Wall clock time and date at job start Sun Mar 7 2021 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 H 1.00896 * 109.47467 * 2 1 4 4 C 1.46903 * 109.47035 * 119.99487 * 2 1 3 5 5 C 1.46897 * 109.47520 * 239.99139 * 2 1 3 6 6 C 1.52995 * 109.47440 * 175.00027 * 5 2 1 7 7 H 1.09004 * 112.90780 * 43.75051 * 6 5 2 8 8 C 1.53777 * 113.61632 * 175.00453 * 6 5 2 9 9 C 1.53777 * 87.08489 * 139.98276 * 8 6 5 10 10 H 1.09002 * 113.62060 * 219.93972 * 9 8 6 11 11 N 1.46501 * 113.61581 * 89.11357 * 9 8 6 12 12 C 1.34774 * 119.99924 * 155.00431 * 11 9 8 13 13 O 1.21586 * 120.00451 * 0.02562 * 12 11 9 14 14 C 1.47569 * 120.00162 * 180.02562 * 12 11 9 15 15 C 1.40204 * 120.12460 * 179.97438 * 14 12 11 16 16 O 1.35651 * 120.00541 * 359.97438 * 15 14 12 17 17 C 1.38825 * 119.99740 * 180.02562 * 15 14 12 18 18 C 1.37771 * 120.24142 * 0.02562 * 17 15 14 19 19 C 1.39847 * 120.24739 * 359.97173 * 18 17 15 20 20 C 1.47813 * 120.00180 * 180.02562 * 19 18 17 21 21 C 1.35936 * 125.92889 * 0.02562 * 20 19 18 22 22 C 1.40969 * 106.74322 * 179.80617 * 21 20 19 23 23 C 1.34711 * 107.02431 * 0.34879 * 22 21 20 24 24 C 1.50699 * 125.66298 * 179.91419 * 23 22 21 25 25 O 1.42903 * 109.47152 * 299.71853 * 24 23 22 26 26 Si 1.86293 * 109.47431 * 179.71744 * 24 23 22 27 27 O 1.34334 * 108.67272 * 359.64466 * 23 22 21 28 28 C 1.39173 * 119.99710 * 0.30405 * 19 18 17 29 29 C 1.53784 * 87.08105 * 334.56688 * 9 8 6 30 30 H 1.09004 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47809 * 300.00505 * 1 2 3 32 32 H 1.09001 * 109.46874 * 60.00241 * 1 2 3 33 33 H 1.08996 * 109.47315 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47464 * 300.00201 * 4 2 1 35 35 H 1.09004 * 109.46954 * 60.00036 * 4 2 1 36 36 H 1.09007 * 109.46542 * 55.00725 * 5 2 1 37 37 H 1.08998 * 109.47349 * 295.00802 * 5 2 1 38 38 H 1.08995 * 113.61629 * 25.43229 * 8 6 5 39 39 H 1.08997 * 113.61436 * 254.52839 * 8 6 5 40 40 H 0.97001 * 120.00113 * 334.99932 * 11 9 8 41 41 H 0.96696 * 114.00130 * 270.02178 * 16 15 14 42 42 H 1.07998 * 119.88036 * 180.02562 * 17 15 14 43 43 H 1.08004 * 119.87464 * 180.02562 * 18 17 15 44 44 H 1.08002 * 126.63017 * 0.05434 * 21 20 19 45 45 H 1.08000 * 126.48713 * 180.23069 * 22 21 20 46 46 H 1.09008 * 109.47393 * 59.71247 * 24 23 22 47 47 H 0.96700 * 114.00311 * 180.02562 * 25 24 23 48 48 H 1.48506 * 109.99973 * 59.99460 * 26 24 23 49 49 H 1.48493 * 110.00375 * 181.31561 * 26 24 23 50 50 H 1.08000 * 120.11983 * 179.69968 * 28 19 18 51 51 H 1.08999 * 113.61355 * 139.97935 * 29 9 8 52 52 H 1.09001 * 113.61558 * 270.88192 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9586 -0.6924 1.1995 5 6 1.9587 -0.6926 -1.1993 6 6 3.4835 -0.5847 -1.2637 7 1 3.9625 -0.7628 -0.3009 8 6 4.1092 -1.3823 -2.4200 9 6 5.0667 -0.1952 -2.6167 10 1 5.2597 0.0415 -3.6630 11 7 6.2923 -0.2915 -1.8198 12 6 7.4095 0.3460 -2.2221 13 8 7.4002 1.0014 -3.2461 14 6 8.6441 0.2486 -1.4197 15 6 9.8080 0.9103 -1.8361 16 8 9.8007 1.6413 -2.9788 17 6 10.9681 0.8164 -1.0795 18 6 10.9816 0.0740 0.0810 19 6 9.8265 -0.5901 0.5058 20 6 9.8468 -1.3846 1.7521 21 6 10.9163 -1.5510 2.5746 22 6 10.4879 -2.3734 3.6364 23 6 9.1942 -2.6712 3.4074 24 6 8.3219 -3.5311 4.2853 25 8 8.8833 -4.8420 4.3769 26 14 6.6135 -3.6372 3.5499 27 8 8.8092 -2.0696 2.2696 28 6 8.6594 -0.5076 -0.2479 29 6 3.9817 0.6850 -1.9741 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.0485 -0.6928 1.1993 34 1 1.5952 -0.1785 2.0895 35 1 1.5952 -1.7201 1.1996 36 1 1.5241 -0.2331 -2.0871 37 1 1.6703 -1.7429 -1.1556 38 1 3.4313 -1.5400 -3.2588 39 1 4.6079 -2.2970 -2.0998 40 1 6.2996 -0.8140 -1.0025 41 1 10.0405 1.1383 -3.7690 42 1 11.8635 1.3272 -1.4018 43 1 11.8873 0.0054 0.6652 44 1 11.9024 -1.1308 2.4424 45 1 11.0845 -2.7038 4.4738 46 1 8.2623 -3.0910 5.2808 47 1 8.3726 -5.4510 4.9276 48 1 6.6812 -4.2355 2.1924 49 1 5.7348 -4.4564 4.4227 50 1 7.7676 -1.0236 0.0758 51 1 4.3775 1.4391 -1.2939 52 1 3.2689 1.0925 -2.6910 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:14 Heat of formation + Delta-G solvation = 75.910640 kcal Electronic energy + Delta-G solvation = -34506.381303 eV Core-core repulsion = 29945.280911 eV Total energy + Delta-G solvation = -4561.100392 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.185 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.73428 -42.23628 -41.52613 -40.18217 -38.82583 -38.15590 -37.85978 -34.77585 -34.18754 -32.86860 -32.36538 -30.20573 -29.93675 -29.32305 -26.84042 -26.38131 -26.09317 -25.28132 -23.92562 -23.39685 -22.95482 -21.92177 -21.23807 -20.49845 -19.63815 -19.28158 -19.00410 -18.80771 -17.97124 -17.64099 -17.32736 -17.14799 -17.09179 -16.71872 -16.46666 -16.29408 -15.97938 -15.83780 -15.60469 -15.37672 -14.98034 -14.62074 -14.51435 -14.32218 -14.06819 -14.02697 -13.99730 -13.71593 -13.62616 -13.49214 -13.44435 -13.21945 -13.18493 -13.14352 -13.07961 -12.81863 -12.78579 -12.07204 -12.01887 -11.92794 -11.67169 -11.32898 -11.11799 -10.97990 -10.74116 -10.45220 -10.35753 -10.07926 -8.93703 -5.00495 -0.61195 -0.24922 0.70282 1.07647 1.16710 1.36186 1.45934 1.72452 1.82497 1.94960 1.97654 2.57700 2.95504 3.00204 3.06785 3.16321 3.20588 3.40412 3.42964 3.46285 3.54899 3.62554 3.77254 3.81112 3.82287 3.92709 3.96562 4.02674 4.14561 4.23395 4.27396 4.30885 4.38047 4.42607 4.48829 4.54601 4.58091 4.64176 4.69546 4.75362 4.76634 4.79027 4.82872 4.85856 4.88925 4.92453 4.96351 4.98774 5.04954 5.11161 5.16597 5.18242 5.37437 5.44738 5.53632 5.93307 6.37679 6.49188 6.66378 7.10879 Molecular weight = 374.18amu Principal moments of inertia in cm(-1) A = 0.005813 B = 0.003734 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4815.652493 B = 7496.661936 C =11756.809453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 H 0.436 0.564 4 C -0.059 4.059 5 C 0.009 3.991 6 C -0.123 4.123 7 H 0.134 0.866 8 C -0.127 4.127 9 C 0.091 3.909 10 H 0.070 0.930 11 N -0.697 5.697 12 C 0.561 3.439 13 O -0.559 6.559 14 C -0.179 4.179 15 C 0.161 3.839 16 O -0.496 6.496 17 C -0.152 4.152 18 C -0.050 4.050 19 C -0.040 4.040 20 C 0.028 3.972 21 C -0.197 4.197 22 C -0.192 4.192 23 C -0.011 4.011 24 C -0.072 4.072 25 O -0.560 6.560 26 Si 0.810 3.190 27 O -0.163 6.163 28 C -0.042 4.042 29 C -0.150 4.150 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.414 0.586 41 H 0.410 0.590 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.153 0.847 46 H 0.116 0.884 47 H 0.405 0.595 48 H -0.294 1.294 49 H -0.270 1.270 50 H 0.164 0.836 51 H 0.076 0.924 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 1.429 3.919 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.051 4.949 3 H 0.272 0.728 4 C -0.201 4.201 5 C -0.113 4.113 6 C -0.141 4.141 7 H 0.151 0.849 8 C -0.166 4.166 9 C -0.014 4.014 10 H 0.089 0.911 11 N -0.350 5.350 12 C 0.349 3.651 13 O -0.437 6.437 14 C -0.182 4.182 15 C 0.115 3.885 16 O -0.310 6.310 17 C -0.170 4.170 18 C -0.068 4.068 19 C -0.040 4.040 20 C -0.021 4.021 21 C -0.215 4.215 22 C -0.211 4.211 23 C -0.061 4.061 24 C -0.178 4.178 25 O -0.372 6.372 26 Si 0.711 3.289 27 O -0.060 6.060 28 C -0.061 4.061 29 C -0.189 4.189 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.252 0.748 41 H 0.271 0.729 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.185 0.815 45 H 0.170 0.830 46 H 0.134 0.866 47 H 0.257 0.743 48 H -0.221 1.221 49 H -0.196 1.196 50 H 0.181 0.819 51 H 0.095 0.905 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -29.877 1.806 2.738 30.057 hybrid contribution 1.904 -1.290 0.456 2.344 sum -27.974 0.516 3.194 28.160 Atomic orbital electron populations 1.24121 0.75575 1.09546 1.09588 1.44812 1.15937 1.19362 1.14792 0.72769 1.24282 1.06104 1.02729 0.86992 1.23899 0.95007 1.03713 0.88649 1.23109 0.93754 0.96412 1.00802 0.84852 1.23291 0.97258 0.96623 0.99420 1.22043 0.83724 0.99874 0.95793 0.91122 1.45412 1.09612 1.51853 1.28120 1.18116 0.83737 0.78963 0.84281 1.90849 1.85045 1.41686 1.26150 1.20256 0.95066 1.03908 0.98998 1.18924 0.91778 0.89052 0.88785 1.84705 1.91824 1.37917 1.16559 1.21559 0.98500 1.00895 0.96089 1.21393 0.97907 0.92674 0.94831 1.17634 0.95314 0.99261 0.91784 1.20317 0.85978 0.99823 0.96014 1.22152 1.00743 1.03108 0.95535 1.21787 0.95453 1.01884 1.02016 1.21687 0.95803 1.00593 0.87995 1.24494 1.08085 0.83524 1.01676 1.86529 1.54124 1.21784 1.74804 0.93967 0.71513 0.87239 0.76142 1.83804 1.37403 1.52068 1.32766 1.21409 0.98309 0.94936 0.91401 1.23669 0.97863 0.96752 1.00589 0.86074 0.85650 0.85971 0.85587 0.85341 0.85779 0.84187 0.83805 0.86853 0.89869 0.74772 0.72942 0.82758 0.82670 0.81525 0.82973 0.86623 0.74300 1.22141 1.19602 0.81869 0.90485 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.98 9.19 127.69 1.17 4.16 16 2 N -0.37 24.82 0.66 -948.85 -0.62 24.19 16 3 H 0.44 -29.99 8.44 -89.70 -0.76 -30.75 16 4 C -0.06 3.84 8.98 127.69 1.15 4.99 16 5 C 0.01 -0.58 4.48 86.30 0.39 -0.19 16 6 C -0.12 6.53 3.45 -10.27 -0.04 6.50 16 7 H 0.13 -7.63 6.10 -2.39 -0.01 -7.64 16 8 C -0.13 5.50 7.39 31.12 0.23 5.73 16 9 C 0.09 -3.04 4.32 45.52 0.20 -2.84 16 10 H 0.07 -1.72 7.46 -2.39 -0.02 -1.73 16 11 N -0.70 20.53 5.21 -443.17 -2.31 18.22 16 12 C 0.56 -10.02 7.76 86.71 0.67 -9.34 16 13 O -0.56 4.67 14.74 17.00 0.25 4.92 16 14 C -0.18 3.18 5.88 -20.04 -0.12 3.06 16 15 C 0.16 -2.30 6.72 22.89 0.15 -2.14 16 16 O -0.50 5.54 11.55 -68.67 -0.79 4.75 16 17 C -0.15 2.59 9.96 22.30 0.22 2.81 16 18 C -0.05 0.93 9.54 22.55 0.22 1.15 16 19 C -0.04 0.74 5.87 -20.13 -0.12 0.62 16 20 C 0.03 -0.47 7.03 24.27 0.17 -0.30 16 21 C -0.20 2.94 10.26 22.40 0.23 3.17 16 22 C -0.19 2.57 10.77 22.13 0.24 2.80 16 23 C -0.01 0.18 6.25 24.88 0.16 0.33 16 24 C -0.07 1.52 2.97 71.24 0.21 1.73 16 25 O -0.56 9.27 12.85 -148.98 -1.91 7.36 16 26 Si 0.81 -22.15 32.10 68.60 2.20 -19.95 16 27 O -0.16 2.92 8.78 -6.46 -0.06 2.86 16 28 C -0.04 0.93 9.20 22.79 0.21 1.14 16 29 C -0.15 6.57 7.43 31.12 0.23 6.80 16 30 H 0.12 -7.68 8.14 -2.39 -0.02 -7.70 16 31 H 0.13 -7.98 8.14 -2.38 -0.02 -8.00 16 32 H 0.12 -7.74 8.11 -2.39 -0.02 -7.76 16 33 H 0.13 -8.18 6.10 -2.39 -0.01 -8.20 16 34 H 0.13 -8.31 8.14 -2.39 -0.02 -8.33 16 35 H 0.12 -7.99 8.11 -2.39 -0.02 -8.00 16 36 H 0.14 -8.72 7.79 -2.38 -0.02 -8.74 16 37 H 0.14 -9.07 8.09 -2.39 -0.02 -9.09 16 38 H 0.11 -4.98 8.10 -2.39 -0.02 -5.00 16 39 H 0.08 -3.42 8.14 -2.39 -0.02 -3.44 16 40 H 0.41 -14.97 6.73 -92.71 -0.62 -15.60 16 41 H 0.41 -7.16 9.06 -74.06 -0.67 -7.83 16 42 H 0.15 -2.96 8.06 -2.91 -0.02 -2.98 16 43 H 0.16 -3.43 6.96 -2.91 -0.02 -3.45 16 44 H 0.17 -3.08 7.25 -2.91 -0.02 -3.10 16 45 H 0.15 -2.12 8.06 -2.91 -0.02 -2.14 16 46 H 0.12 -2.95 7.96 -2.38 -0.02 -2.96 16 47 H 0.40 -10.24 8.74 -74.06 -0.65 -10.89 16 48 H -0.29 5.92 7.11 99.48 0.71 6.62 16 49 H -0.27 6.56 7.11 99.48 0.71 7.27 16 50 H 0.16 -4.89 6.24 -2.91 -0.02 -4.91 16 51 H 0.08 -3.17 8.14 -2.39 -0.02 -3.19 16 52 H 0.11 -5.00 7.90 -2.39 -0.02 -5.02 16 Total: 1.00 -90.68 423.52 0.66 -90.02 By element: Atomic # 1 Polarization: -160.89 SS G_CDS: -1.67 Total: -162.56 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 5.57 Total: 30.19 kcal Atomic # 7 Polarization: 45.34 SS G_CDS: -2.93 Total: 42.41 kcal Atomic # 8 Polarization: 22.41 SS G_CDS: -2.51 Total: 19.89 kcal Atomic # 14 Polarization: -22.15 SS G_CDS: 2.20 Total: -19.95 kcal Total: -90.68 0.66 -90.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.928 kcal (2) G-P(sol) polarization free energy of solvation -90.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds