Wall clock time and date at job start Sun Mar 7 2021 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38977 * 119.95592 * 2 1 4 4 O 1.35713 * 119.90986 * 359.97438 * 3 2 1 5 5 C 1.39019 * 120.17896 * 179.97438 * 3 2 1 6 6 C 1.50693 * 119.95672 * 179.97438 * 5 3 2 7 7 O 1.42898 * 109.47148 * 285.00079 * 6 5 3 8 8 Si 1.86298 * 109.47107 * 164.99951 * 6 5 3 9 9 C 1.37684 * 120.08644 * 359.67340 * 5 3 2 10 10 C 1.39755 * 119.90917 * 0.59989 * 9 5 3 11 11 C 1.47600 * 120.08668 * 179.69436 * 10 9 5 12 12 O 1.21588 * 120.00067 * 359.72466 * 11 10 9 13 13 N 1.34779 * 119.99816 * 179.73063 * 11 10 9 14 14 C 1.46508 * 119.99727 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.90570 * 336.24921 * 14 13 11 16 16 C 1.53776 * 113.61221 * 107.50020 * 14 13 11 17 17 C 1.53775 * 87.08393 * 89.11491 * 16 14 13 18 18 H 1.08996 * 113.69476 * 270.87629 * 17 16 14 19 19 C 1.53000 * 113.61825 * 139.97637 * 17 16 14 20 20 N 1.46901 * 109.46769 * 87.50327 * 19 17 16 21 21 H 1.00899 * 109.47244 * 305.00155 * 20 19 17 22 22 C 1.46900 * 109.46907 * 65.00587 * 20 19 17 23 23 C 1.46903 * 109.46840 * 185.00197 * 20 19 17 24 24 C 1.53774 * 113.61242 * 204.99487 * 14 13 11 25 25 C 1.37723 * 119.96040 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47560 * 270.02177 * 1 2 3 27 27 H 1.09006 * 109.47212 * 30.02876 * 1 2 3 28 28 H 1.09003 * 109.46461 * 150.02111 * 1 2 3 29 29 H 0.96702 * 114.00372 * 89.99590 * 4 3 2 30 30 H 1.09005 * 109.47197 * 44.99679 * 6 5 3 31 31 H 0.96704 * 114.00316 * 299.99789 * 7 6 5 32 32 H 1.48500 * 109.99750 * 179.97438 * 8 6 5 33 33 H 1.48501 * 110.00115 * 301.31617 * 8 6 5 34 34 H 1.07995 * 120.04313 * 180.31947 * 9 5 3 35 35 H 0.96998 * 119.99958 * 359.97438 * 13 11 10 36 36 H 1.09005 * 113.62055 * 334.56345 * 16 14 13 37 37 H 1.08999 * 113.61331 * 203.66725 * 16 14 13 38 38 H 1.09002 * 109.47398 * 207.50622 * 19 17 16 39 39 H 1.09001 * 109.47194 * 327.50803 * 19 17 16 40 40 H 1.09004 * 109.46770 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47113 * 299.99046 * 22 20 19 42 42 H 1.08993 * 109.47697 * 60.00045 * 22 20 19 43 43 H 1.08993 * 109.47031 * 60.00232 * 23 20 19 44 44 H 1.09000 * 109.47016 * 180.02562 * 23 20 19 45 45 H 1.09003 * 109.47292 * 299.99660 * 23 20 19 46 46 H 1.09006 * 113.61277 * 156.33445 * 24 14 13 47 47 H 1.09001 * 113.69334 * 25.44856 * 24 14 13 48 48 H 1.08001 * 120.03714 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5196 2.3778 -0.0005 5 6 3.5911 1.2095 0.0005 6 6 4.3385 2.5180 0.0000 7 8 4.2725 3.1037 -1.3018 8 14 6.1195 2.2161 0.4555 9 6 4.2860 0.0209 0.0079 10 6 3.5919 -1.1921 0.0021 11 6 4.3329 -2.4686 0.0031 12 8 5.5487 -2.4658 0.0039 13 7 3.6617 -3.6374 0.0030 14 6 4.3972 -4.9044 0.0046 15 1 5.4055 -4.8102 -0.3987 16 6 4.3385 -5.6491 1.3487 17 6 3.0620 -6.3293 0.8266 18 1 2.1490 -5.7774 1.0495 19 6 2.9642 -7.8119 1.1919 20 7 2.3295 -7.9506 2.5094 21 1 2.8375 -7.4020 3.1869 22 6 0.9412 -7.4760 2.4365 23 6 2.3436 -9.3630 2.9133 24 6 3.6027 -6.0786 -0.5910 25 6 2.1948 -1.1932 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5143 28 1 -0.3632 -0.8902 -0.5135 29 1 1.3218 2.7182 0.8827 30 1 3.8874 3.1945 0.7260 31 1 4.6565 2.5555 -1.9998 32 1 6.8676 3.4989 0.4578 33 1 6.2004 1.5781 1.7940 34 1 5.3659 0.0259 0.0135 35 1 2.6917 -3.6396 0.0026 36 1 4.1662 -4.9948 2.2033 37 1 5.1688 -6.3382 1.5027 38 1 2.3658 -8.3318 0.4437 39 1 3.9639 -8.2452 1.2227 40 1 0.4704 -7.5785 3.4143 41 1 0.9308 -6.4280 2.1369 42 1 0.3925 -8.0687 1.7047 43 1 3.3736 -9.7151 2.9674 44 1 1.8722 -9.4660 3.8907 45 1 1.7948 -9.9557 2.1815 46 1 4.2318 -6.8853 -0.9674 47 1 2.8361 -5.7724 -1.3029 48 1 1.6547 -2.1285 0.0005 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:32 Heat of formation + Delta-G solvation = 45.255253 kcal Electronic energy + Delta-G solvation = -27731.577074 eV Core-core repulsion = 23872.507978 eV Total energy + Delta-G solvation = -3859.069096 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25374 -41.67097 -40.64247 -39.11289 -37.90720 -37.51679 -34.73566 -33.98485 -31.86609 -29.98046 -29.36508 -28.01887 -26.99245 -26.82514 -25.99215 -24.95512 -23.56757 -22.12677 -21.70450 -20.46486 -19.59727 -19.33329 -18.79755 -18.14948 -17.68941 -17.34884 -17.16386 -16.87749 -16.52185 -16.16105 -16.12036 -15.68713 -15.55562 -15.12192 -14.92248 -14.75506 -14.38005 -14.24342 -14.00921 -13.91780 -13.74355 -13.53707 -13.45776 -13.31852 -13.22272 -13.11907 -12.96025 -12.87501 -12.76633 -12.39511 -12.26422 -12.01246 -11.68899 -11.64402 -11.32051 -11.16372 -10.51677 -10.22730 -9.99552 -9.67933 -5.11964 -0.43526 0.04306 1.04777 1.15461 1.46863 1.58294 1.81884 1.96131 2.53346 2.93159 2.98303 3.08501 3.19893 3.33399 3.41967 3.46208 3.52551 3.53584 3.70795 3.77928 3.82014 3.91345 3.98322 4.13118 4.20647 4.28128 4.28909 4.38742 4.40099 4.47547 4.53399 4.59243 4.67613 4.68954 4.76552 4.78310 4.78893 4.84512 4.86315 4.89115 4.97961 5.00028 5.03982 5.06683 5.17132 5.19320 5.30513 5.52334 5.58614 6.40023 6.64393 6.67179 7.10641 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.003060 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.649951 B = 9147.741431 C =10161.344230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C 0.148 3.852 4 O -0.501 6.501 5 C -0.161 4.161 6 C -0.056 4.056 7 O -0.551 6.551 8 Si 0.746 3.254 9 C -0.059 4.059 10 C -0.152 4.152 11 C 0.563 3.437 12 O -0.574 6.574 13 N -0.692 5.692 14 C 0.090 3.910 15 H 0.072 0.928 16 C -0.152 4.152 17 C -0.121 4.121 18 H 0.133 0.867 19 C 0.008 3.992 20 N -0.372 5.372 21 H 0.435 0.565 22 C -0.055 4.055 23 C -0.047 4.047 24 C -0.126 4.126 25 C -0.047 4.047 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.409 0.591 30 H 0.109 0.891 31 H 0.392 0.608 32 H -0.297 1.297 33 H -0.284 1.284 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -33.420 9.795 36.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C 0.102 3.898 4 O -0.314 6.314 5 C -0.162 4.162 6 C -0.167 4.167 7 O -0.358 6.358 8 Si 0.652 3.348 9 C -0.077 4.077 10 C -0.155 4.155 11 C 0.351 3.649 12 O -0.454 6.454 13 N -0.345 5.345 14 C -0.015 4.015 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.140 4.140 18 H 0.151 0.849 19 C -0.114 4.114 20 N 0.052 4.948 21 H 0.272 0.728 22 C -0.198 4.198 23 C -0.189 4.189 24 C -0.164 4.164 25 C -0.066 4.066 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.241 0.759 32 H -0.225 1.225 33 H -0.210 1.210 34 H 0.156 0.844 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.130 0.870 47 H 0.105 0.895 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.014 -33.014 9.910 35.895 hybrid contribution -0.258 1.284 0.740 1.505 sum -10.272 -31.730 10.650 35.010 Atomic orbital electron populations 1.20769 0.88302 1.04150 1.03661 1.20476 0.98293 0.91818 1.01644 1.18630 0.88840 0.86159 0.96121 1.84757 1.75553 1.36177 1.34926 1.20615 0.94334 0.95666 1.05571 1.24846 1.09204 0.93394 0.89247 1.86532 1.84800 1.47803 1.16665 0.93893 0.75818 0.81006 0.84077 1.21021 0.99997 0.90918 0.95781 1.19844 0.94421 0.92727 1.08512 1.18233 0.86654 0.84591 0.75398 1.90833 1.15396 1.88016 1.51111 1.45350 1.10682 1.04038 1.74415 1.22052 0.96965 0.82898 0.99602 0.90975 1.23677 0.98797 0.99761 0.96798 1.23095 0.99602 0.94225 0.97040 0.84944 1.23929 1.04487 0.98737 0.84242 1.44810 1.16470 1.16935 1.16620 0.72821 1.24221 0.79720 1.06090 1.09721 1.24122 1.09528 0.78422 1.06790 1.23281 1.00012 0.96764 0.96374 1.21360 0.91387 0.98840 0.94978 0.89535 0.92167 0.88880 0.73100 0.87384 0.75876 1.22519 1.20999 0.84414 0.74424 0.90508 0.87207 0.83781 0.84201 0.85723 0.85764 0.85810 0.85885 0.85794 0.86048 0.86988 0.89485 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 2.82 9.78 71.24 0.70 3.52 16 2 C -0.12 2.63 5.89 -19.81 -0.12 2.52 16 3 C 0.15 -2.33 6.66 22.63 0.15 -2.18 16 4 O -0.50 7.17 11.84 -90.34 -1.07 6.10 16 5 C -0.16 2.32 5.27 -19.81 -0.10 2.22 16 6 C -0.06 0.67 2.37 71.23 0.17 0.84 16 7 O -0.55 5.13 12.88 -148.98 -1.92 3.21 16 8 Si 0.75 -8.66 29.91 68.60 2.05 -6.61 16 9 C -0.06 0.92 8.20 22.51 0.18 1.10 16 10 C -0.15 3.13 5.87 -20.08 -0.12 3.01 16 11 C 0.56 -11.76 7.76 86.71 0.67 -11.09 16 12 O -0.57 6.25 15.94 -3.99 -0.06 6.19 16 13 N -0.69 22.71 5.21 -443.13 -2.31 20.40 16 14 C 0.09 -3.23 4.32 45.51 0.20 -3.04 16 15 H 0.07 -1.92 7.46 -2.39 -0.02 -1.93 16 16 C -0.15 6.94 7.43 31.12 0.23 7.17 16 17 C -0.12 6.70 3.45 -10.27 -0.04 6.67 16 18 H 0.13 -7.84 6.10 -2.39 -0.01 -7.85 16 19 C 0.01 -0.50 4.48 86.30 0.39 -0.11 16 20 N -0.37 25.07 0.66 -948.84 -0.62 24.44 16 21 H 0.44 -30.29 8.44 -89.69 -0.76 -31.04 16 22 C -0.06 3.63 8.98 127.69 1.15 4.77 16 23 C -0.05 3.02 9.19 127.69 1.17 4.20 16 24 C -0.13 5.72 7.39 31.12 0.23 5.95 16 25 C -0.05 1.25 9.18 22.50 0.21 1.46 16 26 H 0.09 -2.38 8.14 -2.39 -0.02 -2.40 16 27 H 0.06 -1.19 7.52 -2.38 -0.02 -1.21 16 28 H 0.09 -2.74 8.08 -2.39 -0.02 -2.76 16 29 H 0.41 -9.17 9.06 -74.06 -0.67 -9.84 16 30 H 0.11 -1.28 7.82 -2.38 -0.02 -1.30 16 31 H 0.39 -6.61 8.70 -74.05 -0.64 -7.25 16 32 H -0.30 1.03 7.11 99.48 0.71 1.73 16 33 H -0.28 2.07 7.11 99.48 0.71 2.78 16 34 H 0.14 -2.06 4.69 -2.91 -0.01 -2.07 16 35 H 0.42 -16.91 6.72 -92.71 -0.62 -17.53 16 36 H 0.08 -3.32 8.14 -2.38 -0.02 -3.34 16 37 H 0.11 -5.13 7.90 -2.39 -0.02 -5.15 16 38 H 0.14 -9.25 8.09 -2.39 -0.02 -9.27 16 39 H 0.14 -8.86 7.79 -2.39 -0.02 -8.88 16 40 H 0.12 -8.04 8.14 -2.39 -0.02 -8.06 16 41 H 0.12 -8.13 6.10 -2.39 -0.01 -8.14 16 42 H 0.12 -8.00 8.11 -2.39 -0.02 -8.02 16 43 H 0.12 -7.87 8.11 -2.39 -0.02 -7.89 16 44 H 0.12 -7.92 8.14 -2.39 -0.02 -7.94 16 45 H 0.12 -7.75 8.14 -2.39 -0.02 -7.77 16 46 H 0.11 -5.12 8.10 -2.38 -0.02 -5.14 16 47 H 0.09 -3.83 8.14 -2.39 -0.02 -3.85 16 48 H 0.18 -6.48 6.39 -2.91 -0.02 -6.50 16 Total: 1.00 -89.40 380.93 -0.51 -89.91 By element: Atomic # 1 Polarization: -169.00 SS G_CDS: -1.65 Total: -170.64 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 5.07 Total: 27.01 kcal Atomic # 7 Polarization: 47.77 SS G_CDS: -2.93 Total: 44.84 kcal Atomic # 8 Polarization: 18.55 SS G_CDS: -3.05 Total: 15.50 kcal Atomic # 14 Polarization: -8.66 SS G_CDS: 2.05 Total: -6.61 kcal Total: -89.40 -0.51 -89.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.163 kcal (2) G-P(sol) polarization free energy of solvation -89.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds