Wall clock time and date at job start Sun Mar 7 2021 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 H 1.00901 * 109.46773 * 2 1 4 4 C 1.46897 * 109.47097 * 120.00234 * 2 1 3 5 5 C 1.46899 * 109.47005 * 240.00277 * 2 1 3 6 6 C 1.52997 * 109.47254 * 64.99998 * 5 2 1 7 7 H 1.09003 * 112.84890 * 316.19489 * 6 5 2 8 8 C 1.53787 * 113.61418 * 87.49921 * 6 5 2 9 9 C 1.53789 * 87.07916 * 139.98375 * 8 6 5 10 10 H 1.08996 * 113.60909 * 220.02162 * 9 8 6 11 11 N 1.46498 * 113.61404 * 89.11935 * 9 8 6 12 12 C 1.34768 * 120.00221 * 107.50091 * 11 9 8 13 13 O 1.21555 * 120.00139 * 359.97438 * 12 11 9 14 14 C 1.47842 * 120.00233 * 179.97438 * 12 11 9 15 15 C 1.39526 * 120.55836 * 359.72486 * 14 12 11 16 16 N 1.31700 * 120.56354 * 179.72733 * 15 14 12 17 17 C 1.31922 * 121.88056 * 0.58224 * 16 15 14 18 18 C 1.38355 * 121.07833 * 359.68176 * 17 16 15 19 19 C 1.50701 * 120.34647 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47415 * 120.01920 * 19 18 17 21 21 Si 1.86302 * 109.47033 * 0.02562 * 19 18 17 22 22 C 1.38347 * 119.30578 * 0.02562 * 18 17 16 23 23 C 1.53780 * 113.61900 * 184.99935 * 6 5 2 24 24 H 1.09001 * 109.46652 * 299.99608 * 1 2 3 25 25 H 1.08998 * 109.46891 * 59.99506 * 1 2 3 26 26 H 1.09000 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46987 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.47221 * 300.00075 * 4 2 1 29 29 H 1.09002 * 109.46916 * 59.99942 * 4 2 1 30 30 H 1.09002 * 109.47043 * 185.00069 * 5 2 1 31 31 H 1.09001 * 109.47354 * 305.00130 * 5 2 1 32 32 H 1.08998 * 113.61477 * 254.53206 * 8 6 5 33 33 H 1.08992 * 113.61461 * 25.43734 * 8 6 5 34 34 H 0.97002 * 119.99723 * 287.50356 * 11 9 8 35 35 H 1.07994 * 119.71138 * 0.02562 * 15 14 12 36 36 H 1.08002 * 119.46064 * 179.69994 * 17 16 15 37 37 H 1.08999 * 109.47073 * 240.01971 * 19 18 17 38 38 H 0.96699 * 113.99956 * 300.00210 * 20 19 18 39 39 H 1.48503 * 109.99850 * 180.02562 * 21 19 18 40 40 H 1.48496 * 110.00059 * 301.32152 * 21 19 18 41 41 H 1.08003 * 120.86115 * 180.02562 * 22 18 17 42 42 H 1.09004 * 113.61169 * 334.56803 * 23 6 5 43 43 H 1.09003 * 113.61760 * 105.46589 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5540 0.0978 -2.4455 7 1 0.5237 0.4517 -2.4061 8 6 2.5664 1.1858 -2.8408 9 6 2.3146 0.7784 -4.3022 10 1 3.2170 0.7648 -4.9133 11 7 1.2100 1.5059 -4.9322 12 6 1.4666 2.4477 -5.8615 13 8 2.6145 2.6938 -6.1765 14 6 0.3519 3.1815 -6.4977 15 6 -0.9704 2.9043 -6.1490 16 7 -1.9632 3.5617 -6.7118 17 6 -1.7547 4.4901 -7.6255 18 6 -0.4732 4.8195 -8.0296 19 6 -0.2541 5.8833 -9.0744 20 8 0.5368 6.9376 -8.5222 21 14 -1.8995 6.5634 -9.6227 22 6 0.6050 4.1622 -7.4645 23 6 1.9136 -0.6056 -3.7649 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0487 -0.6929 1.1991 28 1 1.5954 -0.1787 2.0894 29 1 1.5954 -1.7202 1.1993 30 1 3.0450 -0.7707 -1.1558 31 1 1.5241 -1.6910 -1.2455 32 1 2.2345 2.1971 -2.6060 33 1 3.5814 0.9824 -2.4996 34 1 0.2940 1.3097 -4.6805 35 1 -1.1811 2.1477 -5.4078 36 1 -2.5983 5.0016 -8.0651 37 1 0.2638 5.4506 -9.9303 38 1 0.1365 7.3693 -7.7551 39 1 -1.6972 7.6131 -10.6536 40 1 -2.7438 5.4711 -10.1697 41 1 1.6161 4.3996 -7.7610 42 1 2.7502 -1.2987 -3.6762 43 1 1.0547 -1.0405 -4.2761 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:42 Heat of formation + Delta-G solvation = 104.313921 kcal Electronic energy + Delta-G solvation = -23418.629215 eV Core-core repulsion = 19970.914995 eV Total energy + Delta-G solvation = -3447.714220 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31308 -41.83475 -40.62478 -39.07273 -37.99722 -34.90366 -33.81039 -32.96072 -30.09965 -29.36469 -27.35343 -26.86346 -26.41826 -25.45807 -23.93181 -23.63921 -21.98055 -20.53911 -19.47196 -19.15407 -18.19738 -18.00241 -17.73048 -17.64722 -17.18500 -16.78447 -16.55371 -16.19187 -15.96365 -15.58768 -15.17633 -14.90155 -14.66372 -14.45816 -14.27634 -14.03518 -13.74593 -13.56804 -13.50840 -13.46785 -13.22417 -13.11952 -12.85021 -12.77540 -12.24015 -12.05065 -11.71715 -11.53242 -11.35662 -11.14638 -10.67862 -10.63584 -10.38861 -10.15475 -5.09448 -0.63571 -0.07956 1.04561 1.16687 1.54476 1.58294 1.83580 1.94757 2.57886 2.92429 2.97583 3.06008 3.18282 3.32968 3.37733 3.40308 3.43983 3.59950 3.66784 3.69224 3.77736 3.78335 3.90200 4.05286 4.19829 4.21357 4.28243 4.38800 4.40352 4.46308 4.52270 4.65972 4.72141 4.75375 4.77403 4.81016 4.85415 4.89222 4.91319 4.95250 5.02827 5.13046 5.26779 5.47953 6.28649 6.59515 6.65668 6.99507 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003102 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.908395 B = 9024.341687 C = 9438.022859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.372 5.372 3 H 0.436 0.564 4 C -0.047 4.047 5 C 0.008 3.992 6 C -0.121 4.121 7 H 0.134 0.866 8 C -0.151 4.151 9 C 0.089 3.911 10 H 0.069 0.931 11 N -0.689 5.689 12 C 0.568 3.432 13 O -0.576 6.576 14 C -0.199 4.199 15 C 0.152 3.848 16 N -0.493 5.493 17 C 0.130 3.870 18 C -0.176 4.176 19 C -0.071 4.071 20 O -0.554 6.554 21 Si 0.780 3.220 22 C -0.005 4.005 23 C -0.126 4.126 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.418 0.582 35 H 0.204 0.796 36 H 0.178 0.822 37 H 0.109 0.891 38 H 0.397 0.603 39 H -0.303 1.303 40 H -0.276 1.276 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -15.341 29.737 33.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.052 4.948 3 H 0.272 0.728 4 C -0.189 4.189 5 C -0.114 4.114 6 C -0.139 4.139 7 H 0.152 0.848 8 C -0.189 4.189 9 C -0.016 4.016 10 H 0.088 0.912 11 N -0.341 5.341 12 C 0.355 3.645 13 O -0.455 6.455 14 C -0.204 4.204 15 C -0.007 4.007 16 N -0.201 5.201 17 C -0.026 4.026 18 C -0.179 4.179 19 C -0.182 4.182 20 O -0.362 6.362 21 Si 0.686 3.314 22 C -0.032 4.032 23 C -0.164 4.164 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.257 0.743 35 H 0.220 0.780 36 H 0.195 0.805 37 H 0.127 0.873 38 H 0.247 0.753 39 H -0.231 1.231 40 H -0.203 1.203 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.947 -15.701 28.665 32.697 hybrid contribution 1.432 0.337 -1.093 1.833 sum 0.485 -15.365 27.572 31.567 Atomic orbital electron populations 1.24228 0.76157 1.09778 1.09592 1.44811 1.16012 1.19415 1.14600 0.72792 1.24123 1.05651 1.02427 0.86649 1.23921 1.05815 0.99734 0.81928 1.23100 1.01663 0.96047 0.93103 0.84816 1.23677 1.01217 0.99969 0.94041 1.22079 0.90177 0.94354 0.95026 0.91218 1.45330 1.11076 1.37612 1.40108 1.18131 0.87450 0.79789 0.79177 1.90842 1.23723 1.66969 1.64004 1.21032 0.95698 1.01469 1.02193 1.23546 0.85768 0.95658 0.95740 1.67809 1.35891 1.07312 1.09057 1.23159 0.95561 0.92426 0.91430 1.21382 0.94413 1.00868 1.01218 1.25136 1.08077 0.88309 0.96651 1.86524 1.49035 1.49037 1.51612 0.93892 0.74139 0.78513 0.84882 1.21638 1.00022 0.90463 0.91080 1.23291 1.03840 0.94559 0.94746 0.85666 0.85755 0.85840 0.85893 0.85738 0.86074 0.84201 0.83769 0.90329 0.87166 0.74267 0.77995 0.80504 0.87330 0.75260 1.23072 1.20285 0.85064 0.86954 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.61 8.98 127.69 1.15 4.76 16 2 N -0.37 24.97 0.66 -948.82 -0.62 24.35 16 3 H 0.44 -30.23 8.44 -89.69 -0.76 -30.99 16 4 C -0.05 3.01 9.19 127.69 1.17 4.18 16 5 C 0.01 -0.50 4.48 86.30 0.39 -0.11 16 6 C -0.12 6.64 3.45 -10.27 -0.04 6.60 16 7 H 0.13 -7.88 6.10 -2.39 -0.01 -7.90 16 8 C -0.15 6.84 7.43 31.13 0.23 7.07 16 9 C 0.09 -3.14 4.32 45.52 0.20 -2.94 16 10 H 0.07 -1.79 7.47 -2.39 -0.02 -1.80 16 11 N -0.69 22.32 5.22 -442.92 -2.31 20.01 16 12 C 0.57 -11.39 7.78 86.79 0.68 -10.72 16 13 O -0.58 5.22 16.02 -3.89 -0.06 5.16 16 14 C -0.20 3.97 5.89 -19.99 -0.12 3.85 16 15 C 0.15 -3.76 10.71 85.02 0.91 -2.85 16 16 N -0.49 9.58 10.35 -194.75 -2.01 7.57 16 17 C 0.13 -2.43 9.84 84.71 0.83 -1.60 16 18 C -0.18 2.98 5.39 -19.81 -0.11 2.88 16 19 C -0.07 1.13 2.83 71.24 0.20 1.33 16 20 O -0.55 7.89 12.78 -148.98 -1.90 5.99 16 21 Si 0.78 -13.42 29.82 68.60 2.05 -11.37 16 22 C -0.01 0.08 9.31 22.73 0.21 0.29 16 23 C -0.13 5.67 7.39 31.12 0.23 5.90 16 24 H 0.12 -8.04 8.14 -2.39 -0.02 -8.06 16 25 H 0.12 -8.08 6.10 -2.39 -0.01 -8.10 16 26 H 0.12 -7.93 8.11 -2.39 -0.02 -7.95 16 27 H 0.12 -7.84 8.11 -2.39 -0.02 -7.86 16 28 H 0.12 -7.93 8.14 -2.38 -0.02 -7.95 16 29 H 0.12 -7.71 8.14 -2.39 -0.02 -7.73 16 30 H 0.14 -8.82 7.79 -2.39 -0.02 -8.84 16 31 H 0.14 -9.22 8.09 -2.39 -0.02 -9.24 16 32 H 0.08 -3.39 8.14 -2.39 -0.02 -3.41 16 33 H 0.11 -5.12 7.90 -2.39 -0.02 -5.14 16 34 H 0.42 -16.92 6.77 -92.71 -0.63 -17.55 16 35 H 0.20 -7.25 6.42 -2.91 -0.02 -7.27 16 36 H 0.18 -3.95 4.88 -2.91 -0.01 -3.97 16 37 H 0.11 -1.50 7.96 -2.39 -0.02 -1.51 16 38 H 0.40 -9.15 8.70 -74.06 -0.64 -9.79 16 39 H -0.30 2.33 7.11 99.48 0.71 3.04 16 40 H -0.28 3.66 7.11 99.48 0.71 4.37 16 41 H 0.13 -1.44 7.74 -2.91 -0.02 -1.46 16 42 H 0.11 -5.09 8.10 -2.38 -0.02 -5.11 16 43 H 0.09 -3.82 8.14 -2.39 -0.02 -3.84 16 Total: 1.00 -87.84 345.43 0.12 -87.72 By element: Atomic # 1 Polarization: -157.11 SS G_CDS: -0.95 Total: -158.06 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.94 Total: 18.64 kcal Atomic # 7 Polarization: 56.87 SS G_CDS: -4.95 Total: 51.92 kcal Atomic # 8 Polarization: 13.11 SS G_CDS: -1.97 Total: 11.15 kcal Atomic # 14 Polarization: -13.42 SS G_CDS: 2.05 Total: -11.37 kcal Total: -87.84 0.12 -87.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.030 kcal (2) G-P(sol) polarization free energy of solvation -87.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds