Wall clock time and date at job start Sun Mar 7 2021 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00906 * 109.47429 * 2 1 4 4 C 1.46896 * 109.47327 * 119.99849 * 2 1 3 5 5 C 1.46902 * 109.46986 * 240.00258 * 2 1 3 6 6 C 1.53003 * 109.47075 * 175.00054 * 5 2 1 7 7 H 1.09007 * 112.90910 * 316.25064 * 6 5 2 8 8 C 1.53783 * 113.61632 * 87.49923 * 6 5 2 9 9 C 1.53781 * 87.08212 * 139.98320 * 8 6 5 10 10 H 1.08998 * 113.68989 * 220.00899 * 9 8 6 11 11 N 1.46495 * 113.61181 * 89.11657 * 9 8 6 12 12 C 1.34783 * 120.00024 * 107.50753 * 11 9 8 13 13 O 1.21513 * 119.99590 * 359.97438 * 12 11 9 14 14 C 1.48167 * 120.00073 * 179.97438 * 12 11 9 15 15 N 1.32721 * 119.72387 * 359.97438 * 14 12 11 16 16 C 1.31524 * 121.64041 * 179.97438 * 15 14 12 17 17 C 1.38558 * 120.90318 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.32082 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47352 * 245.00106 * 18 17 16 20 20 Si 1.86306 * 109.46914 * 5.00206 * 18 17 16 21 21 C 1.38625 * 119.35395 * 359.97438 * 17 16 15 22 22 C 1.38590 * 118.48819 * 359.97438 * 21 17 16 23 23 C 1.53772 * 113.61600 * 184.99697 * 6 5 2 24 24 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47092 * 299.99942 * 1 2 3 26 26 H 1.09003 * 109.47295 * 59.99997 * 1 2 3 27 27 H 1.09001 * 109.47245 * 60.00034 * 4 2 1 28 28 H 1.08999 * 109.47474 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47205 * 300.00140 * 4 2 1 30 30 H 1.08992 * 109.47319 * 54.99964 * 5 2 1 31 31 H 1.09005 * 109.47126 * 294.99341 * 5 2 1 32 32 H 1.08993 * 113.61256 * 25.43274 * 8 6 5 33 33 H 1.09005 * 113.61259 * 254.53504 * 8 6 5 34 34 H 0.96999 * 120.00660 * 287.49960 * 11 9 8 35 35 H 1.07999 * 119.54329 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.46986 * 124.99984 * 18 17 16 37 37 H 0.96707 * 113.99844 * 60.00060 * 19 18 17 38 38 H 1.48505 * 109.99653 * 179.97438 * 20 18 17 39 39 H 1.48496 * 109.99963 * 301.31554 * 20 18 17 40 40 H 1.07996 * 120.75096 * 180.02562 * 21 17 16 41 41 H 1.07997 * 120.46527 * 179.97438 * 22 21 17 42 42 H 1.09002 * 113.61583 * 105.47214 * 23 6 5 43 43 H 1.09001 * 113.61850 * 334.56917 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6924 1.1994 5 6 1.9586 -0.6925 -1.1995 6 6 3.4835 -0.5845 -1.2639 7 1 3.8484 0.4151 -1.0277 8 6 4.2130 -1.7028 -0.5010 9 6 5.2160 -1.7358 -1.6663 10 1 5.5293 -2.7416 -1.9461 11 7 6.3430 -0.8153 -1.4967 12 6 7.5687 -1.2965 -1.2089 13 8 7.7387 -2.4937 -1.0898 14 6 8.7086 -0.3656 -1.0379 15 7 8.5167 0.9410 -1.1698 16 6 9.5013 1.8010 -1.0255 17 6 10.7845 1.3705 -0.7289 18 6 11.9031 2.3674 -0.5670 19 8 12.8679 2.1732 -1.6030 20 14 11.2152 4.0954 -0.6747 21 6 11.0293 0.0139 -0.5825 22 6 9.9726 -0.8691 -0.7390 23 6 4.0890 -1.1737 -2.5488 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.5954 -1.7201 1.1995 28 1 3.0486 -0.6920 1.1997 29 1 1.5953 -0.1786 2.0894 30 1 1.5240 -0.2330 -2.0871 31 1 1.6703 -1.7428 -1.1558 32 1 3.6283 -2.6173 -0.4023 33 1 4.6500 -1.3747 0.4421 34 1 6.2072 0.1404 -1.5915 35 1 9.3069 2.8572 -1.1399 36 1 12.3785 2.2254 0.4035 37 1 12.5138 2.2843 -2.4961 38 1 12.3084 5.0880 -0.5159 39 1 10.5365 4.2914 -1.9808 40 1 12.0206 -0.3465 -0.3509 41 1 10.1274 -1.9326 -0.6323 42 1 4.4260 -0.4185 -3.2589 43 1 3.4703 -1.9436 -3.0099 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:24 Heat of formation + Delta-G solvation = 105.060298 kcal Electronic energy + Delta-G solvation = -23416.496643 eV Core-core repulsion = 19968.814788 eV Total energy + Delta-G solvation = -3447.681854 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.33516 -41.83401 -40.58626 -39.06742 -38.05115 -34.83442 -33.64529 -33.01312 -30.20684 -29.48690 -27.92711 -26.70221 -25.85628 -25.08877 -24.29098 -23.51520 -22.17184 -20.62580 -19.42036 -19.03942 -18.74678 -17.90539 -17.72534 -17.33802 -16.77509 -16.65892 -16.53656 -16.26538 -16.13840 -15.58355 -15.18994 -14.98812 -14.55029 -14.43626 -14.32560 -14.01760 -13.74322 -13.54531 -13.53320 -13.51108 -13.27178 -13.04635 -12.74679 -12.68514 -12.21536 -12.13234 -11.69239 -11.51436 -11.36873 -11.12296 -10.75652 -10.73569 -10.45276 -10.11816 -4.98216 -0.66275 0.00973 1.05993 1.20278 1.46088 1.54628 1.84943 1.98322 2.59196 2.87194 2.90304 2.98214 3.22094 3.29814 3.35900 3.45262 3.47421 3.61337 3.72238 3.76707 3.78673 3.87200 4.03899 4.07447 4.20506 4.23047 4.36067 4.42032 4.42975 4.52589 4.54938 4.68919 4.72649 4.75892 4.79026 4.84117 4.87918 4.90021 4.93983 4.96568 5.03390 5.12978 5.31557 5.48736 6.18828 6.38164 6.53073 6.99861 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.003341 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.613633 B = 8378.182021 C = 9184.612992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.368 5.368 3 H 0.439 0.561 4 C -0.057 4.057 5 C 0.010 3.990 6 C -0.119 4.119 7 H 0.129 0.871 8 C -0.149 4.149 9 C 0.085 3.915 10 H 0.074 0.926 11 N -0.680 5.680 12 C 0.573 3.427 13 O -0.567 6.567 14 C 0.064 3.936 15 N -0.449 5.449 16 C 0.103 3.897 17 C -0.139 4.139 18 C -0.086 4.086 19 O -0.547 6.547 20 Si 0.777 3.223 21 C -0.057 4.057 22 C -0.120 4.120 23 C -0.127 4.127 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.422 0.578 35 H 0.190 0.810 36 H 0.132 0.868 37 H 0.388 0.612 38 H -0.310 1.310 39 H -0.267 1.267 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.413 2.568 5.014 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.055 4.945 3 H 0.276 0.724 4 C -0.200 4.200 5 C -0.112 4.112 6 C -0.137 4.137 7 H 0.146 0.854 8 C -0.187 4.187 9 C -0.020 4.020 10 H 0.092 0.908 11 N -0.331 5.331 12 C 0.358 3.642 13 O -0.445 6.445 14 C -0.074 4.074 15 N -0.160 5.160 16 C -0.057 4.057 17 C -0.141 4.141 18 C -0.195 4.195 19 O -0.355 6.355 20 Si 0.681 3.319 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.165 4.165 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.261 0.739 35 H 0.206 0.794 36 H 0.150 0.850 37 H 0.238 0.762 38 H -0.239 1.239 39 H -0.193 1.193 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.100 0.900 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -30.909 2.355 4.973 31.395 hybrid contribution 2.193 -0.431 -0.974 2.438 sum -28.716 1.924 4.000 29.057 Atomic orbital electron populations 1.24123 0.75499 1.09440 1.09754 1.44814 1.15937 1.19285 1.14424 0.72392 1.24270 1.05563 1.02693 0.87450 1.23912 0.95011 1.03597 0.88691 1.22989 0.92821 1.00857 0.97037 0.85360 1.23789 0.97090 1.00387 0.97427 1.22160 0.85904 0.94007 0.99892 0.90808 1.45371 1.06523 1.11743 1.69495 1.17974 0.83389 0.86472 0.76376 1.90830 1.84726 1.16668 1.52275 1.21133 0.93730 0.91149 1.01384 1.67517 1.35097 1.01461 1.11943 1.23051 0.87551 1.00301 0.94785 1.21648 0.97014 0.95888 0.99579 1.25316 0.91431 1.07763 0.94964 1.86647 1.37606 1.92586 1.18680 0.94257 0.81502 0.71013 0.85117 1.21731 1.00008 0.92380 0.94161 1.22276 0.92505 1.02375 0.96965 1.23280 0.95276 1.01679 0.96283 0.86404 0.85720 0.85462 0.86130 0.86672 0.85466 0.83279 0.84481 0.86728 0.90181 0.73928 0.79394 0.85039 0.76215 1.23858 1.19334 0.82996 0.83806 0.90030 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.97 9.19 127.69 1.17 4.14 16 2 N -0.37 24.33 0.66 -948.86 -0.62 23.70 16 3 H 0.44 -30.71 8.41 -89.69 -0.75 -31.46 16 4 C -0.06 3.54 8.57 127.69 1.09 4.63 16 5 C 0.01 -0.61 4.57 86.30 0.39 -0.21 16 6 C -0.12 6.25 3.18 -10.27 -0.03 6.22 16 7 H 0.13 -7.11 8.10 -2.38 -0.02 -7.13 16 8 C -0.15 6.56 5.69 31.12 0.18 6.74 16 9 C 0.09 -2.84 4.32 45.52 0.20 -2.64 16 10 H 0.07 -1.83 7.46 -2.39 -0.02 -1.85 16 11 N -0.68 19.07 5.25 -442.60 -2.32 16.74 16 12 C 0.57 -9.99 7.81 86.88 0.68 -9.31 16 13 O -0.57 5.12 15.92 -3.76 -0.06 5.06 16 14 C 0.06 -1.10 6.75 41.91 0.28 -0.81 16 15 N -0.45 9.34 9.54 -184.91 -1.76 7.58 16 16 C 0.10 -2.26 9.84 84.82 0.83 -1.43 16 17 C -0.14 2.76 5.37 -19.69 -0.11 2.65 16 18 C -0.09 1.69 2.82 71.24 0.20 1.89 16 19 O -0.55 8.04 12.84 -148.98 -1.91 6.12 16 20 Si 0.78 -16.52 29.91 68.60 2.05 -14.47 16 21 C -0.06 1.00 9.83 22.45 0.22 1.22 16 22 C -0.12 1.88 9.63 22.61 0.22 2.09 16 23 C -0.13 5.41 7.39 31.12 0.23 5.64 16 24 H 0.12 -7.37 8.14 -2.39 -0.02 -7.39 16 25 H 0.12 -7.90 8.14 -2.39 -0.02 -7.91 16 26 H 0.13 -8.16 8.11 -2.39 -0.02 -8.18 16 27 H 0.12 -7.32 8.11 -2.39 -0.02 -7.34 16 28 H 0.11 -6.77 5.13 -2.39 -0.01 -6.78 16 29 H 0.13 -7.86 8.14 -2.39 -0.02 -7.88 16 30 H 0.15 -9.47 8.09 -2.39 -0.02 -9.49 16 31 H 0.14 -8.45 7.79 -2.38 -0.02 -8.47 16 32 H 0.11 -5.29 7.89 -2.39 -0.02 -5.31 16 33 H 0.08 -3.38 7.18 -2.38 -0.02 -3.40 16 34 H 0.42 -13.75 8.03 -92.71 -0.74 -14.50 16 35 H 0.19 -5.14 4.86 -2.91 -0.01 -5.16 16 36 H 0.13 -2.74 7.96 -2.39 -0.02 -2.76 16 37 H 0.39 -7.94 8.70 -74.05 -0.64 -8.58 16 38 H -0.31 3.33 7.11 99.48 0.71 4.04 16 39 H -0.27 5.14 7.01 99.48 0.70 5.84 16 40 H 0.15 -2.83 8.06 -2.91 -0.02 -2.85 16 41 H 0.14 -2.08 7.64 -2.91 -0.02 -2.10 16 42 H 0.08 -3.26 8.14 -2.39 -0.02 -3.28 16 43 H 0.12 -5.08 8.10 -2.39 -0.02 -5.10 16 Total: 1.00 -81.33 345.40 -0.15 -81.47 By element: Atomic # 1 Polarization: -145.95 SS G_CDS: -1.08 Total: -147.03 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 5.56 Total: 20.82 kcal Atomic # 7 Polarization: 52.74 SS G_CDS: -4.71 Total: 48.03 kcal Atomic # 8 Polarization: 13.16 SS G_CDS: -1.97 Total: 11.19 kcal Atomic # 14 Polarization: -16.52 SS G_CDS: 2.05 Total: -14.47 kcal Total: -81.33 -0.15 -81.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.533 kcal (2) G-P(sol) polarization free energy of solvation -81.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds