7.40 8.70 -74.06 -0.64 -8.04 16 47 H -0.29 2.08 7.11 99.48 0.71 2.79 16 48 H -0.30 1.01 7.11 99.48 0.71 1.72 16 49 H 0.14 -2.47 4.89 -2.91 -0.01 -2.49 16 50 H 0.14 -2.63 6.19 -2.91 -0.02 -2.65 16 51 H 0.16 -4.40 6.19 -2.91 -0.02 -4.42 16 52 H 0.17 -6.17 6.39 -2.91 -0.02 -6.19 16 53 H 0.07 -3.12 8.14 -2.39 -0.02 -3.14 16 54 H 0.11 -4.97 7.91 -2.39 -0.02 -4.99 16 Total: 1.00 -88.42 424.63 1.52 -86.90 By element: Atomic # 1 Polarization: -168.14 SS G_CDS: -1.04 Total: -169.18 kcal Atomic # 6 Polarization: 32.17 SS G_CDS: 5.43 Total: 37.59 kcal Atomic # 7 Polarization: 46.21 SS G_CDS: -2.93 Total: 43.28 kcal Atomic # 8 Polarization: 10.56 SS G_CDS: -1.97 Total: 8.58 kcal Atomic # 14 Polarization: -9.22 SS G_CDS: 2.04 Total: -7.18 kcal Total: -88.42 1.52 -86.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13158362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.710 kcal (2) G-P(sol) polarization free energy of solvation -88.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds